Wall clock time and date at job start Sun Mar 29 2020 21:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.47961 * 111.00068 * 2 1 4 4 C 1.53935 * 86.18094 * 137.58163 * 3 2 1 5 5 C 1.47959 * 111.00187 * 99.35867 * 2 1 3 6 6 H 1.09005 * 113.86004 * 336.75382 * 5 2 1 7 7 C 1.53005 * 113.75744 * 108.09944 * 5 2 1 8 8 N 1.46897 * 109.47038 * 281.56116 * 7 5 2 9 9 C 1.46903 * 110.99868 * 179.97438 * 8 7 5 10 10 C 1.52994 * 109.47401 * 179.97438 * 9 8 7 11 11 H 1.09006 * 109.47184 * 55.00558 * 10 9 8 12 12 C 1.47197 * 109.47371 * 295.00478 * 10 9 8 13 13 N 6.43810 * 74.23710 * 135.50932 * 2 1 3 14 14 C 1.53002 * 109.47323 * 175.00020 * 10 9 8 15 15 C 1.50706 * 109.46931 * 184.99880 * 14 10 9 16 16 H 1.07999 * 120.00193 * 0.02562 * 15 14 10 17 17 C 1.37879 * 119.99398 * 180.02562 * 15 14 10 18 18 N 1.31514 * 120.00338 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99424 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.46845 * 180.02562 * 19 17 15 21 21 H 1.48503 * 109.47399 * 299.99813 * 19 17 15 22 22 H 1.48498 * 109.47295 * 60.00420 * 19 17 15 23 23 H 1.08999 * 109.47327 * 320.63720 * 1 2 3 24 24 H 1.09001 * 109.47589 * 80.64035 * 1 2 3 25 25 H 1.09005 * 109.47444 * 200.63616 * 1 2 3 26 26 H 1.08998 * 113.75849 * 23.26328 * 3 2 1 27 27 H 1.09000 * 113.76189 * 251.90405 * 3 2 1 28 28 H 1.08995 * 113.73494 * 221.92195 * 4 3 2 29 29 H 1.09003 * 113.72733 * 90.64006 * 4 3 2 30 30 H 1.09004 * 109.46878 * 161.56173 * 7 5 2 31 31 H 1.09003 * 109.47203 * 41.56437 * 7 5 2 32 32 H 1.00904 * 111.00198 * 56.05031 * 8 7 5 33 33 H 1.09005 * 109.46809 * 60.00043 * 9 8 7 34 34 H 1.08997 * 109.47633 * 300.00766 * 9 8 7 35 35 H 1.09000 * 109.46986 * 65.00438 * 14 10 9 36 36 H 1.08992 * 109.46974 * 305.00502 * 14 10 9 37 37 H 0.97000 * 119.99706 * 359.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9992 1.3813 0.0000 4 6 3.0210 0.8792 1.0360 5 6 1.9992 -0.2246 1.3629 6 1 1.3021 0.0433 2.1570 7 6 2.6263 -1.6062 1.5604 8 7 1.5643 -2.6037 1.7476 9 6 2.1304 -3.9456 1.9400 10 6 0.9967 -4.9548 2.1318 11 1 0.3070 -4.8908 1.2901 12 6 0.2770 -4.6530 3.3799 13 7 -0.2800 -4.4200 4.3421 14 6 1.5789 -6.3677 2.2075 15 6 0.4561 -7.3708 2.2730 16 1 -0.5701 -7.0343 2.2613 17 6 0.7390 -8.7182 2.3478 18 7 1.9886 -9.1279 2.3626 19 14 -0.6527 -9.9616 2.4282 20 1 -0.0876 -11.3328 2.5031 21 1 -1.4802 -9.7012 3.6336 22 1 -1.4967 -9.8392 1.2125 23 1 -0.3634 0.7945 0.6518 24 1 -0.3634 0.1671 -1.0140 25 1 -0.3634 -0.9617 0.3622 26 1 1.3010 2.1198 0.3940 27 1 2.4459 1.6803 -0.9483 28 1 3.1920 1.5758 1.8568 29 1 3.9450 0.5052 0.5951 30 1 3.2695 -1.5908 2.4403 31 1 3.2179 -1.8656 0.6824 32 1 0.9170 -2.5924 0.9736 33 1 2.7705 -3.9467 2.8223 34 1 2.7183 -4.2210 1.0645 35 1 2.1989 -6.4578 3.0994 36 1 2.1856 -6.5585 1.3224 37 1 2.7112 -8.4822 2.3205 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905854255.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:56 Heat of formation + Delta-G solvation = 43.259876 kcal Electronic energy + Delta-G solvation = -16363.991786 eV Core-core repulsion = 13755.676558 eV Total energy + Delta-G solvation = -2608.315229 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.17573 -37.29433 -35.08271 -33.76360 -31.68752 -30.74831 -28.14598 -25.57240 -24.29854 -23.12959 -22.27249 -21.97103 -19.72003 -17.41241 -16.75769 -16.24343 -15.66676 -15.28006 -14.69619 -14.22483 -13.98744 -13.72932 -13.34313 -13.30343 -12.77141 -12.48770 -12.16701 -12.08216 -11.71369 -11.59475 -11.55884 -11.33470 -11.01306 -10.91064 -10.83070 -10.61106 -10.33492 -10.14402 -9.86105 -9.04786 -8.65252 -8.40556 -8.32501 -6.42241 -4.13205 3.43628 3.46558 3.63836 3.64613 3.68577 3.77364 4.09864 4.34847 4.52012 4.68507 4.83293 4.95621 5.05319 5.13278 5.16943 5.26449 5.36430 5.40166 5.42560 5.51598 5.61581 5.69747 5.74353 5.78352 5.95866 5.97796 6.17476 6.28801 6.36094 6.80887 7.07040 7.11357 7.25661 7.47198 8.04730 8.36263 8.53960 8.80363 9.57947 10.98604 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.042291 B = 0.004290 C = 0.004231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.924721 B = 6524.952557 C = 6616.151377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.011 4.011 2 N -0.483 5.483 3 C 0.000 4.000 4 C -0.142 4.142 5 C 0.033 3.967 6 H 0.086 0.914 7 C 0.078 3.922 8 N -0.693 5.693 9 C 0.066 3.934 10 C 0.017 3.983 11 H 0.099 0.901 12 C 0.255 3.745 13 N -0.477 5.477 14 C 0.018 3.982 15 C -0.606 4.606 16 H 0.051 0.949 17 C 0.021 3.979 18 N -0.909 5.909 19 Si 1.066 2.934 20 H -0.282 1.282 21 H -0.288 1.288 22 H -0.286 1.286 23 H 0.033 0.967 24 H 0.068 0.932 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.087 0.913 28 H 0.072 0.928 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.041 0.959 32 H 0.342 0.658 33 H 0.075 0.925 34 H 0.049 0.951 35 H 0.017 0.983 36 H 0.028 0.972 37 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.287 18.996 -6.172 20.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 N -0.206 5.206 3 C -0.129 4.129 4 C -0.180 4.180 5 C -0.077 4.077 6 H 0.104 0.896 7 C -0.051 4.051 8 N -0.325 5.325 9 C -0.064 4.064 10 C -0.005 4.005 11 H 0.117 0.883 12 C -0.062 4.062 13 N -0.154 5.154 14 C -0.021 4.021 15 C -0.644 4.644 16 H 0.069 0.931 17 C -0.184 4.184 18 N -0.545 5.545 19 Si 0.894 3.106 20 H -0.207 1.207 21 H -0.214 1.214 22 H -0.213 1.213 23 H 0.051 0.949 24 H 0.087 0.913 25 H 0.092 0.908 26 H 0.086 0.914 27 H 0.105 0.895 28 H 0.090 0.910 29 H 0.110 0.890 30 H 0.094 0.906 31 H 0.059 0.941 32 H 0.160 0.840 33 H 0.094 0.906 34 H 0.067 0.933 35 H 0.035 0.965 36 H 0.046 0.954 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.198 17.387 -4.484 17.996 hybrid contribution 0.339 1.879 -0.755 2.053 sum 1.537 19.266 -5.239 20.025 Atomic orbital electron populations 1.22879 0.89478 1.01952 1.01706 1.68488 1.09302 1.18163 1.24622 1.23869 0.97394 0.91444 1.00200 1.23375 0.98315 0.97529 0.98800 1.23560 0.96889 0.95654 0.91586 0.89638 1.21801 0.93305 0.89709 1.00312 1.60559 1.17911 1.05355 1.48633 1.22066 0.96098 0.86850 1.01403 1.19037 0.94913 0.97654 0.88924 0.88292 1.28788 0.92640 0.90488 0.94240 1.80978 1.10497 1.11673 1.12207 1.19281 0.97167 0.88090 0.97522 1.21973 0.93036 0.93169 1.56247 0.93113 1.25791 1.01096 0.98037 0.93465 1.70805 0.99181 1.38334 1.46130 0.83578 0.74387 0.75974 0.76670 1.20680 1.21448 1.21267 0.94879 0.91346 0.90763 0.91410 0.89466 0.90951 0.89021 0.90572 0.94111 0.84024 0.90604 0.93319 0.96481 0.95380 0.92056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.11 9.65 60.06 0.58 0.47 16 2 N -0.48 -4.93 6.36 -238.96 -1.52 -6.44 16 3 C 0.00 0.00 7.97 -2.77 -0.02 -0.02 16 4 C -0.14 -1.14 7.85 -25.80 -0.20 -1.34 16 5 C 0.03 0.33 3.50 -66.66 -0.23 0.10 16 6 H 0.09 0.93 7.93 -51.93 -0.41 0.52 16 7 C 0.08 0.89 5.72 -3.82 -0.02 0.87 16 8 N -0.69 -9.38 6.20 -113.78 -0.71 -10.08 16 9 C 0.07 1.00 5.05 -3.83 -0.02 0.98 16 10 C 0.02 0.32 2.35 -93.41 -0.22 0.10 16 11 H 0.10 1.76 8.14 -51.93 -0.42 1.34 16 12 C 0.26 5.48 13.67 -20.76 -0.28 5.19 16 13 N -0.48 -11.07 18.54 42.15 0.78 -10.28 16 14 C 0.02 0.42 3.74 -27.88 -0.10 0.32 16 15 C -0.61 -16.52 8.60 -34.44 -0.30 -16.81 16 16 H 0.05 1.39 7.59 -52.49 -0.40 0.99 16 17 C 0.02 0.58 5.46 -17.82 -0.10 0.48 16 18 N -0.91 -26.95 13.65 55.43 0.76 -26.19 16 19 Si 1.07 25.18 29.90 -169.99 -5.08 20.10 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.29 -6.40 7.11 56.52 0.40 -5.99 16 23 H 0.03 0.29 7.62 -51.93 -0.40 -0.10 16 24 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.07 0.77 7.24 -51.93 -0.38 0.39 16 26 H 0.07 0.50 7.62 -51.93 -0.40 0.10 16 27 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.09 0.72 8.10 -51.93 -0.42 0.30 16 30 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.34 4.47 7.83 -39.29 -0.31 4.16 16 33 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.02 0.42 8.01 -51.93 -0.42 0.01 16 36 H 0.03 0.65 8.01 -51.93 -0.42 0.24 16 37 H 0.27 7.82 7.22 -40.82 -0.29 7.52 16 LS Contribution 311.82 15.07 4.70 4.70 Total: -1.00 -30.93 311.82 -8.00 -38.93 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -6.01 Total: -1.05 kcal Atomic # 6 Polarization: -8.75 SS G_CDS: -0.92 Total: -9.67 kcal Atomic # 7 Polarization: -52.32 SS G_CDS: -0.69 Total: -53.01 kcal Atomic # 14 Polarization: 25.18 SS G_CDS: -5.08 Total: 20.10 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.93 -8.00 -38.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905854255.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.193 kcal (2) G-P(sol) polarization free energy of solvation -30.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds