Wall clock time and date at job start Sun Mar 29 2020 21:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.47069 * 2 1 4 4 C 1.53000 * 109.47057 * 120.00424 * 2 1 3 5 5 C 1.50697 * 109.47063 * 294.99768 * 4 2 1 6 6 H 1.08003 * 120.00210 * 359.97438 * 5 4 2 7 7 C 1.37875 * 120.00193 * 180.02562 * 5 4 2 8 8 N 1.31510 * 120.00375 * 179.72379 * 7 5 4 9 9 Si 1.86801 * 119.99790 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47041 * 269.72439 * 9 7 5 11 11 H 1.48502 * 109.47186 * 29.72486 * 9 7 5 12 12 H 1.48504 * 109.47217 * 149.72798 * 9 7 5 13 13 C 1.53007 * 109.46935 * 240.00353 * 2 1 3 14 14 N 1.46903 * 109.47044 * 174.76223 * 13 2 1 15 15 C 1.46903 * 110.99496 * 287.53721 * 14 13 2 16 16 C 1.46893 * 110.99925 * 163.58436 * 14 13 2 17 17 C 1.50701 * 109.46834 * 189.99681 * 16 14 13 18 18 N 1.30494 * 125.65191 * 275.01921 * 17 16 14 19 19 C 1.34129 * 109.25859 * 180.02562 * 18 17 16 20 20 C 1.34675 * 108.01851 * 359.97438 * 19 18 17 21 21 N 1.35049 * 125.64974 * 94.72093 * 17 16 14 22 22 H 0.97003 * 126.39699 * 359.97438 * 21 17 16 23 23 H 1.08999 * 109.46952 * 180.99983 * 1 2 3 24 24 H 1.09003 * 109.46603 * 301.00433 * 1 2 3 25 25 H 1.08997 * 109.46551 * 61.00044 * 1 2 3 26 26 H 1.09007 * 109.46975 * 174.99788 * 4 2 1 27 27 H 1.08992 * 109.47054 * 54.99812 * 4 2 1 28 28 H 0.97000 * 120.00639 * 180.27360 * 8 7 5 29 29 H 1.08999 * 109.47163 * 294.76062 * 13 2 1 30 30 H 1.09000 * 109.47317 * 54.76038 * 13 2 1 31 31 H 1.08995 * 109.47711 * 54.64201 * 15 14 13 32 32 H 1.09002 * 109.46803 * 174.64073 * 15 14 13 33 33 H 1.08998 * 109.47043 * 294.63148 * 15 14 13 34 34 H 1.09003 * 109.47220 * 309.99314 * 16 14 13 35 35 H 1.08997 * 109.47565 * 69.99711 * 16 14 13 36 36 H 1.07996 * 125.99469 * 180.02562 * 19 18 17 37 37 H 1.08000 * 126.59025 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6414 0.0569 2.4765 6 1 1.0808 0.9745 2.3757 7 6 1.9933 -0.4019 3.7282 8 7 1.6501 0.2801 4.7990 9 14 2.9648 -1.9878 3.9026 10 1 2.0264 -3.1321 4.0260 11 1 3.8220 -2.1775 2.7048 12 1 3.8184 -1.9147 5.1156 13 6 2.0400 -0.7212 -1.2494 14 7 3.5036 -0.6127 -1.3143 15 6 3.9149 0.7516 -1.6716 16 6 4.0631 -1.5942 -2.2531 17 6 5.5634 -1.6239 -2.1137 18 7 6.3991 -0.8216 -2.7143 19 6 7.6521 -1.1392 -2.3562 20 6 7.5904 -2.1775 -1.5008 21 7 6.2653 -2.4818 -1.3423 22 1 5.8990 -3.1839 -0.7821 23 1 -0.3633 -1.0275 0.0179 24 1 -0.3632 0.5294 0.8809 25 1 -0.3632 0.4982 -0.8988 26 1 3.1264 -0.7996 1.2055 27 1 1.6054 -1.7198 1.2950 28 1 1.9011 -0.0406 5.6794 29 1 1.7553 -1.7724 -1.2037 30 1 1.6021 -0.2644 -2.1368 31 1 3.4667 1.4604 -0.9754 32 1 5.0009 0.8289 -1.6199 33 1 3.5825 0.9776 -2.6847 34 1 3.6579 -2.5814 -2.0310 35 1 3.7984 -1.3138 -3.2726 36 1 8.5525 -0.6478 -2.6939 37 1 8.4257 -2.6726 -1.0279 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894586758.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:01 Heat of formation + Delta-G solvation = 53.627875 kcal Electronic energy + Delta-G solvation = -17021.458907 eV Core-core repulsion = 14413.593269 eV Total energy + Delta-G solvation = -2607.865638 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.96809 -37.78867 -34.49391 -32.41993 -32.09121 -30.17305 -27.70534 -27.01763 -26.19249 -23.06174 -21.82374 -21.39434 -20.38639 -18.86391 -17.78846 -16.71181 -15.83054 -15.16836 -14.58646 -14.36469 -14.15014 -13.88381 -13.59052 -13.30456 -12.75402 -12.46729 -12.34648 -12.05381 -11.54742 -11.47968 -11.22382 -11.01683 -10.81922 -10.43106 -10.01361 -9.94758 -9.70621 -9.66978 -9.39459 -8.95529 -8.46810 -8.43419 -7.97671 -5.95701 -3.90837 2.06430 3.09885 3.20387 3.33802 3.40994 3.46480 4.25626 4.52587 4.57429 4.94070 5.19613 5.32550 5.38883 5.45064 5.50121 5.66994 5.71568 5.88505 5.95455 5.98084 6.14398 6.17561 6.28357 6.34466 6.48118 6.76842 6.84130 6.97806 7.12437 7.26612 7.31182 7.43316 7.50268 7.68863 7.92709 8.12827 8.64913 9.10809 9.68456 11.18195 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.021899 B = 0.007280 C = 0.005962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.267201 B = 3844.984808 C = 4695.001864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.074 4.074 3 H 0.064 0.936 4 C -0.001 4.001 5 C -0.510 4.510 6 H 0.070 0.930 7 C 0.063 3.937 8 N -0.909 5.909 9 Si 0.878 3.122 10 H -0.281 1.281 11 H -0.265 1.265 12 H -0.291 1.291 13 C 0.061 3.939 14 N -0.531 5.531 15 C 0.028 3.972 16 C 0.136 3.864 17 C 0.226 3.774 18 N -0.490 5.490 19 C -0.031 4.031 20 C -0.059 4.059 21 N -0.557 5.557 22 H 0.420 0.580 23 H 0.044 0.956 24 H 0.068 0.932 25 H 0.031 0.969 26 H 0.029 0.971 27 H 0.003 0.997 28 H 0.260 0.740 29 H 0.067 0.933 30 H 0.028 0.972 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.022 0.978 34 H 0.086 0.914 35 H 0.062 0.938 36 H 0.167 0.833 37 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.536 -6.397 -14.500 17.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.093 4.093 3 H 0.082 0.918 4 C -0.038 4.038 5 C -0.548 4.548 6 H 0.089 0.911 7 C -0.137 4.137 8 N -0.549 5.549 9 Si 0.706 3.294 10 H -0.207 1.207 11 H -0.189 1.189 12 H -0.218 1.218 13 C -0.066 4.066 14 N -0.256 5.256 15 C -0.120 4.120 16 C 0.006 3.994 17 C -0.039 4.039 18 N -0.210 5.210 19 C -0.180 4.180 20 C -0.194 4.194 21 N -0.159 5.159 22 H 0.258 0.742 23 H 0.063 0.937 24 H 0.087 0.913 25 H 0.050 0.950 26 H 0.048 0.952 27 H 0.021 0.979 28 H 0.070 0.930 29 H 0.085 0.915 30 H 0.046 0.954 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.040 0.960 34 H 0.104 0.896 35 H 0.080 0.920 36 H 0.184 0.816 37 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 7.543 -5.844 -14.409 17.282 hybrid contribution 0.444 -1.646 0.451 1.763 sum 7.987 -7.490 -13.958 17.740 Atomic orbital electron populations 1.21714 0.95887 1.00932 1.00670 1.21037 0.94537 0.99542 0.94180 0.91810 1.19525 0.96987 0.94821 0.92511 1.21237 1.34778 1.09394 0.89419 0.91146 1.25013 0.95749 0.96912 0.95996 1.69919 1.47660 1.39346 0.97970 0.86792 0.80669 0.84420 0.77477 1.20679 1.18926 1.21782 1.22340 0.85225 1.00883 0.98148 1.61891 1.10842 1.04777 1.48085 1.22426 1.02010 0.89230 0.98376 1.20381 0.84881 0.97910 0.96224 1.23089 0.95639 0.90835 0.94303 1.70229 1.00484 1.24663 1.25644 1.22300 0.95731 0.98562 1.01376 1.22729 0.86190 1.03763 1.06676 1.43252 1.06981 1.29284 1.36414 0.74178 0.93712 0.91290 0.94960 0.95237 0.97859 0.93006 0.91453 0.95404 0.90859 0.90927 0.95955 0.89551 0.91954 0.81563 0.80882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.44 8.99 37.16 0.33 -2.10 16 2 C -0.07 -1.44 2.36 -90.61 -0.21 -1.66 16 3 H 0.06 1.31 6.52 -51.93 -0.34 0.97 16 4 C 0.00 -0.03 3.46 -27.88 -0.10 -0.12 16 5 C -0.51 -14.50 8.97 -34.44 -0.31 -14.81 16 6 H 0.07 2.15 7.30 -52.48 -0.38 1.77 16 7 C 0.06 1.86 5.47 -17.82 -0.10 1.77 16 8 N -0.91 -28.42 13.96 55.43 0.77 -27.65 16 9 Si 0.88 22.08 27.47 -169.99 -4.67 17.41 16 10 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.26 -6.40 6.54 56.52 0.37 -6.03 16 12 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 13 C 0.06 0.97 4.37 -3.82 -0.02 0.95 16 14 N -0.53 -8.51 4.09 -244.37 -1.00 -9.50 16 15 C 0.03 0.44 9.16 60.07 0.55 0.99 16 16 C 0.14 1.80 5.58 -4.98 -0.03 1.78 16 17 C 0.23 3.21 6.91 -155.41 -1.07 2.14 16 18 N -0.49 -7.48 10.24 -10.81 -0.11 -7.59 16 19 C -0.03 -0.40 11.87 -17.81 -0.21 -0.61 16 20 C -0.06 -0.66 12.04 -16.56 -0.20 -0.86 16 21 N -0.56 -6.78 6.15 -10.23 -0.06 -6.84 16 22 H 0.42 4.19 8.96 -40.82 -0.37 3.82 16 23 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.07 1.41 6.98 -51.93 -0.36 1.05 16 25 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.03 0.73 6.68 -51.92 -0.35 0.39 16 27 H 0.00 0.07 7.57 -51.93 -0.39 -0.32 16 28 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 29 H 0.07 1.00 7.80 -51.93 -0.41 0.60 16 30 H 0.03 0.40 8.05 -51.93 -0.42 -0.02 16 31 H 0.07 1.22 6.47 -51.93 -0.34 0.89 16 32 H 0.07 1.22 6.60 -51.93 -0.34 0.88 16 33 H 0.02 0.32 8.13 -51.93 -0.42 -0.10 16 34 H 0.09 0.98 7.86 -51.93 -0.41 0.57 16 35 H 0.06 0.78 8.11 -51.93 -0.42 0.36 16 36 H 0.17 1.69 8.06 -52.49 -0.42 1.27 16 37 H 0.17 1.33 8.06 -52.49 -0.42 0.91 16 LS Contribution 299.56 15.07 4.51 4.51 Total: -1.00 -33.19 299.56 -7.72 -40.91 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -5.80 Total: 1.30 kcal Atomic # 6 Polarization: -11.18 SS G_CDS: -1.36 Total: -12.55 kcal Atomic # 7 Polarization: -51.18 SS G_CDS: -0.40 Total: -51.58 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.67 Total: 17.41 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -33.19 -7.72 -40.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894586758.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.536 kcal (2) G-P(sol) polarization free energy of solvation -33.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds