Wall clock time and date at job start Sun Mar 29 2020 22:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47169 * 2 1 4 4 H 1.08997 * 109.47088 * 55.82786 * 3 2 1 5 5 C 1.50703 * 109.47325 * 175.82806 * 3 2 1 6 6 H 1.08007 * 119.99668 * 119.99944 * 5 3 2 7 7 C 1.37874 * 120.00150 * 299.99900 * 5 3 2 8 8 N 1.31509 * 119.99967 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99869 * 179.97438 * 7 5 3 10 10 H 1.48491 * 109.47207 * 90.00207 * 9 7 5 11 11 H 1.48502 * 109.46959 * 210.00291 * 9 7 5 12 12 H 1.48501 * 109.47154 * 330.00150 * 9 7 5 13 13 N 1.46902 * 109.46853 * 295.82858 * 3 2 1 14 14 C 1.46904 * 110.99839 * 154.08336 * 13 3 2 15 15 C 1.53911 * 113.59526 * 254.91299 * 14 13 3 16 16 C 1.53198 * 86.79467 * 220.58303 * 15 14 13 17 17 C 1.53011 * 87.89123 * 24.93593 * 16 15 14 18 18 C 1.53566 * 115.14472 * 141.82309 * 16 15 14 19 19 C 1.55067 * 103.98022 * 106.75556 * 18 16 15 20 20 C 1.54948 * 102.86131 * 37.30194 * 19 18 16 21 21 C 1.53171 * 115.27169 * 267.75036 * 16 15 14 22 22 H 1.08999 * 109.47350 * 305.18502 * 1 2 3 23 23 H 1.09001 * 109.47356 * 65.19124 * 1 2 3 24 24 H 1.09003 * 109.46668 * 185.19069 * 1 2 3 25 25 H 1.09002 * 109.47424 * 240.00081 * 2 1 3 26 26 H 1.08998 * 109.47362 * 119.99798 * 2 1 3 27 27 H 0.97000 * 119.99821 * 179.97438 * 8 7 5 28 28 H 1.00898 * 111.00171 * 278.03239 * 13 3 2 29 29 H 1.09006 * 112.83270 * 26.03677 * 14 13 3 30 30 H 1.09004 * 113.64862 * 335.04672 * 15 14 13 31 31 H 1.09000 * 113.65472 * 106.06530 * 15 14 13 32 32 H 1.09004 * 113.65221 * 220.57440 * 17 16 15 33 33 H 1.09004 * 113.65208 * 89.55641 * 17 16 15 34 34 H 1.09005 * 110.52316 * 225.37411 * 18 16 15 35 35 H 1.08997 * 110.53022 * 348.12357 * 18 16 15 36 36 H 1.09006 * 110.73010 * 278.95508 * 19 18 16 37 37 H 1.09006 * 110.88932 * 155.72249 * 19 18 16 38 38 H 1.08996 * 110.47778 * 203.76545 * 20 19 18 39 39 H 1.09001 * 110.58835 * 81.19381 * 20 19 18 40 40 H 1.09002 * 110.08973 * 349.18728 * 21 16 15 41 41 H 1.09000 * 110.09092 * 110.77162 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6169 1.9774 0.8502 5 6 3.5434 1.4438 0.1034 6 1 4.1381 1.8922 -0.6789 7 6 4.1598 0.8727 1.1964 8 7 3.4358 0.3263 2.1486 9 14 6.0235 0.8737 1.3241 10 1 6.4708 2.1031 2.0265 11 1 6.4681 -0.3211 2.0858 12 1 6.6130 0.8397 -0.0384 13 7 1.6343 2.1052 -1.2467 14 6 1.5368 3.5594 -1.0622 15 6 0.0886 4.0744 -0.9811 16 6 0.5515 5.2552 -1.8404 17 6 1.6703 4.3569 -2.3719 18 6 -0.4591 5.7311 -2.8942 19 6 -0.9921 7.0710 -2.3238 20 6 0.2684 7.6946 -1.6732 21 6 1.0152 6.4893 -1.0605 22 1 -0.3634 0.5921 0.8399 23 1 -0.3634 0.4312 -0.9328 24 1 -0.3633 -1.0235 0.0930 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.8694 -0.0759 2.9175 28 1 2.2665 1.8779 -1.9994 29 1 2.1763 3.9278 -0.2600 30 1 -0.6339 3.4278 -1.4793 31 1 -0.2187 4.3587 0.0252 32 1 2.6278 4.8670 -2.4776 33 1 1.3909 3.7895 -3.2597 34 1 0.0353 5.8932 -3.8520 35 1 -1.2702 5.0106 -2.9988 36 1 -1.7643 6.8919 -1.5756 37 1 -1.3708 7.7098 -3.1218 38 1 -0.0151 8.4032 -0.8951 39 1 0.8864 8.1835 -2.4263 40 1 0.7569 6.3850 -0.0066 41 1 2.0916 6.6198 -1.1716 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893606496.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:48 Heat of formation + Delta-G solvation = -23.158643 kcal Electronic energy + Delta-G solvation = -17552.538624 eV Core-core repulsion = 15044.883616 eV Total energy + Delta-G solvation = -2507.655008 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.07942 -37.76344 -35.70772 -33.74929 -31.86928 -29.60477 -28.37363 -26.69877 -26.42422 -24.53526 -21.89554 -21.40906 -21.14389 -18.98980 -18.63479 -16.93127 -16.43462 -16.29412 -16.03193 -15.35131 -14.95550 -14.72316 -14.34442 -13.72438 -13.64084 -13.37367 -13.20897 -13.09307 -13.00847 -12.71683 -12.59944 -12.17237 -11.90800 -11.86121 -11.72518 -11.62950 -11.44992 -11.33334 -11.28669 -11.11630 -10.90954 -10.62584 -10.46206 -9.02648 -8.05853 -6.28828 1.36099 1.37696 1.47134 2.38720 3.13184 3.54603 3.59286 3.74068 3.92607 4.06768 4.20275 4.37558 4.41747 4.61118 4.62001 4.72727 4.75543 4.84198 4.87626 4.94159 4.96293 4.99761 5.04211 5.10072 5.15076 5.17854 5.26224 5.29008 5.41476 5.42506 5.50594 5.53265 5.59016 5.63188 5.70396 5.80057 6.11960 6.21675 6.44379 6.86696 7.04222 7.43138 8.90387 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.028168 B = 0.006266 C = 0.005503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.802467 B = 4467.238260 C = 5086.812607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.103 4.103 3 C 0.223 3.777 4 H -0.007 1.007 5 C -0.559 4.559 6 H 0.048 0.952 7 C 0.019 3.981 8 N -0.912 5.912 9 Si 0.950 3.050 10 H -0.279 1.279 11 H -0.281 1.281 12 H -0.269 1.269 13 N -0.668 5.668 14 C 0.061 3.939 15 C -0.109 4.109 16 C -0.074 4.074 17 C -0.120 4.120 18 C -0.105 4.105 19 C -0.121 4.121 20 C -0.118 4.118 21 C -0.108 4.108 22 H 0.027 0.973 23 H 0.058 0.942 24 H 0.044 0.956 25 H 0.028 0.972 26 H 0.059 0.941 27 H 0.262 0.738 28 H 0.328 0.672 29 H 0.034 0.966 30 H 0.083 0.917 31 H 0.045 0.955 32 H 0.061 0.939 33 H 0.091 0.909 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.054 0.946 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.860 11.253 -8.860 15.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.142 4.142 3 C 0.114 3.886 4 H 0.011 0.989 5 C -0.598 4.598 6 H 0.067 0.933 7 C -0.181 4.181 8 N -0.551 5.551 9 Si 0.776 3.224 10 H -0.205 1.205 11 H -0.207 1.207 12 H -0.194 1.194 13 N -0.296 5.296 14 C -0.050 4.050 15 C -0.147 4.147 16 C -0.075 4.075 17 C -0.158 4.158 18 C -0.142 4.142 19 C -0.158 4.158 20 C -0.156 4.156 21 C -0.145 4.145 22 H 0.047 0.953 23 H 0.077 0.923 24 H 0.063 0.937 25 H 0.047 0.953 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.145 0.855 29 H 0.052 0.948 30 H 0.102 0.898 31 H 0.064 0.936 32 H 0.079 0.921 33 H 0.109 0.891 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.098 0.902 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.072 0.928 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.519 11.041 -8.575 15.874 hybrid contribution 2.217 -0.159 0.804 2.364 sum -5.302 10.882 -7.771 14.385 Atomic orbital electron populations 1.21529 0.96387 0.99428 1.00566 1.21358 0.94415 0.98441 0.99938 1.18922 0.91327 0.91400 0.86918 0.98907 1.22196 0.94086 1.37693 1.05818 0.93335 1.25683 1.02215 0.94772 0.95434 1.70013 1.36484 1.38629 1.09972 0.85683 0.81007 0.77523 0.78177 1.20499 1.20682 1.19404 1.60986 1.53982 1.06896 1.07762 1.22878 0.96904 0.88109 0.97112 1.23065 0.96401 0.96495 0.98731 1.21750 0.96061 0.93281 0.96377 1.23142 0.98339 0.97420 0.96915 1.22235 0.97393 0.97167 0.97436 1.22507 0.97105 0.96089 1.00109 1.22376 0.96701 0.96479 1.00006 1.21961 0.99887 0.93927 0.98762 0.95334 0.92342 0.93731 0.95293 0.92273 0.92906 0.85542 0.94836 0.89843 0.93581 0.92076 0.89098 0.90804 0.91542 0.91845 0.90205 0.91166 0.90963 0.92767 0.92268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.05 9.73 71.98 0.70 -4.35 16 2 C -0.10 -5.07 5.45 30.59 0.17 -4.91 16 3 C 0.22 11.45 1.85 44.17 0.08 11.53 16 4 H -0.01 -0.41 7.83 -2.39 -0.02 -0.43 16 5 C -0.56 -30.94 8.46 25.60 0.22 -30.73 16 6 H 0.05 2.66 7.73 -2.91 -0.02 2.64 16 7 C 0.02 1.05 5.29 84.65 0.45 1.50 16 8 N -0.91 -53.15 11.29 21.45 0.24 -52.90 16 9 Si 0.95 44.02 29.54 68.60 2.03 46.05 16 10 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 11 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 12 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 13 N -0.67 -28.38 5.81 -470.14 -2.73 -31.11 16 14 C 0.06 2.31 3.68 45.53 0.17 2.48 16 15 C -0.11 -3.54 7.09 30.97 0.22 -3.32 16 16 C -0.07 -1.97 1.13 -51.87 -0.06 -2.03 16 17 C -0.12 -3.59 6.90 30.91 0.21 -3.38 16 18 C -0.10 -2.22 6.20 31.49 0.20 -2.03 16 19 C -0.12 -2.19 6.91 31.97 0.22 -1.97 16 20 C -0.12 -2.26 6.84 31.76 0.22 -2.05 16 21 C -0.11 -2.70 6.15 31.15 0.19 -2.51 16 22 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 23 H 0.06 2.27 7.88 -2.39 -0.02 2.25 16 24 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 25 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.06 3.28 5.97 -2.39 -0.01 3.27 16 27 H 0.26 14.51 8.31 -92.71 -0.77 13.73 16 28 H 0.33 13.73 8.24 -89.70 -0.74 12.99 16 29 H 0.03 1.51 7.85 -2.38 -0.02 1.49 16 30 H 0.08 2.70 7.95 -2.38 -0.02 2.68 16 31 H 0.05 1.56 7.86 -2.39 -0.02 1.54 16 32 H 0.06 1.79 7.86 -2.38 -0.02 1.77 16 33 H 0.09 2.55 8.13 -2.38 -0.02 2.53 16 34 H 0.07 1.43 8.11 -2.38 -0.02 1.41 16 35 H 0.07 1.41 7.81 -2.39 -0.02 1.39 16 36 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 37 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 38 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.05 1.47 7.73 -2.39 -0.02 1.45 16 41 H 0.06 1.52 7.73 -2.39 -0.02 1.51 16 Total: -1.00 -58.85 317.63 2.75 -56.10 By element: Atomic # 1 Polarization: 23.40 SS G_CDS: 0.23 Total: 23.63 kcal Atomic # 6 Polarization: -44.74 SS G_CDS: 2.98 Total: -41.76 kcal Atomic # 7 Polarization: -81.53 SS G_CDS: -2.49 Total: -84.02 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -58.85 2.75 -56.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893606496.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.942 kcal (2) G-P(sol) polarization free energy of solvation -58.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds