Wall clock time and date at job start Sun Mar 29 2020 21:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.47069 * 2 1 4 4 C 1.53000 * 109.47057 * 120.00424 * 2 1 3 5 5 C 1.50697 * 109.47063 * 294.99768 * 4 2 1 6 6 H 1.08003 * 120.00210 * 359.97438 * 5 4 2 7 7 C 1.37875 * 120.00193 * 180.02562 * 5 4 2 8 8 N 1.31510 * 120.00375 * 179.72379 * 7 5 4 9 9 Si 1.86801 * 119.99790 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47041 * 269.72439 * 9 7 5 11 11 H 1.48502 * 109.47186 * 29.72486 * 9 7 5 12 12 H 1.48504 * 109.47217 * 149.72798 * 9 7 5 13 13 C 1.53007 * 109.46935 * 240.00353 * 2 1 3 14 14 N 1.46903 * 109.47044 * 174.76223 * 13 2 1 15 15 C 1.46903 * 110.99496 * 287.53721 * 14 13 2 16 16 C 1.46893 * 110.99925 * 163.58436 * 14 13 2 17 17 C 1.50701 * 109.46834 * 189.99681 * 16 14 13 18 18 N 1.30494 * 125.65191 * 275.01921 * 17 16 14 19 19 C 1.34129 * 109.25859 * 180.02562 * 18 17 16 20 20 C 1.34675 * 108.01851 * 359.97438 * 19 18 17 21 21 N 1.35049 * 125.64974 * 94.72093 * 17 16 14 22 22 H 0.97003 * 126.39699 * 359.97438 * 21 17 16 23 23 H 1.08999 * 109.46952 * 180.99983 * 1 2 3 24 24 H 1.09003 * 109.46603 * 301.00433 * 1 2 3 25 25 H 1.08997 * 109.46551 * 61.00044 * 1 2 3 26 26 H 1.09007 * 109.46975 * 174.99788 * 4 2 1 27 27 H 1.08992 * 109.47054 * 54.99812 * 4 2 1 28 28 H 0.97000 * 120.00639 * 180.27360 * 8 7 5 29 29 H 1.08999 * 109.47163 * 294.76062 * 13 2 1 30 30 H 1.09000 * 109.47317 * 54.76038 * 13 2 1 31 31 H 1.08995 * 109.47711 * 54.64201 * 15 14 13 32 32 H 1.09002 * 109.46803 * 174.64073 * 15 14 13 33 33 H 1.08998 * 109.47043 * 294.63148 * 15 14 13 34 34 H 1.09003 * 109.47220 * 309.99314 * 16 14 13 35 35 H 1.08997 * 109.47565 * 69.99711 * 16 14 13 36 36 H 1.07996 * 125.99469 * 180.02562 * 19 18 17 37 37 H 1.08000 * 126.59025 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6414 0.0569 2.4765 6 1 1.0808 0.9745 2.3757 7 6 1.9933 -0.4019 3.7282 8 7 1.6501 0.2801 4.7990 9 14 2.9648 -1.9878 3.9026 10 1 2.0264 -3.1321 4.0260 11 1 3.8220 -2.1775 2.7048 12 1 3.8184 -1.9147 5.1156 13 6 2.0400 -0.7212 -1.2494 14 7 3.5036 -0.6127 -1.3143 15 6 3.9149 0.7516 -1.6716 16 6 4.0631 -1.5942 -2.2531 17 6 5.5634 -1.6239 -2.1137 18 7 6.3991 -0.8216 -2.7143 19 6 7.6521 -1.1392 -2.3562 20 6 7.5904 -2.1775 -1.5008 21 7 6.2653 -2.4818 -1.3423 22 1 5.8990 -3.1839 -0.7821 23 1 -0.3633 -1.0275 0.0179 24 1 -0.3632 0.5294 0.8809 25 1 -0.3632 0.4982 -0.8988 26 1 3.1264 -0.7996 1.2055 27 1 1.6054 -1.7198 1.2950 28 1 1.9011 -0.0406 5.6794 29 1 1.7553 -1.7724 -1.2037 30 1 1.6021 -0.2644 -2.1368 31 1 3.4667 1.4604 -0.9754 32 1 5.0009 0.8289 -1.6199 33 1 3.5825 0.9776 -2.6847 34 1 3.6579 -2.5814 -2.0310 35 1 3.7984 -1.3138 -3.2726 36 1 8.5525 -0.6478 -2.6939 37 1 8.4257 -2.6726 -1.0279 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894586758.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:00 Heat of formation + Delta-G solvation = 30.754306 kcal Electronic energy + Delta-G solvation = -17022.450779 eV Core-core repulsion = 14413.593269 eV Total energy + Delta-G solvation = -2608.857511 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.89804 -39.08251 -36.10239 -34.15550 -33.37712 -31.24943 -29.61124 -28.17981 -27.39484 -24.77599 -23.26894 -22.34623 -21.36192 -20.43818 -18.94611 -18.66294 -17.02910 -16.49086 -16.12239 -15.62096 -15.48070 -14.98515 -14.79138 -14.61646 -14.46347 -13.96333 -13.66525 -13.56190 -13.07630 -12.81189 -12.68585 -12.58162 -12.40302 -12.10508 -11.69270 -11.37804 -11.13252 -11.00195 -10.94389 -10.91889 -10.68781 -9.41694 -9.12082 -8.22153 -6.22576 1.14167 1.35063 1.38470 1.51177 2.13545 2.33905 2.41091 3.14174 3.16547 3.60727 3.99114 4.12264 4.29980 4.41347 4.45371 4.55531 4.58941 4.62810 4.67402 4.81373 4.84500 4.91501 4.93422 5.13003 5.17201 5.24776 5.40236 5.51560 5.64167 5.74308 5.82417 5.87148 6.10788 6.19647 6.40617 6.54649 6.85659 7.18736 7.40485 8.95031 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.021899 B = 0.007280 C = 0.005962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.267201 B = 3844.984808 C = 4695.001864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.073 4.073 3 H 0.044 0.956 4 C 0.008 3.992 5 C -0.515 4.515 6 H 0.030 0.970 7 C -0.003 4.003 8 N -0.959 5.959 9 Si 0.950 3.050 10 H -0.267 1.267 11 H -0.245 1.245 12 H -0.292 1.292 13 C 0.072 3.928 14 N -0.551 5.551 15 C 0.037 3.963 16 C 0.139 3.861 17 C 0.204 3.796 18 N -0.521 5.521 19 C -0.060 4.060 20 C -0.045 4.045 21 N -0.555 5.555 22 H 0.431 0.569 23 H 0.056 0.944 24 H 0.032 0.968 25 H 0.063 0.937 26 H 0.022 0.978 27 H 0.011 0.989 28 H 0.262 0.738 29 H 0.085 0.915 30 H 0.050 0.950 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.035 0.965 34 H 0.109 0.891 35 H 0.070 0.930 36 H 0.183 0.817 37 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.472 -8.839 -15.987 20.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.092 4.092 3 H 0.062 0.938 4 C -0.029 4.029 5 C -0.553 4.553 6 H 0.048 0.952 7 C -0.198 4.198 8 N -0.601 5.601 9 Si 0.774 3.226 10 H -0.192 1.192 11 H -0.169 1.169 12 H -0.218 1.218 13 C -0.056 4.056 14 N -0.276 5.276 15 C -0.111 4.111 16 C 0.010 3.990 17 C -0.061 4.061 18 N -0.242 5.242 19 C -0.208 4.208 20 C -0.180 4.180 21 N -0.158 5.158 22 H 0.270 0.730 23 H 0.075 0.925 24 H 0.051 0.949 25 H 0.082 0.918 26 H 0.040 0.960 27 H 0.030 0.970 28 H 0.070 0.930 29 H 0.104 0.896 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.054 0.946 34 H 0.127 0.873 35 H 0.088 0.912 36 H 0.201 0.799 37 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 8.469 -8.294 -15.919 19.848 hybrid contribution 0.160 -0.789 0.918 1.221 sum 8.629 -9.084 -15.001 19.545 Atomic orbital electron populations 1.21633 0.94979 1.01553 1.00518 1.20951 0.95370 0.98501 0.94371 0.93781 1.19406 0.96436 0.94780 0.92306 1.21604 1.33638 1.08420 0.91643 0.95204 1.26014 0.97167 1.01075 0.95579 1.70090 1.49617 1.41741 0.98659 0.85651 0.79326 0.79641 0.77942 1.19237 1.16886 1.21829 1.22164 0.85337 1.01448 0.96606 1.61797 1.10967 1.05084 1.49734 1.22261 1.00951 0.89340 0.98572 1.20438 0.84500 0.98076 0.95960 1.23225 0.96036 0.91590 0.95213 1.70167 1.01717 1.25626 1.26682 1.22761 0.95726 0.99800 1.02516 1.23316 0.86676 1.02743 1.05290 1.43321 1.07260 1.29167 1.36075 0.72977 0.92495 0.94882 0.91830 0.95983 0.97024 0.92951 0.89650 0.93207 0.92661 0.92239 0.94613 0.87317 0.91192 0.79945 0.77348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.53 8.99 71.98 0.65 -3.89 16 2 C -0.07 -2.76 2.36 -10.79 -0.03 -2.79 16 3 H 0.04 1.83 6.52 -2.39 -0.02 1.81 16 4 C 0.01 0.38 3.46 29.85 0.10 0.48 16 5 C -0.51 -29.93 8.97 25.60 0.23 -29.70 16 6 H 0.03 1.92 7.30 -2.91 -0.02 1.89 16 7 C 0.00 -0.19 5.47 84.65 0.46 0.27 16 8 N -0.96 -61.62 13.96 21.45 0.30 -61.32 16 9 Si 0.95 45.13 27.47 68.60 1.88 47.01 16 10 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 11 H -0.25 -10.79 6.54 99.48 0.65 -10.14 16 12 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 13 C 0.07 2.05 4.37 86.31 0.38 2.43 16 14 N -0.55 -16.41 4.09 -927.05 -3.79 -20.20 16 15 C 0.04 1.14 9.16 127.69 1.17 2.31 16 16 C 0.14 3.31 5.58 85.56 0.48 3.79 16 17 C 0.20 5.37 6.91 138.13 0.95 6.32 16 18 N -0.52 -15.23 10.24 -188.13 -1.93 -17.16 16 19 C -0.06 -1.45 11.87 83.52 0.99 -0.46 16 20 C -0.05 -0.89 12.04 83.09 1.00 0.11 16 21 N -0.55 -11.98 6.15 -186.27 -1.15 -13.12 16 22 H 0.43 7.20 8.96 -92.71 -0.83 6.37 16 23 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 24 H 0.03 1.37 6.98 -2.39 -0.02 1.35 16 25 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 26 H 0.02 1.06 6.68 -2.38 -0.02 1.04 16 27 H 0.01 0.52 7.57 -2.39 -0.02 0.50 16 28 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 29 H 0.09 2.17 7.80 -2.39 -0.02 2.16 16 30 H 0.05 1.24 8.05 -2.39 -0.02 1.22 16 31 H 0.05 1.86 6.47 -2.39 -0.02 1.84 16 32 H 0.06 1.98 6.60 -2.39 -0.02 1.96 16 33 H 0.04 0.98 8.13 -2.39 -0.02 0.96 16 34 H 0.11 2.05 7.86 -2.39 -0.02 2.03 16 35 H 0.07 1.55 8.11 -2.39 -0.02 1.53 16 36 H 0.18 3.45 8.06 -2.91 -0.02 3.42 16 37 H 0.21 2.38 8.06 -2.91 -0.02 2.36 16 Total: -1.00 -73.31 299.56 1.87 -71.44 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: 0.16 Total: 14.46 kcal Atomic # 6 Polarization: -27.50 SS G_CDS: 6.39 Total: -21.11 kcal Atomic # 7 Polarization: -105.23 SS G_CDS: -6.56 Total: -111.80 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 1.88 Total: 47.01 kcal Total: -73.31 1.87 -71.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894586758.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.190 kcal (2) G-P(sol) polarization free energy of solvation -73.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds