Wall clock time and date at job start Sun Mar 29 2020 21:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47485 * 110.99871 * 2 1 4 4 C 1.53508 * 87.93037 * 138.70797 * 3 2 1 5 5 C 1.47473 * 111.00211 * 95.97206 * 2 1 3 6 6 H 1.09000 * 113.47695 * 336.06565 * 5 2 1 7 7 C 1.53000 * 113.47821 * 106.53338 * 5 2 1 8 8 N 1.46903 * 109.46606 * 285.49555 * 7 5 2 9 9 C 1.46907 * 110.99825 * 179.97438 * 8 7 5 10 10 C 1.52993 * 109.47200 * 179.97438 * 9 8 7 11 11 H 1.09000 * 109.47207 * 305.00308 * 10 9 8 12 12 C 1.47201 * 109.47161 * 64.99928 * 10 9 8 13 13 N 5.37874 * 69.55715 * 180.09460 * 2 1 3 14 14 C 1.53001 * 109.47450 * 184.99718 * 10 9 8 15 15 C 1.50693 * 109.47335 * 174.99831 * 14 10 9 16 16 H 1.07999 * 120.00326 * 0.02562 * 15 14 10 17 17 C 1.37880 * 120.00162 * 180.02562 * 15 14 10 18 18 N 1.31516 * 119.99754 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00356 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47036 * 89.99948 * 19 17 15 21 21 H 1.48498 * 109.47184 * 210.00321 * 19 17 15 22 22 H 1.48499 * 109.47166 * 330.00061 * 19 17 15 23 23 H 1.09002 * 109.47401 * 81.52489 * 1 2 3 24 24 H 1.09001 * 109.46874 * 321.52502 * 1 2 3 25 25 H 1.09004 * 109.46970 * 201.52635 * 1 2 3 26 26 H 1.09002 * 113.47414 * 253.47410 * 3 2 1 27 27 H 1.08997 * 113.47522 * 23.93637 * 3 2 1 28 28 H 1.08995 * 114.17315 * 87.62449 * 4 3 2 29 29 H 1.09005 * 114.17201 * 220.13906 * 4 3 2 30 30 H 1.08999 * 109.46977 * 45.49177 * 7 5 2 31 31 H 1.09000 * 109.47523 * 165.49569 * 7 5 2 32 32 H 1.00906 * 111.00223 * 303.94889 * 8 7 5 33 33 H 1.08997 * 109.46799 * 299.99760 * 9 8 7 34 34 H 1.09004 * 109.47042 * 59.99506 * 9 8 7 35 35 H 1.08994 * 109.47247 * 295.00666 * 14 10 9 36 36 H 1.09004 * 109.46501 * 55.00277 * 14 10 9 37 37 H 0.96996 * 120.00135 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9975 1.3769 0.0000 4 6 3.0537 0.9121 1.0123 5 6 1.9976 -0.1432 1.3693 6 1 1.3001 0.1839 2.1404 7 6 2.5888 -1.5256 1.6529 8 7 1.5010 -2.4994 1.8155 9 6 2.0324 -3.8414 2.0892 10 6 0.8725 -4.8255 2.2526 11 1 0.1930 -4.4616 3.0233 12 6 0.1479 -4.9463 0.9770 13 7 -0.4096 -5.0400 -0.0083 14 6 1.4193 -6.1952 2.6601 15 6 0.2719 -7.1310 2.9403 16 1 -0.7456 -6.7839 2.8377 17 6 0.5210 -8.4306 3.3279 18 7 1.7601 -8.8533 3.4534 19 14 -0.9012 -9.5909 3.6746 20 1 -1.2787 -10.2986 2.4248 21 1 -0.4918 -10.5830 4.7009 22 1 -2.0639 -8.8136 4.1737 23 1 -0.3634 0.1515 -1.0164 24 1 -0.3633 0.8046 0.6394 25 1 -0.3633 -0.9560 0.3771 26 1 2.4186 1.6803 -0.9585 27 1 1.3000 2.1097 0.4056 28 1 3.9571 0.5040 0.5592 29 1 3.2574 1.6305 1.8065 30 1 3.2246 -1.8266 0.8203 31 1 3.1814 -1.4868 2.5670 32 1 0.8609 -2.2090 2.5395 33 1 2.6640 -4.1582 1.2593 34 1 2.6214 -3.8189 3.0061 35 1 2.0281 -6.5987 1.8511 36 1 2.0300 -6.0904 3.5569 37 1 1.9354 -9.7676 3.7256 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905854251.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:50 Heat of formation + Delta-G solvation = 28.150070 kcal Electronic energy + Delta-G solvation = -16386.305935 eV Core-core repulsion = 13777.335496 eV Total energy + Delta-G solvation = -2608.970439 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.02938 -38.66685 -36.43630 -35.34206 -33.34570 -31.53688 -29.48246 -27.37216 -25.04872 -24.43170 -23.46498 -23.10851 -20.56849 -18.61723 -18.33722 -16.96029 -16.69077 -16.44897 -16.21050 -15.44176 -15.31528 -14.98073 -14.47319 -14.18240 -14.07181 -13.93782 -13.70647 -13.25518 -13.04128 -12.90981 -12.54025 -12.44433 -12.36856 -12.32612 -12.23802 -11.88028 -11.70968 -11.58760 -11.30512 -10.99729 -10.55611 -9.73089 -9.22500 -8.19323 -6.27636 1.40084 1.42478 1.51504 2.08864 2.16011 2.41758 3.06090 3.16165 3.26946 3.38414 3.64503 4.00967 4.19737 4.27941 4.32797 4.42815 4.46002 4.48144 4.55756 4.71561 4.80773 4.82503 4.84674 5.00479 5.02264 5.05055 5.07407 5.31562 5.47079 5.53336 5.62598 5.79534 6.07153 6.22258 6.23990 6.58951 6.83839 6.95199 7.40984 8.91713 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.048019 B = 0.004386 C = 0.004151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.959287 B = 6382.441118 C = 6743.496137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.003 4.003 2 N -0.491 5.491 3 C -0.007 4.007 4 C -0.130 4.130 5 C 0.031 3.969 6 H 0.085 0.915 7 C 0.079 3.921 8 N -0.699 5.699 9 C 0.081 3.919 10 C 0.021 3.979 11 H 0.120 0.880 12 C 0.265 3.735 13 N -0.516 5.516 14 C 0.037 3.963 15 C -0.539 4.539 16 H 0.054 0.946 17 C 0.011 3.989 18 N -0.924 5.924 19 Si 0.948 3.052 20 H -0.285 1.285 21 H -0.278 1.278 22 H -0.263 1.263 23 H 0.059 0.941 24 H 0.045 0.955 25 H 0.059 0.941 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.092 0.908 29 H 0.096 0.904 30 H 0.063 0.937 31 H 0.053 0.947 32 H 0.346 0.654 33 H 0.063 0.937 34 H 0.068 0.932 35 H -0.002 1.002 36 H 0.037 0.963 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.937 20.863 0.825 21.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 N -0.214 5.214 3 C -0.136 4.136 4 C -0.168 4.168 5 C -0.079 4.079 6 H 0.102 0.898 7 C -0.050 4.050 8 N -0.331 5.331 9 C -0.049 4.049 10 C -0.001 4.001 11 H 0.138 0.862 12 C -0.051 4.051 13 N -0.194 5.194 14 C -0.001 4.001 15 C -0.577 4.577 16 H 0.072 0.928 17 C -0.188 4.188 18 N -0.564 5.564 19 Si 0.774 3.226 20 H -0.211 1.211 21 H -0.203 1.203 22 H -0.187 1.187 23 H 0.078 0.922 24 H 0.063 0.937 25 H 0.078 0.922 26 H 0.101 0.899 27 H 0.096 0.904 28 H 0.110 0.890 29 H 0.114 0.886 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.164 0.836 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.017 0.983 36 H 0.055 0.945 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.270 19.983 -1.829 20.194 hybrid contribution -0.645 -0.543 1.744 1.937 sum 1.625 19.440 -0.086 19.508 Atomic orbital electron populations 1.22758 0.89618 1.01358 1.01453 1.68890 1.09598 1.19489 1.23416 1.23852 0.97688 0.91253 1.00822 1.23147 0.96967 0.97481 0.99172 1.23465 0.97458 0.95309 0.91684 0.89751 1.21882 0.92611 0.90122 1.00393 1.60375 1.18847 1.01646 1.52186 1.21827 0.94438 0.87421 1.01216 1.19185 0.95831 0.98307 0.86756 0.86235 1.29402 0.91829 0.89568 0.94280 1.80974 1.12167 1.12340 1.13912 1.18992 0.95600 0.89066 0.96483 1.21564 0.93556 0.96916 1.45697 0.92760 1.25719 0.97776 0.99883 0.95393 1.70033 1.20178 1.17738 1.48453 0.85693 0.80110 0.79007 0.77775 1.21122 1.20290 1.18739 0.92221 0.93677 0.92217 0.89902 0.90422 0.88994 0.88564 0.91866 0.92857 0.83559 0.91840 0.91392 0.98347 0.94509 0.92708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.06 9.67 127.69 1.23 1.18 16 2 N -0.49 -10.86 6.52 -928.43 -6.05 -16.91 16 3 C -0.01 -0.12 7.70 83.57 0.64 0.53 16 4 C -0.13 -1.77 8.01 30.94 0.25 -1.52 16 5 C 0.03 0.55 3.27 42.19 0.14 0.68 16 6 H 0.08 1.35 7.89 -2.39 -0.02 1.33 16 7 C 0.08 1.63 5.70 86.30 0.49 2.12 16 8 N -0.70 -17.27 6.20 -513.88 -3.19 -20.46 16 9 C 0.08 2.32 5.05 86.30 0.44 2.75 16 10 C 0.02 0.76 2.35 -12.60 -0.03 0.73 16 11 H 0.12 3.82 8.14 -2.39 -0.02 3.80 16 12 C 0.27 11.27 13.67 89.44 1.22 12.49 16 13 N -0.52 -24.18 18.54 20.01 0.37 -23.80 16 14 C 0.04 1.74 4.42 29.85 0.13 1.87 16 15 C -0.54 -28.78 8.60 25.60 0.22 -28.56 16 16 H 0.05 2.86 7.59 -2.91 -0.02 2.84 16 17 C 0.01 0.62 5.46 84.66 0.46 1.08 16 18 N -0.92 -53.42 13.29 21.45 0.28 -53.14 16 19 Si 0.95 43.65 29.54 68.60 2.03 45.68 16 20 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 21 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 22 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 23 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 24 H 0.04 0.80 7.55 -2.39 -0.02 0.78 16 25 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 26 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.08 1.01 7.58 -2.39 -0.02 1.00 16 28 H 0.09 1.31 8.12 -2.39 -0.02 1.29 16 29 H 0.10 0.91 8.14 -2.38 -0.02 0.89 16 30 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.35 7.37 8.73 -89.69 -0.78 6.58 16 33 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 36 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16 37 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 Total: -1.00 -65.32 314.62 -1.10 -66.43 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: 0.26 Total: 8.85 kcal Atomic # 6 Polarization: -11.85 SS G_CDS: 5.20 Total: -6.65 kcal Atomic # 7 Polarization: -105.73 SS G_CDS: -8.58 Total: -114.31 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -65.32 -1.10 -66.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905854251.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.576 kcal (2) G-P(sol) polarization free energy of solvation -65.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds