Wall clock time and date at job start Sun Mar 29 2020 21:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47485 * 110.99871 * 2 1 4 4 C 1.53508 * 87.93037 * 138.70797 * 3 2 1 5 5 C 1.47473 * 111.00211 * 95.97206 * 2 1 3 6 6 H 1.09000 * 113.47695 * 336.06565 * 5 2 1 7 7 C 1.53000 * 113.47821 * 106.53338 * 5 2 1 8 8 N 1.46903 * 109.46606 * 285.49555 * 7 5 2 9 9 C 1.46907 * 110.99825 * 179.97438 * 8 7 5 10 10 C 1.52993 * 109.47200 * 179.97438 * 9 8 7 11 11 H 1.09000 * 109.47207 * 305.00308 * 10 9 8 12 12 C 1.47201 * 109.47161 * 64.99928 * 10 9 8 13 13 N 5.37874 * 69.55715 * 180.09460 * 2 1 3 14 14 C 1.53001 * 109.47450 * 184.99718 * 10 9 8 15 15 C 1.50693 * 109.47335 * 174.99831 * 14 10 9 16 16 H 1.07999 * 120.00326 * 0.02562 * 15 14 10 17 17 C 1.37880 * 120.00162 * 180.02562 * 15 14 10 18 18 N 1.31516 * 119.99754 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00356 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47036 * 89.99948 * 19 17 15 21 21 H 1.48498 * 109.47184 * 210.00321 * 19 17 15 22 22 H 1.48499 * 109.47166 * 330.00061 * 19 17 15 23 23 H 1.09002 * 109.47401 * 81.52489 * 1 2 3 24 24 H 1.09001 * 109.46874 * 321.52502 * 1 2 3 25 25 H 1.09004 * 109.46970 * 201.52635 * 1 2 3 26 26 H 1.09002 * 113.47414 * 253.47410 * 3 2 1 27 27 H 1.08997 * 113.47522 * 23.93637 * 3 2 1 28 28 H 1.08995 * 114.17315 * 87.62449 * 4 3 2 29 29 H 1.09005 * 114.17201 * 220.13906 * 4 3 2 30 30 H 1.08999 * 109.46977 * 45.49177 * 7 5 2 31 31 H 1.09000 * 109.47523 * 165.49569 * 7 5 2 32 32 H 1.00906 * 111.00223 * 303.94889 * 8 7 5 33 33 H 1.08997 * 109.46799 * 299.99760 * 9 8 7 34 34 H 1.09004 * 109.47042 * 59.99506 * 9 8 7 35 35 H 1.08994 * 109.47247 * 295.00666 * 14 10 9 36 36 H 1.09004 * 109.46501 * 55.00277 * 14 10 9 37 37 H 0.96996 * 120.00135 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9975 1.3769 0.0000 4 6 3.0537 0.9121 1.0123 5 6 1.9976 -0.1432 1.3693 6 1 1.3001 0.1839 2.1404 7 6 2.5888 -1.5256 1.6529 8 7 1.5010 -2.4994 1.8155 9 6 2.0324 -3.8414 2.0892 10 6 0.8725 -4.8255 2.2526 11 1 0.1930 -4.4616 3.0233 12 6 0.1479 -4.9463 0.9770 13 7 -0.4096 -5.0400 -0.0083 14 6 1.4193 -6.1952 2.6601 15 6 0.2719 -7.1310 2.9403 16 1 -0.7456 -6.7839 2.8377 17 6 0.5210 -8.4306 3.3279 18 7 1.7601 -8.8533 3.4534 19 14 -0.9012 -9.5909 3.6746 20 1 -1.2787 -10.2986 2.4248 21 1 -0.4918 -10.5830 4.7009 22 1 -2.0639 -8.8136 4.1737 23 1 -0.3634 0.1515 -1.0164 24 1 -0.3633 0.8046 0.6394 25 1 -0.3633 -0.9560 0.3771 26 1 2.4186 1.6803 -0.9585 27 1 1.3000 2.1097 0.4056 28 1 3.9571 0.5040 0.5592 29 1 3.2574 1.6305 1.8065 30 1 3.2246 -1.8266 0.8203 31 1 3.1814 -1.4868 2.5670 32 1 0.8609 -2.2090 2.5395 33 1 2.6640 -4.1582 1.2593 34 1 2.6214 -3.8189 3.0061 35 1 2.0281 -6.5987 1.8511 36 1 2.0300 -6.0904 3.5569 37 1 1.9354 -9.7676 3.7256 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905854251.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:50 Heat of formation + Delta-G solvation = 50.635625 kcal Electronic energy + Delta-G solvation = -16385.330888 eV Core-core repulsion = 13777.335496 eV Total energy + Delta-G solvation = -2607.995392 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.26536 -37.17988 -35.00299 -33.46854 -31.67578 -30.68018 -28.19084 -25.85859 -24.25177 -23.07742 -22.18597 -21.65215 -19.81804 -17.06599 -16.39577 -16.19087 -15.44998 -15.38763 -14.68200 -14.24092 -13.99073 -13.85401 -13.25581 -13.00519 -12.78942 -12.30465 -11.94089 -11.84909 -11.69380 -11.54853 -11.35669 -11.20682 -11.03519 -10.95697 -10.74195 -10.62831 -10.41783 -10.20372 -9.51092 -9.21198 -8.94512 -8.44612 -8.21269 -6.08407 -4.11450 3.30766 3.37267 3.40422 3.79277 3.85568 3.89726 4.15644 4.37694 4.44188 4.74940 4.95471 5.05320 5.15299 5.18513 5.23945 5.29790 5.34498 5.45450 5.52541 5.58315 5.68177 5.77734 5.84095 5.98127 6.03263 6.06036 6.33193 6.43380 6.52445 6.99742 7.15671 7.43930 7.52869 7.56542 7.87030 8.24824 8.64378 8.93451 9.53932 11.02561 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.048019 B = 0.004386 C = 0.004151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.959287 B = 6382.441118 C = 6743.496137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.008 4.008 2 N -0.458 5.458 3 C -0.009 4.009 4 C -0.142 4.142 5 C 0.031 3.969 6 H 0.074 0.926 7 C 0.077 3.923 8 N -0.689 5.689 9 C 0.068 3.932 10 C 0.010 3.990 11 H 0.097 0.903 12 C 0.255 3.745 13 N -0.479 5.479 14 C 0.031 3.969 15 C -0.526 4.526 16 H 0.057 0.943 17 C 0.062 3.938 18 N -0.892 5.892 19 Si 0.891 3.109 20 H -0.280 1.280 21 H -0.285 1.285 22 H -0.273 1.273 23 H 0.065 0.935 24 H 0.027 0.973 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.064 0.936 28 H 0.094 0.906 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.035 0.965 32 H 0.336 0.664 33 H 0.077 0.923 34 H 0.048 0.952 35 H 0.026 0.974 36 H 0.037 0.963 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.074 19.342 -0.271 19.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 N -0.180 5.180 3 C -0.138 4.138 4 C -0.180 4.180 5 C -0.079 4.079 6 H 0.092 0.908 7 C -0.053 4.053 8 N -0.320 5.320 9 C -0.062 4.062 10 C -0.012 4.012 11 H 0.115 0.885 12 C -0.062 4.062 13 N -0.155 5.155 14 C -0.007 4.007 15 C -0.564 4.564 16 H 0.075 0.925 17 C -0.140 4.140 18 N -0.531 5.531 19 Si 0.719 3.281 20 H -0.206 1.206 21 H -0.211 1.211 22 H -0.198 1.198 23 H 0.084 0.916 24 H 0.046 0.954 25 H 0.100 0.900 26 H 0.101 0.899 27 H 0.083 0.917 28 H 0.112 0.888 29 H 0.092 0.908 30 H 0.098 0.902 31 H 0.053 0.947 32 H 0.153 0.847 33 H 0.095 0.905 34 H 0.066 0.934 35 H 0.044 0.956 36 H 0.055 0.945 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.412 18.440 -2.930 18.826 hybrid contribution -0.704 -0.093 2.110 2.226 sum 1.708 18.347 -0.820 18.444 Atomic orbital electron populations 1.22853 0.89272 1.02001 1.01564 1.68889 1.09660 1.17365 1.22104 1.23805 0.97381 0.92294 1.00332 1.23183 0.97767 0.98026 0.99013 1.23411 0.96653 0.95653 0.92158 0.90773 1.21870 0.93173 0.90033 1.00212 1.60466 1.17832 1.02128 1.51535 1.22054 0.96213 0.87207 1.00735 1.19200 0.94565 0.99796 0.87635 0.88495 1.28839 0.92612 0.90623 0.94110 1.80977 1.10711 1.11252 1.12610 1.19165 0.96866 0.87133 0.97570 1.21150 0.92712 0.96095 1.46448 0.92520 1.24954 0.95599 0.98169 0.95249 1.69939 1.18502 1.17279 1.47354 0.86592 0.82600 0.80784 0.78103 1.20629 1.21115 1.19761 0.91633 0.95405 0.90005 0.89923 0.91744 0.88752 0.90792 0.90184 0.94736 0.84714 0.90500 0.93426 0.95555 0.94488 0.92810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.09 9.67 60.07 0.58 0.49 16 2 N -0.46 -5.36 6.52 -244.81 -1.60 -6.96 16 3 C -0.01 -0.08 7.70 -7.55 -0.06 -0.14 16 4 C -0.14 -1.16 8.01 -26.20 -0.21 -1.37 16 5 C 0.03 0.31 3.27 -71.44 -0.23 0.08 16 6 H 0.07 0.70 7.89 -51.93 -0.41 0.29 16 7 C 0.08 0.86 5.70 -3.82 -0.02 0.84 16 8 N -0.69 -9.09 6.20 -113.78 -0.71 -9.79 16 9 C 0.07 1.01 5.05 -3.82 -0.02 1.00 16 10 C 0.01 0.19 2.35 -93.41 -0.22 -0.03 16 11 H 0.10 1.65 8.14 -51.93 -0.42 1.23 16 12 C 0.26 5.45 13.67 -20.76 -0.28 5.17 16 13 N -0.48 -11.16 18.54 42.15 0.78 -10.38 16 14 C 0.03 0.73 4.42 -27.89 -0.12 0.61 16 15 C -0.53 -14.12 8.60 -34.44 -0.30 -14.41 16 16 H 0.06 1.52 7.59 -52.49 -0.40 1.12 16 17 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 18 N -0.89 -25.70 13.29 55.43 0.74 -24.97 16 19 Si 0.89 21.44 29.54 -169.99 -5.02 16.41 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 22 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 23 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.03 0.27 7.55 -51.93 -0.39 -0.12 16 25 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 26 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.51 7.58 -51.93 -0.39 0.12 16 28 H 0.09 0.78 8.12 -51.93 -0.42 0.35 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.34 3.96 8.73 -39.29 -0.34 3.62 16 33 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 34 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 314.62 15.07 4.74 4.74 Total: -1.00 -30.67 314.62 -8.19 -38.86 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: -6.14 Total: -1.78 kcal Atomic # 6 Polarization: -5.15 SS G_CDS: -0.98 Total: -6.14 kcal Atomic # 7 Polarization: -51.32 SS G_CDS: -0.78 Total: -52.10 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.67 -8.19 -38.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905854251.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.497 kcal (2) G-P(sol) polarization free energy of solvation -30.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds