Wall clock time and date at job start Sun Mar 29 2020 21:40:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 H 1.09003 * 109.47069 * 2 1
4 4 C 1.53000 * 109.47057 * 120.00424 * 2 1 3
5 5 C 1.50697 * 109.47063 * 294.99768 * 4 2 1
6 6 H 1.08003 * 120.00210 * 359.97438 * 5 4 2
7 7 C 1.37875 * 120.00193 * 180.02562 * 5 4 2
8 8 N 1.31510 * 120.00375 * 179.72379 * 7 5 4
9 9 Si 1.86801 * 119.99790 * 0.02562 * 7 5 4
10 10 H 1.48500 * 109.47041 * 269.72439 * 9 7 5
11 11 H 1.48502 * 109.47186 * 29.72486 * 9 7 5
12 12 H 1.48504 * 109.47217 * 149.72798 * 9 7 5
13 13 C 1.53007 * 109.46935 * 240.00353 * 2 1 3
14 14 N 1.46903 * 109.47044 * 174.76223 * 13 2 1
15 15 C 1.46903 * 110.99496 * 287.53721 * 14 13 2
16 16 C 1.46893 * 110.99925 * 163.58436 * 14 13 2
17 17 C 1.50701 * 109.46834 * 189.99681 * 16 14 13
18 18 N 1.30494 * 125.65191 * 275.01921 * 17 16 14
19 19 C 1.34129 * 109.25859 * 180.02562 * 18 17 16
20 20 C 1.34675 * 108.01851 * 359.97438 * 19 18 17
21 21 N 1.35049 * 125.64974 * 94.72093 * 17 16 14
22 22 H 0.97003 * 126.39699 * 359.97438 * 21 17 16
23 23 H 1.08999 * 109.46952 * 180.99983 * 1 2 3
24 24 H 1.09003 * 109.46603 * 301.00433 * 1 2 3
25 25 H 1.08997 * 109.46551 * 61.00044 * 1 2 3
26 26 H 1.09007 * 109.46975 * 174.99788 * 4 2 1
27 27 H 1.08992 * 109.47054 * 54.99812 * 4 2 1
28 28 H 0.97000 * 120.00639 * 180.27360 * 8 7 5
29 29 H 1.08999 * 109.47163 * 294.76062 * 13 2 1
30 30 H 1.09000 * 109.47317 * 54.76038 * 13 2 1
31 31 H 1.08995 * 109.47711 * 54.64201 * 15 14 13
32 32 H 1.09002 * 109.46803 * 174.64073 * 15 14 13
33 33 H 1.08998 * 109.47043 * 294.63148 * 15 14 13
34 34 H 1.09003 * 109.47220 * 309.99314 * 16 14 13
35 35 H 1.08997 * 109.47565 * 69.99711 * 16 14 13
36 36 H 1.07996 * 125.99469 * 180.02562 * 19 18 17
37 37 H 1.08000 * 126.59025 * 179.97438 * 20 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0400 -0.7213 1.2492
5 6 1.6414 0.0569 2.4765
6 1 1.0808 0.9745 2.3757
7 6 1.9933 -0.4019 3.7282
8 7 1.6501 0.2801 4.7990
9 14 2.9648 -1.9878 3.9026
10 1 2.0264 -3.1321 4.0260
11 1 3.8220 -2.1775 2.7048
12 1 3.8184 -1.9147 5.1156
13 6 2.0400 -0.7212 -1.2494
14 7 3.5036 -0.6127 -1.3143
15 6 3.9149 0.7516 -1.6716
16 6 4.0631 -1.5942 -2.2531
17 6 5.5634 -1.6239 -2.1137
18 7 6.3991 -0.8216 -2.7143
19 6 7.6521 -1.1392 -2.3562
20 6 7.5904 -2.1775 -1.5008
21 7 6.2653 -2.4818 -1.3423
22 1 5.8990 -3.1839 -0.7821
23 1 -0.3633 -1.0275 0.0179
24 1 -0.3632 0.5294 0.8809
25 1 -0.3632 0.4982 -0.8988
26 1 3.1264 -0.7996 1.2055
27 1 1.6054 -1.7198 1.2950
28 1 1.9011 -0.0406 5.6794
29 1 1.7553 -1.7724 -1.2037
30 1 1.6021 -0.2644 -2.1368
31 1 3.4667 1.4604 -0.9754
32 1 5.0009 0.8289 -1.6199
33 1 3.5825 0.9776 -2.6847
34 1 3.6579 -2.5814 -2.0310
35 1 3.7984 -1.3138 -3.2726
36 1 8.5525 -0.6478 -2.6939
37 1 8.4257 -2.6726 -1.0279
RHF calculation, no. of doubly occupied orbitals= 45
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000894586758.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:40:01
Heat of formation + Delta-G solvation = 53.627875 kcal
Electronic energy + Delta-G solvation = -17021.458907 eV
Core-core repulsion = 14413.593269 eV
Total energy + Delta-G solvation = -2607.865638 eV
No. of doubly occupied orbitals = 45
Molecular weight
(most abundant/longest-lived isotopes) = 237.154 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-41.96809 -37.78867 -34.49391 -32.41993 -32.09121 -30.17305 -27.70534 -27.01763
-26.19249 -23.06174 -21.82374 -21.39434 -20.38639 -18.86391 -17.78846 -16.71181
-15.83054 -15.16836 -14.58646 -14.36469 -14.15014 -13.88381 -13.59052 -13.30456
-12.75402 -12.46729 -12.34648 -12.05381 -11.54742 -11.47968 -11.22382 -11.01683
-10.81922 -10.43106 -10.01361 -9.94758 -9.70621 -9.66978 -9.39459 -8.95529
-8.46810 -8.43419 -7.97671 -5.95701 -3.90837 2.06430 3.09885 3.20387
3.33802 3.40994 3.46480 4.25626 4.52587 4.57429 4.94070 5.19613
5.32550 5.38883 5.45064 5.50121 5.66994 5.71568 5.88505 5.95455
5.98084 6.14398 6.17561 6.28357 6.34466 6.48118 6.76842 6.84130
6.97806 7.12437 7.26612 7.31182 7.43316 7.50268 7.68863 7.92709
8.12827 8.64913 9.10809 9.68456 11.18195
Molecular weight = 237.15amu
Principal moments of inertia in cm(-1)
A = 0.021899 B = 0.007280 C = 0.005962
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1278.267201 B = 3844.984808 C = 4695.001864
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.134 4.134
2 C -0.074 4.074
3 H 0.064 0.936
4 C -0.001 4.001
5 C -0.510 4.510
6 H 0.070 0.930
7 C 0.063 3.937
8 N -0.909 5.909
9 Si 0.878 3.122
10 H -0.281 1.281
11 H -0.265 1.265
12 H -0.291 1.291
13 C 0.061 3.939
14 N -0.531 5.531
15 C 0.028 3.972
16 C 0.136 3.864
17 C 0.226 3.774
18 N -0.490 5.490
19 C -0.031 4.031
20 C -0.059 4.059
21 N -0.557 5.557
22 H 0.420 0.580
23 H 0.044 0.956
24 H 0.068 0.932
25 H 0.031 0.969
26 H 0.029 0.971
27 H 0.003 0.997
28 H 0.260 0.740
29 H 0.067 0.933
30 H 0.028 0.972
31 H 0.073 0.927
32 H 0.072 0.928
33 H 0.022 0.978
34 H 0.086 0.914
35 H 0.062 0.938
36 H 0.167 0.833
37 H 0.174 0.826
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.536 -6.397 -14.500 17.549
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.192 4.192
2 C -0.093 4.093
3 H 0.082 0.918
4 C -0.038 4.038
5 C -0.548 4.548
6 H 0.089 0.911
7 C -0.137 4.137
8 N -0.549 5.549
9 Si 0.706 3.294
10 H -0.207 1.207
11 H -0.189 1.189
12 H -0.218 1.218
13 C -0.066 4.066
14 N -0.256 5.256
15 C -0.120 4.120
16 C 0.006 3.994
17 C -0.039 4.039
18 N -0.210 5.210
19 C -0.180 4.180
20 C -0.194 4.194
21 N -0.159 5.159
22 H 0.258 0.742
23 H 0.063 0.937
24 H 0.087 0.913
25 H 0.050 0.950
26 H 0.048 0.952
27 H 0.021 0.979
28 H 0.070 0.930
29 H 0.085 0.915
30 H 0.046 0.954
31 H 0.091 0.909
32 H 0.091 0.909
33 H 0.040 0.960
34 H 0.104 0.896
35 H 0.080 0.920
36 H 0.184 0.816
37 H 0.191 0.809
Dipole moment (debyes) X Y Z Total
from point charges 7.543 -5.844 -14.409 17.282
hybrid contribution 0.444 -1.646 0.451 1.763
sum 7.987 -7.490 -13.958 17.740
Atomic orbital electron populations
1.21714 0.95887 1.00932 1.00670 1.21037 0.94537 0.99542 0.94180
0.91810 1.19525 0.96987 0.94821 0.92511 1.21237 1.34778 1.09394
0.89419 0.91146 1.25013 0.95749 0.96912 0.95996 1.69919 1.47660
1.39346 0.97970 0.86792 0.80669 0.84420 0.77477 1.20679 1.18926
1.21782 1.22340 0.85225 1.00883 0.98148 1.61891 1.10842 1.04777
1.48085 1.22426 1.02010 0.89230 0.98376 1.20381 0.84881 0.97910
0.96224 1.23089 0.95639 0.90835 0.94303 1.70229 1.00484 1.24663
1.25644 1.22300 0.95731 0.98562 1.01376 1.22729 0.86190 1.03763
1.06676 1.43252 1.06981 1.29284 1.36414 0.74178 0.93712 0.91290
0.94960 0.95237 0.97859 0.93006 0.91453 0.95404 0.90859 0.90927
0.95955 0.89551 0.91954 0.81563 0.80882
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.44 8.99 37.16 0.33 -2.10 16
2 C -0.07 -1.44 2.36 -90.61 -0.21 -1.66 16
3 H 0.06 1.31 6.52 -51.93 -0.34 0.97 16
4 C 0.00 -0.03 3.46 -27.88 -0.10 -0.12 16
5 C -0.51 -14.50 8.97 -34.44 -0.31 -14.81 16
6 H 0.07 2.15 7.30 -52.48 -0.38 1.77 16
7 C 0.06 1.86 5.47 -17.82 -0.10 1.77 16
8 N -0.91 -28.42 13.96 55.43 0.77 -27.65 16
9 Si 0.88 22.08 27.47 -169.99 -4.67 17.41 16
10 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16
11 H -0.26 -6.40 6.54 56.52 0.37 -6.03 16
12 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16
13 C 0.06 0.97 4.37 -3.82 -0.02 0.95 16
14 N -0.53 -8.51 4.09 -244.37 -1.00 -9.50 16
15 C 0.03 0.44 9.16 60.07 0.55 0.99 16
16 C 0.14 1.80 5.58 -4.98 -0.03 1.78 16
17 C 0.23 3.21 6.91 -155.41 -1.07 2.14 16
18 N -0.49 -7.48 10.24 -10.81 -0.11 -7.59 16
19 C -0.03 -0.40 11.87 -17.81 -0.21 -0.61 16
20 C -0.06 -0.66 12.04 -16.56 -0.20 -0.86 16
21 N -0.56 -6.78 6.15 -10.23 -0.06 -6.84 16
22 H 0.42 4.19 8.96 -40.82 -0.37 3.82 16
23 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16
24 H 0.07 1.41 6.98 -51.93 -0.36 1.05 16
25 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16
26 H 0.03 0.73 6.68 -51.92 -0.35 0.39 16
27 H 0.00 0.07 7.57 -51.93 -0.39 -0.32 16
28 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16
29 H 0.07 1.00 7.80 -51.93 -0.41 0.60 16
30 H 0.03 0.40 8.05 -51.93 -0.42 -0.02 16
31 H 0.07 1.22 6.47 -51.93 -0.34 0.89 16
32 H 0.07 1.22 6.60 -51.93 -0.34 0.88 16
33 H 0.02 0.32 8.13 -51.93 -0.42 -0.10 16
34 H 0.09 0.98 7.86 -51.93 -0.41 0.57 16
35 H 0.06 0.78 8.11 -51.93 -0.42 0.36 16
36 H 0.17 1.69 8.06 -52.49 -0.42 1.27 16
37 H 0.17 1.33 8.06 -52.49 -0.42 0.91 16
LS Contribution 299.56 15.07 4.51 4.51
Total: -1.00 -33.19 299.56 -7.72 -40.91
By element:
Atomic # 1 Polarization: 7.10 SS G_CDS: -5.80 Total: 1.30 kcal
Atomic # 6 Polarization: -11.18 SS G_CDS: -1.36 Total: -12.55 kcal
Atomic # 7 Polarization: -51.18 SS G_CDS: -0.40 Total: -51.58 kcal
Atomic # 14 Polarization: 22.08 SS G_CDS: -4.67 Total: 17.41 kcal
Total LS contribution 4.51 Total: 4.51 kcal
Total: -33.19 -7.72 -40.91 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000894586758.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 94.536 kcal
(2) G-P(sol) polarization free energy of solvation -33.190 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.346 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.718 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.908 kcal
(6) G-S(sol) free energy of system = (1) + (5) 53.628 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds