Wall clock time and date at job start Sun Mar 29 2020 21:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.47488 * 110.99989 * 2 1 4 4 C 1.53635 * 87.94845 * 221.34710 * 3 2 1 5 5 C 1.47480 * 111.00075 * 264.02686 * 2 1 3 6 6 H 1.08998 * 113.47769 * 23.88134 * 5 2 1 7 7 C 1.53001 * 113.47455 * 253.46590 * 5 2 1 8 8 N 1.46904 * 109.46572 * 75.44259 * 7 5 2 9 9 C 1.46900 * 110.99705 * 179.97438 * 8 7 5 10 10 C 1.52997 * 109.47171 * 179.97438 * 9 8 7 11 11 H 1.09000 * 109.47140 * 305.00052 * 10 9 8 12 12 C 1.47206 * 109.47080 * 64.99999 * 10 9 8 13 13 N 6.38335 * 72.16885 * 226.76544 * 2 1 3 14 14 C 1.53002 * 109.47415 * 185.00028 * 10 9 8 15 15 C 1.50699 * 109.47425 * 175.00239 * 14 10 9 16 16 H 1.08002 * 119.99621 * 359.97438 * 15 14 10 17 17 C 1.37872 * 120.00042 * 180.02562 * 15 14 10 18 18 N 1.31510 * 120.00120 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99904 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47498 * 89.99916 * 19 17 15 21 21 H 1.48505 * 109.46901 * 209.99992 * 19 17 15 22 22 H 1.48506 * 109.47173 * 329.99331 * 19 17 15 23 23 H 1.08996 * 109.47075 * 155.97318 * 1 2 3 24 24 H 1.08994 * 109.47174 * 275.97687 * 1 2 3 25 25 H 1.09001 * 109.47023 * 35.96898 * 1 2 3 26 26 H 1.08995 * 113.47462 * 336.06198 * 3 2 1 27 27 H 1.08998 * 113.47893 * 106.47101 * 3 2 1 28 28 H 1.08997 * 114.17096 * 272.34446 * 4 3 2 29 29 H 1.09007 * 114.20001 * 139.60971 * 4 3 2 30 30 H 1.08998 * 109.47420 * 315.44214 * 7 5 2 31 31 H 1.09003 * 109.46730 * 195.43568 * 7 5 2 32 32 H 1.00897 * 111.00229 * 56.04700 * 8 7 5 33 33 H 1.09001 * 109.47612 * 59.99529 * 9 8 7 34 34 H 1.08998 * 109.47323 * 299.99822 * 9 8 7 35 35 H 1.09006 * 109.46551 * 294.99831 * 14 10 9 36 36 H 1.09000 * 109.47059 * 54.99917 * 14 10 9 37 37 H 0.97003 * 120.00093 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9975 1.3769 0.0000 4 6 3.0539 0.9125 -1.0143 5 6 1.9975 -0.1433 -1.3694 6 1 1.2997 0.1830 -2.1405 7 6 2.5888 -1.5256 -1.6529 8 7 1.5006 -2.4950 -1.8376 9 6 2.0319 -3.8366 -2.1130 10 6 0.8716 -4.8165 -2.2985 11 1 0.2202 -4.7778 -1.4253 12 6 0.1047 -4.4472 -3.4995 13 7 -0.4857 -4.1625 -4.4272 14 6 1.4225 -6.2346 -2.4612 15 6 0.2789 -7.2141 -2.5208 16 1 -0.7391 -6.8606 -2.4493 17 6 0.5322 -8.5616 -2.6656 18 7 1.7719 -8.9921 -2.7521 19 14 -0.8854 -9.7757 -2.7402 20 1 -1.3084 -9.9568 -4.1521 21 1 -0.4489 -11.0812 -2.1829 22 1 -2.0260 -9.2545 -1.9447 23 1 -0.3633 -0.9386 -0.4184 24 1 -0.3633 0.1070 1.0220 25 1 -0.3633 0.8317 -0.6036 26 1 1.3001 2.1097 -0.4056 27 1 2.4178 1.6808 0.9587 28 1 3.9580 0.5048 -0.5621 29 1 3.2540 1.6292 -1.8109 30 1 3.2113 -1.8338 -0.8129 31 1 3.1948 -1.4829 -2.5579 32 1 0.8721 -2.1982 -2.5690 33 1 2.6509 -4.1611 -1.2765 34 1 2.6338 -3.8097 -3.0213 35 1 2.0017 -6.2957 -3.3826 36 1 2.0631 -6.4751 -1.6127 37 1 1.9501 -9.9401 -2.8543 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905854253.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:52 Heat of formation + Delta-G solvation = 28.815167 kcal Electronic energy + Delta-G solvation = -16354.686050 eV Core-core repulsion = 13745.744452 eV Total energy + Delta-G solvation = -2608.941598 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.02436 -38.80329 -36.45347 -35.39073 -33.38386 -31.52047 -29.49874 -27.37391 -25.02270 -24.44068 -23.57695 -23.08091 -20.55721 -18.53444 -18.25791 -17.04836 -16.89276 -16.62094 -16.17848 -15.52622 -15.19242 -14.76531 -14.68123 -14.20166 -14.11328 -13.94738 -13.79944 -13.40168 -13.07818 -12.77400 -12.55036 -12.46252 -12.42895 -12.31912 -12.17320 -11.98790 -11.70048 -11.57920 -11.33144 -11.00956 -10.55888 -9.74233 -9.32862 -8.19756 -6.28186 1.39996 1.41726 1.51394 1.92607 1.94755 2.41315 3.04074 3.15259 3.24469 3.25792 3.63244 3.97699 4.16216 4.27478 4.30376 4.43220 4.45223 4.48803 4.57855 4.70931 4.71608 4.84535 4.94962 4.99429 5.00776 5.02941 5.11569 5.31347 5.46787 5.52514 5.62091 5.78970 6.03188 6.20959 6.23062 6.37108 6.73800 6.86619 7.40440 8.91268 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.042337 B = 0.004306 C = 0.004240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.205160 B = 6500.418418 C = 6601.574136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.007 4.007 2 N -0.481 5.481 3 C -0.007 4.007 4 C -0.131 4.131 5 C 0.027 3.973 6 H 0.073 0.927 7 C 0.076 3.924 8 N -0.688 5.688 9 C 0.081 3.919 10 C 0.020 3.980 11 H 0.120 0.880 12 C 0.253 3.747 13 N -0.505 5.505 14 C 0.038 3.962 15 C -0.540 4.540 16 H 0.053 0.947 17 C 0.012 3.988 18 N -0.924 5.924 19 Si 0.949 3.051 20 H -0.283 1.283 21 H -0.278 1.278 22 H -0.265 1.265 23 H 0.064 0.936 24 H 0.068 0.932 25 H 0.037 0.963 26 H 0.074 0.926 27 H 0.089 0.911 28 H 0.097 0.903 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.041 0.959 32 H 0.330 0.670 33 H 0.101 0.899 34 H 0.033 0.967 35 H 0.001 0.999 36 H 0.035 0.965 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.157 19.488 5.714 20.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 N -0.203 5.203 3 C -0.135 4.135 4 C -0.169 4.169 5 C -0.083 4.083 6 H 0.091 0.909 7 C -0.053 4.053 8 N -0.319 5.319 9 C -0.050 4.050 10 C -0.002 4.002 11 H 0.137 0.863 12 C -0.063 4.063 13 N -0.182 5.182 14 C -0.001 4.001 15 C -0.578 4.578 16 H 0.072 0.928 17 C -0.187 4.187 18 N -0.563 5.563 19 Si 0.774 3.226 20 H -0.209 1.209 21 H -0.203 1.203 22 H -0.189 1.189 23 H 0.083 0.917 24 H 0.087 0.913 25 H 0.056 0.944 26 H 0.092 0.908 27 H 0.107 0.893 28 H 0.116 0.884 29 H 0.109 0.891 30 H 0.099 0.901 31 H 0.059 0.941 32 H 0.147 0.853 33 H 0.120 0.880 34 H 0.051 0.949 35 H 0.019 0.981 36 H 0.054 0.946 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.434 19.165 5.528 20.094 hybrid contribution -0.678 -0.610 -1.427 1.694 sum 1.755 18.555 4.101 19.083 Atomic orbital electron populations 1.22814 0.89445 1.01338 1.01969 1.68873 1.09696 1.19278 1.22483 1.23876 0.97504 0.91261 1.00895 1.23195 0.97219 0.97310 0.99173 1.23438 0.97540 0.95381 0.91917 0.90949 1.21944 0.92559 0.90276 1.00513 1.60531 1.19193 1.01919 1.50214 1.21892 0.94382 0.87582 1.01113 1.19213 0.95271 0.96565 0.89166 0.86269 1.29641 0.92238 0.90245 0.94212 1.81023 1.11686 1.12643 1.12865 1.18988 0.95654 0.88217 0.97204 1.21559 0.93589 0.92568 1.50117 0.92827 1.25712 0.97769 1.00364 0.94885 1.70030 1.20081 1.15452 1.50782 0.85691 0.80028 0.78749 0.78110 1.20928 1.20294 1.18887 0.91704 0.91285 0.94437 0.90813 0.89282 0.88399 0.89140 0.90086 0.94096 0.85264 0.88048 0.94864 0.98074 0.94630 0.92680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.13 9.69 127.69 1.24 1.11 16 2 N -0.48 -9.84 6.52 -927.69 -6.05 -15.89 16 3 C -0.01 -0.10 7.70 83.62 0.64 0.54 16 4 C -0.13 -1.80 8.02 30.98 0.25 -1.55 16 5 C 0.03 0.50 3.26 42.20 0.14 0.64 16 6 H 0.07 1.36 7.91 -2.39 -0.02 1.34 16 7 C 0.08 1.62 5.70 86.30 0.49 2.11 16 8 N -0.69 -17.69 6.50 -513.88 -3.34 -21.03 16 9 C 0.08 2.34 5.12 86.30 0.44 2.78 16 10 C 0.02 0.72 2.42 -12.60 -0.03 0.69 16 11 H 0.12 4.19 8.14 -2.39 -0.02 4.18 16 12 C 0.25 10.15 12.98 89.44 1.16 11.31 16 13 N -0.50 -21.83 18.54 20.01 0.37 -21.46 16 14 C 0.04 1.79 4.42 29.85 0.13 1.92 16 15 C -0.54 -28.99 8.60 25.60 0.22 -28.77 16 16 H 0.05 2.85 7.59 -2.91 -0.02 2.83 16 17 C 0.01 0.64 5.46 84.65 0.46 1.11 16 18 N -0.92 -53.48 13.29 21.44 0.28 -53.19 16 19 Si 0.95 43.78 29.54 68.60 2.03 45.80 16 20 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 21 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 22 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 23 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 24 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.04 0.65 7.52 -2.39 -0.02 0.63 16 26 H 0.07 0.96 7.54 -2.39 -0.02 0.95 16 27 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.10 1.32 8.12 -2.39 -0.02 1.30 16 29 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 30 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.33 8.80 7.81 -89.70 -0.70 8.10 16 33 H 0.10 2.78 8.14 -2.39 -0.02 2.76 16 34 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.00 0.04 8.14 -2.38 -0.02 0.02 16 36 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 Total: -1.00 -61.84 313.42 -1.22 -63.06 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: 0.34 Total: 10.82 kcal Atomic # 6 Polarization: -13.27 SS G_CDS: 5.15 Total: -8.12 kcal Atomic # 7 Polarization: -102.83 SS G_CDS: -8.73 Total: -111.56 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal Total: -61.84 -1.22 -63.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905854253.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.878 kcal (2) G-P(sol) polarization free energy of solvation -61.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds