Wall clock time and date at job start Sun Mar 29 2020 21:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.47961 * 111.00068 * 2 1 4 4 C 1.53935 * 86.18094 * 137.58163 * 3 2 1 5 5 C 1.47959 * 111.00187 * 99.35867 * 2 1 3 6 6 H 1.09005 * 113.86004 * 336.75382 * 5 2 1 7 7 C 1.53005 * 113.75744 * 108.09944 * 5 2 1 8 8 N 1.46897 * 109.47038 * 281.56116 * 7 5 2 9 9 C 1.46903 * 110.99868 * 179.97438 * 8 7 5 10 10 C 1.52994 * 109.47401 * 179.97438 * 9 8 7 11 11 H 1.09006 * 109.47184 * 55.00558 * 10 9 8 12 12 C 1.47197 * 109.47371 * 295.00478 * 10 9 8 13 13 N 6.43810 * 74.23710 * 135.50932 * 2 1 3 14 14 C 1.53002 * 109.47323 * 175.00020 * 10 9 8 15 15 C 1.50706 * 109.46931 * 184.99880 * 14 10 9 16 16 H 1.07999 * 120.00193 * 0.02562 * 15 14 10 17 17 C 1.37879 * 119.99398 * 180.02562 * 15 14 10 18 18 N 1.31514 * 120.00338 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99424 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.46845 * 180.02562 * 19 17 15 21 21 H 1.48503 * 109.47399 * 299.99813 * 19 17 15 22 22 H 1.48498 * 109.47295 * 60.00420 * 19 17 15 23 23 H 1.08999 * 109.47327 * 320.63720 * 1 2 3 24 24 H 1.09001 * 109.47589 * 80.64035 * 1 2 3 25 25 H 1.09005 * 109.47444 * 200.63616 * 1 2 3 26 26 H 1.08998 * 113.75849 * 23.26328 * 3 2 1 27 27 H 1.09000 * 113.76189 * 251.90405 * 3 2 1 28 28 H 1.08995 * 113.73494 * 221.92195 * 4 3 2 29 29 H 1.09003 * 113.72733 * 90.64006 * 4 3 2 30 30 H 1.09004 * 109.46878 * 161.56173 * 7 5 2 31 31 H 1.09003 * 109.47203 * 41.56437 * 7 5 2 32 32 H 1.00904 * 111.00198 * 56.05031 * 8 7 5 33 33 H 1.09005 * 109.46809 * 60.00043 * 9 8 7 34 34 H 1.08997 * 109.47633 * 300.00766 * 9 8 7 35 35 H 1.09000 * 109.46986 * 65.00438 * 14 10 9 36 36 H 1.08992 * 109.46974 * 305.00502 * 14 10 9 37 37 H 0.97000 * 119.99706 * 359.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9992 1.3813 0.0000 4 6 3.0210 0.8792 1.0360 5 6 1.9992 -0.2246 1.3629 6 1 1.3021 0.0433 2.1570 7 6 2.6263 -1.6062 1.5604 8 7 1.5643 -2.6037 1.7476 9 6 2.1304 -3.9456 1.9400 10 6 0.9967 -4.9548 2.1318 11 1 0.3070 -4.8908 1.2901 12 6 0.2770 -4.6530 3.3799 13 7 -0.2800 -4.4200 4.3421 14 6 1.5789 -6.3677 2.2075 15 6 0.4561 -7.3708 2.2730 16 1 -0.5701 -7.0343 2.2613 17 6 0.7390 -8.7182 2.3478 18 7 1.9886 -9.1279 2.3626 19 14 -0.6527 -9.9616 2.4282 20 1 -0.0876 -11.3328 2.5031 21 1 -1.4802 -9.7012 3.6336 22 1 -1.4967 -9.8392 1.2125 23 1 -0.3634 0.7945 0.6518 24 1 -0.3634 0.1671 -1.0140 25 1 -0.3634 -0.9617 0.3622 26 1 1.3010 2.1198 0.3940 27 1 2.4459 1.6803 -0.9483 28 1 3.1920 1.5758 1.8568 29 1 3.9450 0.5052 0.5951 30 1 3.2695 -1.5908 2.4403 31 1 3.2179 -1.8656 0.6824 32 1 0.9170 -2.5924 0.9736 33 1 2.7705 -3.9467 2.8223 34 1 2.7183 -4.2210 1.0645 35 1 2.1989 -6.4578 3.0994 36 1 2.1856 -6.5585 1.3224 37 1 2.7112 -8.4822 2.3205 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905854255.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:56 Heat of formation + Delta-G solvation = 21.040029 kcal Electronic energy + Delta-G solvation = -16364.955311 eV Core-core repulsion = 13755.676558 eV Total energy + Delta-G solvation = -2609.278753 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.90854 -38.80846 -36.51932 -35.67010 -33.31841 -31.53992 -29.35690 -27.14757 -25.00524 -24.57441 -23.70363 -23.29601 -20.45245 -19.14692 -18.49180 -17.17390 -16.58278 -16.20817 -15.84083 -15.60901 -15.43244 -15.31858 -14.95015 -14.08969 -14.01099 -13.91791 -13.61817 -13.53027 -13.29392 -13.02761 -12.58149 -12.50395 -12.34257 -12.23652 -12.02889 -11.94612 -11.78839 -11.61070 -11.40863 -10.66907 -10.52932 -9.77527 -9.39383 -8.64135 -6.35180 1.53980 1.60454 1.79562 1.96574 2.03430 2.56518 2.91630 3.11340 3.18749 3.26362 3.64482 3.96648 4.04466 4.20172 4.23256 4.29662 4.40930 4.45577 4.54711 4.62304 4.69102 4.77401 4.80238 4.86222 4.90152 4.98983 5.01200 5.19606 5.28796 5.37649 5.44232 5.89315 6.01363 6.12041 6.20466 6.43404 6.62014 6.80771 7.42696 8.78028 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.042291 B = 0.004290 C = 0.004231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.924721 B = 6524.952557 C = 6616.151377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.010 4.010 2 N -0.499 5.499 3 C 0.002 3.998 4 C -0.133 4.133 5 C 0.030 3.970 6 H 0.076 0.924 7 C 0.081 3.919 8 N -0.699 5.699 9 C 0.078 3.922 10 C 0.027 3.973 11 H 0.115 0.885 12 C 0.264 3.736 13 N -0.510 5.510 14 C 0.021 3.979 15 C -0.617 4.617 16 H 0.046 0.954 17 C -0.030 4.030 18 N -0.935 5.935 19 Si 1.106 2.894 20 H -0.282 1.282 21 H -0.283 1.283 22 H -0.264 1.264 23 H 0.037 0.963 24 H 0.074 0.926 25 H 0.062 0.938 26 H 0.076 0.924 27 H 0.095 0.905 28 H 0.085 0.915 29 H 0.095 0.905 30 H 0.078 0.922 31 H 0.043 0.957 32 H 0.345 0.655 33 H 0.072 0.928 34 H 0.064 0.936 35 H -0.002 1.002 36 H 0.031 0.969 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.120 20.142 -7.025 21.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 N -0.222 5.222 3 C -0.127 4.127 4 C -0.171 4.171 5 C -0.080 4.080 6 H 0.094 0.906 7 C -0.048 4.048 8 N -0.331 5.331 9 C -0.052 4.052 10 C 0.005 3.995 11 H 0.133 0.867 12 C -0.052 4.052 13 N -0.187 5.187 14 C -0.018 4.018 15 C -0.655 4.655 16 H 0.064 0.936 17 C -0.228 4.228 18 N -0.573 5.573 19 Si 0.929 3.071 20 H -0.208 1.208 21 H -0.209 1.209 22 H -0.189 1.189 23 H 0.056 0.944 24 H 0.092 0.908 25 H 0.081 0.919 26 H 0.095 0.905 27 H 0.113 0.887 28 H 0.104 0.896 29 H 0.113 0.887 30 H 0.096 0.904 31 H 0.061 0.939 32 H 0.163 0.837 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.016 0.984 36 H 0.049 0.951 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.033 18.566 -5.350 19.349 hybrid contribution 0.399 1.571 -0.498 1.696 sum 1.432 20.137 -5.848 21.018 Atomic orbital electron populations 1.22859 0.89435 1.01490 1.02109 1.68490 1.09508 1.19727 1.24465 1.23933 0.97374 0.90623 1.00732 1.23348 0.97895 0.96734 0.99117 1.23507 0.97575 0.95440 0.91441 0.90582 1.21837 0.92790 0.89743 1.00456 1.60522 1.18731 1.04743 1.49117 1.21867 0.94438 0.86925 1.01964 1.19015 0.96032 0.96225 0.88253 0.86746 1.29280 0.91956 0.89611 0.94331 1.80975 1.11735 1.12764 1.13229 1.19152 0.95987 0.90016 0.96600 1.22380 0.93858 0.94108 1.55111 0.93600 1.27077 1.02297 1.00509 0.92965 1.70911 0.99748 1.38282 1.48314 0.83057 0.72404 0.73979 0.77709 1.20757 1.20908 1.18896 0.94428 0.90765 0.91885 0.90545 0.88682 0.89649 0.88674 0.90363 0.93918 0.83673 0.90933 0.91813 0.98401 0.95061 0.92917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.18 9.65 127.69 1.23 1.06 16 2 N -0.50 -9.29 6.36 -909.93 -5.79 -15.07 16 3 C 0.00 0.02 7.97 86.41 0.69 0.71 16 4 C -0.13 -1.83 7.85 31.24 0.25 -1.58 16 5 C 0.03 0.56 3.50 45.02 0.16 0.71 16 6 H 0.08 1.56 7.93 -2.38 -0.02 1.55 16 7 C 0.08 1.71 5.72 86.31 0.49 2.20 16 8 N -0.70 -17.86 6.20 -513.88 -3.19 -21.05 16 9 C 0.08 2.26 5.05 86.30 0.44 2.69 16 10 C 0.03 0.98 2.35 -12.60 -0.03 0.95 16 11 H 0.11 3.88 8.14 -2.38 -0.02 3.86 16 12 C 0.26 11.18 13.67 89.44 1.22 12.40 16 13 N -0.51 -23.48 18.54 20.00 0.37 -23.11 16 14 C 0.02 0.98 3.74 29.85 0.11 1.10 16 15 C -0.62 -33.37 8.60 25.60 0.22 -33.15 16 16 H 0.05 2.48 7.59 -2.91 -0.02 2.46 16 17 C -0.03 -1.67 5.46 84.66 0.46 -1.20 16 18 N -0.94 -55.71 13.65 21.45 0.29 -55.42 16 19 Si 1.11 50.08 29.90 68.60 2.05 52.13 16 20 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 21 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 22 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 23 H 0.04 0.62 7.62 -2.39 -0.02 0.60 16 24 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.06 1.25 7.24 -2.38 -0.02 1.23 16 26 H 0.08 0.94 7.62 -2.39 -0.02 0.92 16 27 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.09 1.26 8.10 -2.39 -0.02 1.24 16 30 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.34 8.49 7.83 -89.69 -0.70 7.78 16 33 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 34 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.00 -0.12 8.01 -2.39 -0.02 -0.14 16 36 H 0.03 1.44 8.01 -2.39 -0.02 1.42 16 37 H 0.26 15.39 7.22 -92.71 -0.67 14.72 16 Total: -1.00 -64.90 311.82 -0.58 -65.48 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: 0.44 Total: 11.16 kcal Atomic # 6 Polarization: -19.36 SS G_CDS: 5.24 Total: -14.12 kcal Atomic # 7 Polarization: -106.34 SS G_CDS: -8.31 Total: -114.65 kcal Atomic # 14 Polarization: 50.08 SS G_CDS: 2.05 Total: 52.13 kcal Total: -64.90 -0.58 -65.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905854255.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.516 kcal (2) G-P(sol) polarization free energy of solvation -64.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds