Wall clock time and date at job start Sun Mar 29 2020 21:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46902 * 109.46971 * 2 1 4 4 C 1.46893 * 111.00206 * 164.86846 * 3 2 1 5 5 C 1.50701 * 109.47084 * 293.95526 * 4 3 2 6 6 H 1.08005 * 119.99851 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00558 * 179.97438 * 5 4 3 8 8 N 1.31511 * 120.00830 * 179.97438 * 7 5 4 9 9 Si 1.86808 * 119.99572 * 0.02562 * 7 5 4 10 10 H 1.48496 * 109.47044 * 89.99778 * 9 7 5 11 11 H 1.48499 * 109.47035 * 209.99948 * 9 7 5 12 12 H 1.48499 * 109.46836 * 329.99716 * 9 7 5 13 13 C 1.46901 * 111.00206 * 288.82426 * 3 2 1 14 14 C 1.50698 * 109.47562 * 165.30820 * 13 3 2 15 15 N 1.30838 * 125.89861 * 95.22063 * 14 13 3 16 16 N 1.40080 * 108.20645 * 179.97438 * 15 14 13 17 17 H 0.96999 * 126.03734 * 179.97438 * 16 15 14 18 18 C 1.34950 * 107.92586 * 0.02562 * 16 15 14 19 19 C 1.50700 * 126.12877 * 180.02562 * 18 16 15 20 20 C 1.35317 * 107.74404 * 359.74534 * 18 16 15 21 21 C 1.50706 * 126.04184 * 180.27608 * 20 18 16 22 22 H 1.08997 * 109.47310 * 303.72153 * 1 2 3 23 23 H 1.09007 * 109.47057 * 63.73041 * 1 2 3 24 24 H 1.09003 * 109.47123 * 183.72408 * 1 2 3 25 25 H 1.08993 * 109.47162 * 120.00013 * 2 1 3 26 26 H 1.09002 * 109.47338 * 240.00308 * 2 1 3 27 27 H 1.09002 * 109.46996 * 53.95082 * 4 3 2 28 28 H 1.08997 * 109.47240 * 173.95985 * 4 3 2 29 29 H 0.96998 * 120.00717 * 179.97438 * 8 7 5 30 30 H 1.09002 * 109.46669 * 285.31150 * 13 3 2 31 31 H 1.09004 * 109.47218 * 45.30559 * 13 3 2 32 32 H 1.08993 * 109.47365 * 90.01566 * 19 18 16 33 33 H 1.08996 * 109.46623 * 210.02364 * 19 18 16 34 34 H 1.09004 * 109.46454 * 330.01472 * 19 18 16 35 35 H 1.08995 * 109.47058 * 274.42503 * 21 20 18 36 36 H 1.08999 * 109.46784 * 34.42293 * 21 20 18 37 37 H 1.08994 * 109.46782 * 154.42065 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4432 1.4401 0.3580 5 6 3.6191 0.9977 1.7878 6 1 2.7593 0.7052 2.3722 7 6 4.8777 0.9662 2.3499 8 7 5.0312 0.5806 3.5978 9 14 6.3648 1.4728 1.3392 10 1 6.6001 2.9300 1.5009 11 1 7.5590 0.7237 1.8061 12 1 6.1175 1.1671 -0.0927 13 6 1.7779 2.0289 -1.2981 14 6 1.9511 3.5195 -1.1596 15 7 3.0422 4.1926 -1.4212 16 7 2.7926 5.5471 -1.1657 17 1 3.4255 6.2742 -1.2734 18 6 1.5164 5.6616 -0.7421 19 6 0.8205 6.9407 -0.3539 20 6 0.9718 4.4229 -0.7342 21 6 -0.4399 4.0775 -0.3353 22 1 -0.3634 0.5705 0.8547 23 1 -0.3633 0.4549 -0.9216 24 1 -0.3633 -1.0255 0.0668 25 1 1.8933 -0.5138 0.8899 26 1 1.8934 -0.5138 -0.8900 27 1 4.0089 0.7794 -0.2990 28 1 3.8066 2.4617 0.2465 29 1 5.9167 0.5581 3.9931 30 1 2.4887 1.6470 -2.0310 31 1 0.7624 1.8103 -1.6286 32 1 0.3413 7.3744 -1.2316 33 1 0.0667 6.7284 0.4042 34 1 1.5504 7.6443 0.0465 35 1 -0.4894 3.9426 0.7452 36 1 -1.1091 4.8852 -0.6316 37 1 -0.7420 3.1550 -0.8309 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893922487.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:33 Heat of formation + Delta-G solvation = 67.927610 kcal Electronic energy + Delta-G solvation = -17308.051997 eV Core-core repulsion = 14700.806441 eV Total energy + Delta-G solvation = -2607.245555 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.98955 -36.99975 -32.72718 -32.63828 -32.24871 -30.13530 -28.41141 -27.56900 -25.27257 -24.96461 -22.01472 -20.43800 -19.48831 -18.75682 -16.98159 -16.73624 -15.13958 -14.83078 -14.38352 -14.07402 -13.81992 -13.44796 -13.05977 -12.73022 -12.50177 -12.41587 -12.31465 -12.21165 -12.05379 -11.74014 -11.41580 -11.11170 -11.02374 -10.51563 -10.36486 -10.17171 -10.01146 -9.77913 -9.15747 -8.91553 -8.48339 -7.95420 -7.29741 -5.97922 -3.93599 2.17691 3.07977 3.17914 3.35847 3.41824 3.48824 4.50585 4.82976 4.90610 5.13032 5.17822 5.35827 5.43890 5.51633 5.59823 5.74107 5.79467 5.88998 5.96652 6.00364 6.08011 6.14269 6.32706 6.38235 6.39023 6.53761 6.73739 6.80333 7.03992 7.06258 7.12549 7.60759 7.73555 7.96624 8.10440 8.16262 8.74062 9.10726 9.65324 11.15136 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.019735 B = 0.008921 C = 0.007084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.482866 B = 3137.835939 C = 3951.758557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.056 3.944 3 N -0.518 5.518 4 C 0.160 3.840 5 C -0.504 4.504 6 H 0.081 0.919 7 C 0.068 3.932 8 N -0.903 5.903 9 Si 0.872 3.128 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.266 1.266 13 C 0.127 3.873 14 C 0.107 3.893 15 N -0.290 5.290 16 N -0.481 5.481 17 H 0.433 0.567 18 C 0.069 3.931 19 C -0.087 4.087 20 C -0.216 4.216 21 C -0.066 4.066 22 H 0.062 0.938 23 H 0.043 0.957 24 H 0.049 0.951 25 H 0.092 0.908 26 H 0.019 0.981 27 H -0.014 1.014 28 H 0.032 0.968 29 H 0.262 0.738 30 H 0.037 0.963 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.051 0.949 37 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.143 9.048 -10.220 17.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.072 4.072 3 N -0.243 5.243 4 C 0.034 3.966 5 C -0.542 4.542 6 H 0.099 0.901 7 C -0.133 4.133 8 N -0.543 5.543 9 Si 0.700 3.300 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.191 1.191 13 C -0.003 4.003 14 C -0.061 4.061 15 N -0.113 5.113 16 N -0.189 5.189 17 H 0.276 0.724 18 C -0.059 4.059 19 C -0.145 4.145 20 C -0.228 4.228 21 C -0.124 4.124 22 H 0.081 0.919 23 H 0.062 0.938 24 H 0.068 0.932 25 H 0.111 0.889 26 H 0.037 0.963 27 H 0.004 0.996 28 H 0.050 0.950 29 H 0.072 0.928 30 H 0.055 0.945 31 H 0.103 0.897 32 H 0.093 0.907 33 H 0.103 0.897 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.069 0.931 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.069 9.187 -10.122 16.405 hybrid contribution 1.115 0.385 -0.754 1.400 sum -7.954 9.572 -10.876 16.528 Atomic orbital electron populations 1.21814 0.96338 1.00548 1.01503 1.22008 0.94359 0.89440 1.01388 1.61908 1.21150 1.16105 1.25159 1.20220 0.83061 0.96598 0.96747 1.21056 0.94520 1.43512 0.95115 0.90103 1.24859 0.98589 0.95070 0.94745 1.69893 1.22987 1.48631 1.12750 0.86892 0.82879 0.78899 0.81326 1.20416 1.21358 1.19113 1.20410 1.00840 0.86475 0.92592 1.22064 0.90389 0.96358 0.97271 1.77329 1.22304 0.86606 1.25040 1.46091 1.10324 1.07721 1.54804 0.72444 1.20774 0.86427 0.97121 1.01530 1.20376 1.00089 0.92016 1.02046 1.19671 0.98836 0.90989 1.13286 1.19996 0.90413 1.00597 1.01345 0.91898 0.93775 0.93190 0.88928 0.96295 0.99618 0.94977 0.92825 0.94495 0.89699 0.90718 0.89714 0.91451 0.91728 0.93052 0.92004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 9.89 37.16 0.37 -1.83 16 2 C 0.06 1.08 5.53 -3.82 -0.02 1.06 16 3 N -0.52 -11.23 4.41 -237.52 -1.05 -12.27 16 4 C 0.16 4.14 3.64 -4.98 -0.02 4.13 16 5 C -0.50 -14.85 8.85 -34.44 -0.30 -15.15 16 6 H 0.08 2.55 7.49 -52.48 -0.39 2.16 16 7 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 8 N -0.90 -28.45 13.96 55.43 0.77 -27.67 16 9 Si 0.87 22.93 27.47 -169.99 -4.67 18.26 16 10 H -0.28 -7.29 7.11 56.52 0.40 -6.89 16 11 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 12 H -0.27 -6.88 6.54 56.52 0.37 -6.51 16 13 C 0.13 2.37 5.14 -4.98 -0.03 2.34 16 14 C 0.11 2.03 5.92 -82.41 -0.49 1.55 16 15 N -0.29 -5.73 12.09 33.67 0.41 -5.32 16 16 N -0.48 -7.50 7.36 33.48 0.25 -7.26 16 17 H 0.43 5.20 8.96 -182.61 -1.64 3.57 16 18 C 0.07 1.00 7.21 -82.26 -0.59 0.41 16 19 C -0.09 -0.82 10.10 36.01 0.36 -0.46 16 20 C -0.22 -3.55 6.10 -105.05 -0.64 -4.19 16 21 C -0.07 -0.87 9.77 36.01 0.35 -0.52 16 22 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 23 H 0.04 0.59 6.65 -51.93 -0.35 0.25 16 24 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.09 2.03 6.59 -51.93 -0.34 1.68 16 26 H 0.02 0.35 8.06 -51.93 -0.42 -0.07 16 27 H -0.01 -0.37 7.18 -51.93 -0.37 -0.74 16 28 H 0.03 0.88 6.17 -51.93 -0.32 0.56 16 29 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 30 H 0.04 0.70 8.07 -51.93 -0.42 0.28 16 31 H 0.08 1.34 5.53 -51.93 -0.29 1.05 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.08 0.76 7.89 -51.93 -0.41 0.35 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.05 0.54 8.00 -51.93 -0.42 0.13 16 37 H 0.06 0.79 7.25 -51.93 -0.38 0.42 16 LS Contribution 300.53 15.07 4.53 4.53 Total: -1.00 -34.34 300.53 -7.88 -42.22 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -7.02 Total: -1.77 kcal Atomic # 6 Polarization: -9.61 SS G_CDS: -1.11 Total: -10.71 kcal Atomic # 7 Polarization: -52.91 SS G_CDS: 0.38 Total: -52.53 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -4.67 Total: 18.26 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -34.34 -7.88 -42.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893922487.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.148 kcal (2) G-P(sol) polarization free energy of solvation -34.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds