Wall clock time and date at job start Sun Mar 29 2020 21:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.47488 * 110.99989 * 2 1 4 4 C 1.53635 * 87.94845 * 221.34710 * 3 2 1 5 5 C 1.47480 * 111.00075 * 264.02686 * 2 1 3 6 6 H 1.08998 * 113.47769 * 23.88134 * 5 2 1 7 7 C 1.53001 * 113.47455 * 253.46590 * 5 2 1 8 8 N 1.46904 * 109.46572 * 75.44259 * 7 5 2 9 9 C 1.46900 * 110.99705 * 179.97438 * 8 7 5 10 10 C 1.52997 * 109.47171 * 179.97438 * 9 8 7 11 11 H 1.09000 * 109.47140 * 305.00052 * 10 9 8 12 12 C 1.47206 * 109.47080 * 64.99999 * 10 9 8 13 13 N 6.38335 * 72.16885 * 226.76544 * 2 1 3 14 14 C 1.53002 * 109.47415 * 185.00028 * 10 9 8 15 15 C 1.50699 * 109.47425 * 175.00239 * 14 10 9 16 16 H 1.08002 * 119.99621 * 359.97438 * 15 14 10 17 17 C 1.37872 * 120.00042 * 180.02562 * 15 14 10 18 18 N 1.31510 * 120.00120 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99904 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47498 * 89.99916 * 19 17 15 21 21 H 1.48505 * 109.46901 * 209.99992 * 19 17 15 22 22 H 1.48506 * 109.47173 * 329.99331 * 19 17 15 23 23 H 1.08996 * 109.47075 * 155.97318 * 1 2 3 24 24 H 1.08994 * 109.47174 * 275.97687 * 1 2 3 25 25 H 1.09001 * 109.47023 * 35.96898 * 1 2 3 26 26 H 1.08995 * 113.47462 * 336.06198 * 3 2 1 27 27 H 1.08998 * 113.47893 * 106.47101 * 3 2 1 28 28 H 1.08997 * 114.17096 * 272.34446 * 4 3 2 29 29 H 1.09007 * 114.20001 * 139.60971 * 4 3 2 30 30 H 1.08998 * 109.47420 * 315.44214 * 7 5 2 31 31 H 1.09003 * 109.46730 * 195.43568 * 7 5 2 32 32 H 1.00897 * 111.00229 * 56.04700 * 8 7 5 33 33 H 1.09001 * 109.47612 * 59.99529 * 9 8 7 34 34 H 1.08998 * 109.47323 * 299.99822 * 9 8 7 35 35 H 1.09006 * 109.46551 * 294.99831 * 14 10 9 36 36 H 1.09000 * 109.47059 * 54.99917 * 14 10 9 37 37 H 0.97003 * 120.00093 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9975 1.3769 0.0000 4 6 3.0539 0.9125 -1.0143 5 6 1.9975 -0.1433 -1.3694 6 1 1.2997 0.1830 -2.1405 7 6 2.5888 -1.5256 -1.6529 8 7 1.5006 -2.4950 -1.8376 9 6 2.0319 -3.8366 -2.1130 10 6 0.8716 -4.8165 -2.2985 11 1 0.2202 -4.7778 -1.4253 12 6 0.1047 -4.4472 -3.4995 13 7 -0.4857 -4.1625 -4.4272 14 6 1.4225 -6.2346 -2.4612 15 6 0.2789 -7.2141 -2.5208 16 1 -0.7391 -6.8606 -2.4493 17 6 0.5322 -8.5616 -2.6656 18 7 1.7719 -8.9921 -2.7521 19 14 -0.8854 -9.7757 -2.7402 20 1 -1.3084 -9.9568 -4.1521 21 1 -0.4489 -11.0812 -2.1829 22 1 -2.0260 -9.2545 -1.9447 23 1 -0.3633 -0.9386 -0.4184 24 1 -0.3633 0.1070 1.0220 25 1 -0.3633 0.8317 -0.6036 26 1 1.3001 2.1097 -0.4056 27 1 2.4178 1.6808 0.9587 28 1 3.9580 0.5048 -0.5621 29 1 3.2540 1.6292 -1.8109 30 1 3.2113 -1.8338 -0.8129 31 1 3.1948 -1.4829 -2.5579 32 1 0.8721 -2.1982 -2.5690 33 1 2.6509 -4.1611 -1.2765 34 1 2.6338 -3.8097 -3.0213 35 1 2.0017 -6.2957 -3.3826 36 1 2.0631 -6.4751 -1.6127 37 1 1.9501 -9.9401 -2.8543 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905854253.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:52 Heat of formation + Delta-G solvation = 50.160193 kcal Electronic energy + Delta-G solvation = -16353.760460 eV Core-core repulsion = 13745.744452 eV Total energy + Delta-G solvation = -2608.016008 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.26924 -37.31724 -35.05722 -33.53821 -31.70344 -30.69358 -28.19970 -25.85345 -24.26550 -23.08994 -22.24769 -21.66382 -19.80928 -16.73563 -16.57551 -16.15899 -15.84771 -15.34879 -14.76372 -14.28895 -14.08890 -13.53026 -13.26917 -13.10052 -12.79103 -12.52484 -12.09862 -11.85993 -11.67543 -11.54649 -11.50801 -11.19687 -11.01740 -10.95586 -10.79761 -10.65629 -10.43744 -10.22885 -9.52259 -9.21702 -8.96993 -8.44328 -8.25311 -6.08269 -4.11336 3.30822 3.37285 3.40846 3.57065 3.62316 3.84723 4.14750 4.36844 4.43979 4.74624 4.82179 5.04067 5.14042 5.17374 5.22100 5.29796 5.34073 5.45355 5.51875 5.56696 5.67018 5.76563 5.79454 5.94962 6.01712 6.20188 6.30734 6.38968 6.56911 6.97464 7.14844 7.44699 7.47970 7.54952 7.86820 8.24692 8.40273 8.93208 9.54073 11.02677 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.042337 B = 0.004306 C = 0.004240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.205160 B = 6500.418418 C = 6601.574136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.010 4.010 2 N -0.457 5.457 3 C -0.009 4.009 4 C -0.142 4.142 5 C 0.030 3.970 6 H 0.073 0.927 7 C 0.075 3.925 8 N -0.687 5.687 9 C 0.069 3.931 10 C 0.007 3.993 11 H 0.111 0.889 12 C 0.243 3.757 13 N -0.479 5.479 14 C 0.032 3.968 15 C -0.526 4.526 16 H 0.056 0.944 17 C 0.062 3.938 18 N -0.892 5.892 19 Si 0.891 3.109 20 H -0.281 1.281 21 H -0.285 1.285 22 H -0.272 1.272 23 H 0.082 0.918 24 H 0.066 0.934 25 H 0.027 0.973 26 H 0.064 0.936 27 H 0.083 0.917 28 H 0.095 0.905 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.033 0.967 32 H 0.333 0.667 33 H 0.092 0.908 34 H 0.033 0.967 35 H 0.024 0.976 36 H 0.040 0.960 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.222 18.367 5.230 19.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 N -0.179 5.179 3 C -0.138 4.138 4 C -0.180 4.180 5 C -0.080 4.080 6 H 0.091 0.909 7 C -0.054 4.054 8 N -0.318 5.318 9 C -0.061 4.061 10 C -0.015 4.015 11 H 0.128 0.872 12 C -0.074 4.074 13 N -0.156 5.156 14 C -0.006 4.006 15 C -0.564 4.564 16 H 0.075 0.925 17 C -0.140 4.140 18 N -0.531 5.531 19 Si 0.719 3.281 20 H -0.207 1.207 21 H -0.211 1.211 22 H -0.197 1.197 23 H 0.100 0.900 24 H 0.085 0.915 25 H 0.046 0.954 26 H 0.082 0.918 27 H 0.102 0.898 28 H 0.114 0.886 29 H 0.092 0.908 30 H 0.102 0.898 31 H 0.051 0.949 32 H 0.150 0.850 33 H 0.110 0.890 34 H 0.051 0.949 35 H 0.042 0.958 36 H 0.058 0.942 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.500 18.026 5.035 18.882 hybrid contribution -0.710 -0.290 -1.289 1.500 sum 1.790 17.736 3.746 18.215 Atomic orbital electron populations 1.22872 0.89288 1.01897 1.01803 1.68876 1.09637 1.17420 1.22005 1.23833 0.97380 0.92240 1.00311 1.23214 0.97791 0.98014 0.99005 1.23413 0.96705 0.95686 0.92176 0.90902 1.21893 0.93121 0.90127 1.00304 1.60549 1.18450 1.02292 1.50469 1.22066 0.96041 0.87345 1.00665 1.19341 0.94276 0.98259 0.89658 0.87156 1.29356 0.92792 0.90927 0.94311 1.81023 1.10730 1.11771 1.12125 1.19165 0.96850 0.85952 0.98671 1.21150 0.92780 0.91637 1.50867 0.92528 1.24947 0.95587 0.98487 0.94932 1.69937 1.18418 1.15026 1.49675 0.86595 0.82599 0.80576 0.78325 1.20712 1.21071 1.19710 0.89964 0.91472 0.95418 0.91765 0.89830 0.88649 0.90825 0.89788 0.94920 0.85034 0.88997 0.94870 0.95796 0.94157 0.92805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.10 9.69 60.06 0.58 0.48 16 2 N -0.46 -5.05 6.52 -244.57 -1.59 -6.64 16 3 C -0.01 -0.07 7.70 -7.47 -0.06 -0.13 16 4 C -0.14 -1.16 8.02 -26.13 -0.21 -1.37 16 5 C 0.03 0.31 3.26 -71.42 -0.23 0.07 16 6 H 0.07 0.75 7.91 -51.93 -0.41 0.34 16 7 C 0.08 0.86 5.70 -3.82 -0.02 0.84 16 8 N -0.69 -9.28 6.50 -113.78 -0.74 -10.01 16 9 C 0.07 1.04 5.12 -3.83 -0.02 1.02 16 10 C 0.01 0.12 2.42 -93.40 -0.23 -0.10 16 11 H 0.11 2.00 8.14 -51.93 -0.42 1.58 16 12 C 0.24 4.94 12.98 -20.76 -0.27 4.67 16 13 N -0.48 -10.48 18.54 42.15 0.78 -9.70 16 14 C 0.03 0.75 4.42 -27.88 -0.12 0.63 16 15 C -0.53 -14.15 8.60 -34.44 -0.30 -14.45 16 16 H 0.06 1.52 7.59 -52.49 -0.40 1.12 16 17 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 18 N -0.89 -25.72 13.29 55.43 0.74 -24.98 16 19 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 22 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 23 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 24 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.03 0.26 7.52 -51.93 -0.39 -0.13 16 26 H 0.06 0.50 7.54 -51.93 -0.39 0.11 16 27 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.09 0.76 8.12 -51.93 -0.42 0.34 16 29 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 30 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 31 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.33 4.62 7.81 -39.29 -0.31 4.31 16 33 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 37 H 0.26 7.18 8.31 -40.82 -0.34 6.85 16 LS Contribution 313.42 15.07 4.72 4.72 Total: -1.00 -29.62 313.42 -8.19 -37.82 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -6.10 Total: -0.95 kcal Atomic # 6 Polarization: -5.72 SS G_CDS: -0.97 Total: -6.69 kcal Atomic # 7 Polarization: -50.53 SS G_CDS: -0.82 Total: -51.34 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -29.62 -8.19 -37.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905854253.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.975 kcal (2) G-P(sol) polarization free energy of solvation -29.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds