Wall clock time and date at job start Sun Mar 29 2020 21:47:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46902 * 109.46971 * 2 1 4 4 C 1.46893 * 111.00206 * 164.86846 * 3 2 1 5 5 C 1.50701 * 109.47084 * 293.95526 * 4 3 2 6 6 H 1.08005 * 119.99851 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00558 * 179.97438 * 5 4 3 8 8 N 1.31511 * 120.00830 * 179.97438 * 7 5 4 9 9 Si 1.86808 * 119.99572 * 0.02562 * 7 5 4 10 10 H 1.48496 * 109.47044 * 89.99778 * 9 7 5 11 11 H 1.48499 * 109.47035 * 209.99948 * 9 7 5 12 12 H 1.48499 * 109.46836 * 329.99716 * 9 7 5 13 13 C 1.46901 * 111.00206 * 288.82426 * 3 2 1 14 14 C 1.50698 * 109.47562 * 165.30820 * 13 3 2 15 15 N 1.30838 * 125.89861 * 95.22063 * 14 13 3 16 16 N 1.40080 * 108.20645 * 179.97438 * 15 14 13 17 17 H 0.96999 * 126.03734 * 179.97438 * 16 15 14 18 18 C 1.34950 * 107.92586 * 0.02562 * 16 15 14 19 19 C 1.50700 * 126.12877 * 180.02562 * 18 16 15 20 20 C 1.35317 * 107.74404 * 359.74534 * 18 16 15 21 21 C 1.50706 * 126.04184 * 180.27608 * 20 18 16 22 22 H 1.08997 * 109.47310 * 303.72153 * 1 2 3 23 23 H 1.09007 * 109.47057 * 63.73041 * 1 2 3 24 24 H 1.09003 * 109.47123 * 183.72408 * 1 2 3 25 25 H 1.08993 * 109.47162 * 120.00013 * 2 1 3 26 26 H 1.09002 * 109.47338 * 240.00308 * 2 1 3 27 27 H 1.09002 * 109.46996 * 53.95082 * 4 3 2 28 28 H 1.08997 * 109.47240 * 173.95985 * 4 3 2 29 29 H 0.96998 * 120.00717 * 179.97438 * 8 7 5 30 30 H 1.09002 * 109.46669 * 285.31150 * 13 3 2 31 31 H 1.09004 * 109.47218 * 45.30559 * 13 3 2 32 32 H 1.08993 * 109.47365 * 90.01566 * 19 18 16 33 33 H 1.08996 * 109.46623 * 210.02364 * 19 18 16 34 34 H 1.09004 * 109.46454 * 330.01472 * 19 18 16 35 35 H 1.08995 * 109.47058 * 274.42503 * 21 20 18 36 36 H 1.08999 * 109.46784 * 34.42293 * 21 20 18 37 37 H 1.08994 * 109.46782 * 154.42065 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4432 1.4401 0.3580 5 6 3.6191 0.9977 1.7878 6 1 2.7593 0.7052 2.3722 7 6 4.8777 0.9662 2.3499 8 7 5.0312 0.5806 3.5978 9 14 6.3648 1.4728 1.3392 10 1 6.6001 2.9300 1.5009 11 1 7.5590 0.7237 1.8061 12 1 6.1175 1.1671 -0.0927 13 6 1.7779 2.0289 -1.2981 14 6 1.9511 3.5195 -1.1596 15 7 3.0422 4.1926 -1.4212 16 7 2.7926 5.5471 -1.1657 17 1 3.4255 6.2742 -1.2734 18 6 1.5164 5.6616 -0.7421 19 6 0.8205 6.9407 -0.3539 20 6 0.9718 4.4229 -0.7342 21 6 -0.4399 4.0775 -0.3353 22 1 -0.3634 0.5705 0.8547 23 1 -0.3633 0.4549 -0.9216 24 1 -0.3633 -1.0255 0.0668 25 1 1.8933 -0.5138 0.8899 26 1 1.8934 -0.5138 -0.8900 27 1 4.0089 0.7794 -0.2990 28 1 3.8066 2.4617 0.2465 29 1 5.9167 0.5581 3.9931 30 1 2.4887 1.6470 -2.0310 31 1 0.7624 1.8103 -1.6286 32 1 0.3413 7.3744 -1.2316 33 1 0.0667 6.7284 0.4042 34 1 1.5504 7.6443 0.0465 35 1 -0.4894 3.9426 0.7452 36 1 -1.1091 4.8852 -0.6316 37 1 -0.7420 3.1550 -0.8309 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893922487.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:32 Heat of formation + Delta-G solvation = 42.848498 kcal Electronic energy + Delta-G solvation = -17309.139509 eV Core-core repulsion = 14700.806441 eV Total energy + Delta-G solvation = -2608.333067 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.21862 -38.66731 -34.81673 -33.78049 -33.62691 -31.74690 -29.93944 -28.86759 -26.65729 -26.33185 -23.89604 -22.03966 -20.79335 -20.10717 -19.00085 -18.14300 -16.79407 -16.40261 -16.08980 -15.48295 -15.41765 -14.78215 -14.49725 -14.27139 -14.09498 -13.58274 -13.53166 -13.42678 -13.24009 -12.95769 -12.87194 -12.61939 -12.59925 -12.35174 -12.09151 -11.90261 -11.65506 -11.49477 -11.23970 -10.81523 -10.22470 -9.13496 -9.02618 -8.32319 -6.32815 0.97478 1.26030 1.26484 1.39345 1.78795 2.05735 2.28654 3.00994 3.35832 3.79319 3.87353 4.17567 4.30505 4.37992 4.45771 4.54302 4.62953 4.72408 4.76843 4.79910 4.91964 5.00779 5.08473 5.11849 5.13686 5.22503 5.24989 5.33835 5.43923 5.48895 5.55887 5.83773 5.98041 6.40367 6.54997 6.62423 6.72626 6.83370 7.30039 8.84051 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.019735 B = 0.008921 C = 0.007084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.482866 B = 3137.835939 C = 3951.758557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.053 3.947 3 N -0.527 5.527 4 C 0.177 3.823 5 C -0.508 4.508 6 H 0.045 0.955 7 C 0.014 3.986 8 N -0.943 5.943 9 Si 0.937 3.063 10 H -0.275 1.275 11 H -0.274 1.274 12 H -0.261 1.261 13 C 0.131 3.869 14 C 0.082 3.918 15 N -0.339 5.339 16 N -0.476 5.476 17 H 0.445 0.555 18 C 0.081 3.919 19 C -0.084 4.084 20 C -0.244 4.244 21 C -0.061 4.061 22 H 0.052 0.948 23 H 0.068 0.932 24 H 0.072 0.928 25 H 0.056 0.944 26 H 0.029 0.971 27 H -0.024 1.024 28 H 0.020 0.980 29 H 0.267 0.733 30 H 0.029 0.971 31 H 0.116 0.884 32 H 0.101 0.899 33 H 0.094 0.906 34 H 0.083 0.917 35 H 0.051 0.949 36 H 0.081 0.919 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.251 10.621 -11.690 19.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.074 4.074 3 N -0.252 5.252 4 C 0.049 3.951 5 C -0.546 4.546 6 H 0.064 0.936 7 C -0.183 4.183 8 N -0.584 5.584 9 Si 0.762 3.238 10 H -0.200 1.200 11 H -0.199 1.199 12 H -0.186 1.186 13 C 0.001 3.999 14 C -0.085 4.085 15 N -0.164 5.164 16 N -0.186 5.186 17 H 0.291 0.709 18 C -0.048 4.048 19 C -0.142 4.142 20 C -0.255 4.255 21 C -0.118 4.118 22 H 0.071 0.929 23 H 0.087 0.913 24 H 0.091 0.909 25 H 0.074 0.926 26 H 0.048 0.952 27 H -0.006 1.006 28 H 0.038 0.962 29 H 0.076 0.924 30 H 0.047 0.953 31 H 0.134 0.866 32 H 0.119 0.881 33 H 0.112 0.888 34 H 0.101 0.899 35 H 0.070 0.930 36 H 0.100 0.900 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.189 10.757 -11.603 18.819 hybrid contribution 1.386 -0.061 -0.273 1.414 sum -8.802 10.696 -11.876 18.246 Atomic orbital electron populations 1.21716 0.92734 1.02178 1.02314 1.22050 0.97273 0.88031 1.00065 1.61827 1.18172 1.17681 1.27566 1.19852 0.85904 0.95098 0.94200 1.21253 0.93557 1.43090 0.96695 0.93633 1.25667 1.01674 0.95152 0.95821 1.70017 1.24031 1.49948 1.14433 0.85860 0.79430 0.78637 0.79855 1.20025 1.19926 1.18565 1.20471 1.02301 0.86550 0.90537 1.22253 0.91306 0.96632 0.98263 1.77205 1.23485 0.88623 1.27066 1.46147 1.11308 1.06929 1.54246 0.70921 1.21548 0.85663 0.98561 0.98996 1.20566 1.00374 0.89836 1.03461 1.20107 0.99942 0.91267 1.14160 1.20012 0.89382 1.01986 1.00452 0.92857 0.91327 0.90948 0.92590 0.95234 1.00606 0.96230 0.92423 0.95310 0.86573 0.88077 0.88778 0.89861 0.92999 0.90001 0.91697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.78 9.89 71.98 0.71 -3.07 16 2 C 0.05 2.06 5.53 86.30 0.48 2.54 16 3 N -0.53 -23.00 4.41 -905.38 -4.00 -26.99 16 4 C 0.18 9.33 3.64 85.56 0.31 9.64 16 5 C -0.51 -30.94 8.85 25.60 0.23 -30.71 16 6 H 0.05 3.03 7.49 -2.91 -0.02 3.01 16 7 C 0.01 0.88 5.47 84.65 0.46 1.34 16 8 N -0.94 -60.79 13.96 21.45 0.30 -60.49 16 9 Si 0.94 47.98 27.47 68.60 1.88 49.87 16 10 H -0.27 -13.83 7.11 99.48 0.71 -13.12 16 11 H -0.27 -13.34 7.11 99.48 0.71 -12.63 16 12 H -0.26 -13.05 6.54 99.48 0.65 -12.40 16 13 C 0.13 4.78 5.14 85.56 0.44 5.22 16 14 C 0.08 3.06 5.92 43.10 0.26 3.31 16 15 N -0.34 -13.32 12.09 -47.39 -0.57 -13.89 16 16 N -0.48 -14.21 7.36 -48.00 -0.35 -14.56 16 17 H 0.45 10.04 8.96 -213.33 -1.91 8.13 16 18 C 0.08 2.15 7.21 41.41 0.30 2.45 16 19 C -0.08 -1.28 10.10 71.24 0.72 -0.56 16 20 C -0.24 -7.57 6.10 -20.14 -0.12 -7.69 16 21 C -0.06 -1.47 9.77 71.24 0.70 -0.77 16 22 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 23 H 0.07 1.63 6.65 -2.38 -0.02 1.62 16 24 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 25 H 0.06 2.55 6.59 -2.39 -0.02 2.53 16 26 H 0.03 1.06 8.06 -2.39 -0.02 1.04 16 27 H -0.02 -1.28 7.18 -2.39 -0.02 -1.29 16 28 H 0.02 1.09 6.17 -2.39 -0.01 1.07 16 29 H 0.27 16.02 8.31 -92.71 -0.77 15.25 16 30 H 0.03 1.09 8.07 -2.39 -0.02 1.07 16 31 H 0.12 3.41 5.53 -2.39 -0.01 3.40 16 32 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.09 1.32 7.89 -2.39 -0.02 1.30 16 34 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.08 1.44 8.00 -2.39 -0.02 1.42 16 37 H 0.06 1.50 7.25 -2.39 -0.02 1.48 16 Total: -1.00 -76.51 300.53 0.83 -75.68 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -0.91 Total: 8.68 kcal Atomic # 6 Polarization: -22.77 SS G_CDS: 4.48 Total: -18.29 kcal Atomic # 7 Polarization: -111.31 SS G_CDS: -4.62 Total: -115.94 kcal Atomic # 14 Polarization: 47.98 SS G_CDS: 1.88 Total: 49.87 kcal Total: -76.51 0.83 -75.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893922487.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.526 kcal (2) G-P(sol) polarization free energy of solvation -76.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds