Wall clock time and date at job start Sun Mar 29 2020 22:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53782 * 113.61479 * 2 1 4 4 C 1.53778 * 87.08003 * 219.93598 * 3 2 1 5 5 C 1.52996 * 113.61666 * 139.97863 * 4 3 2 6 6 N 1.46503 * 109.47470 * 176.52544 * 5 4 3 7 7 C 1.36938 * 119.99529 * 90.00319 * 6 5 4 8 8 H 1.08006 * 119.99815 * 217.31851 * 7 6 5 9 9 C 1.38812 * 120.00389 * 37.04263 * 7 6 5 10 10 N 1.31620 * 119.99340 * 21.37803 * 9 7 6 11 11 Si 1.86800 * 120.00276 * 201.38223 * 9 7 6 12 12 H 1.48494 * 109.47346 * 89.99819 * 11 9 7 13 13 H 1.48504 * 109.46891 * 210.00156 * 11 9 7 14 14 H 1.48496 * 109.46772 * 329.99584 * 11 9 7 15 15 C 1.46494 * 120.00270 * 270.00833 * 6 5 4 16 16 C 1.54267 * 110.02791 * 241.36852 * 15 6 5 17 17 C 1.54967 * 104.16121 * 217.13465 * 16 15 6 18 18 C 1.54893 * 102.77527 * 37.88922 * 17 16 15 19 19 C 1.53877 * 110.03519 * 124.15529 * 15 6 5 20 20 C 1.53788 * 87.17305 * 25.38826 * 4 3 2 21 21 H 1.08998 * 109.47576 * 59.99737 * 1 2 3 22 22 H 1.08997 * 109.47313 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.46874 * 300.00261 * 1 2 3 24 24 H 1.08999 * 112.85056 * 131.19675 * 2 1 3 25 25 H 1.08998 * 113.61287 * 105.39048 * 3 2 1 26 26 H 1.08996 * 113.61404 * 334.48397 * 3 2 1 27 27 H 1.09002 * 113.61459 * 270.80125 * 4 3 2 28 28 H 1.08999 * 109.46858 * 56.53180 * 5 4 3 29 29 H 1.08995 * 109.47304 * 296.53149 * 5 4 3 30 30 H 0.97002 * 119.99608 * 174.94296 * 10 9 7 31 31 H 1.08997 * 110.02078 * 2.75739 * 15 6 5 32 32 H 1.08999 * 110.49257 * 335.78264 * 16 15 6 33 33 H 1.09006 * 110.48494 * 98.43127 * 16 15 6 34 34 H 1.08999 * 110.72011 * 279.57589 * 17 16 15 35 35 H 1.08994 * 110.92572 * 156.29842 * 17 16 15 36 36 H 1.09003 * 110.48580 * 203.40252 * 18 17 16 37 37 H 1.09002 * 110.48525 * 80.76136 * 18 17 16 38 38 H 1.09004 * 110.03030 * 238.56789 * 19 15 6 39 39 H 1.08994 * 110.03028 * 359.97438 * 19 15 6 40 40 H 1.08998 * 113.61021 * 89.15729 * 20 4 3 41 41 H 1.08993 * 113.61391 * 220.05796 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1460 1.4090 0.0000 4 6 3.1936 0.8655 -0.9859 5 6 3.5488 1.8463 -2.1051 6 7 4.6085 1.2731 -2.9387 7 6 4.2848 0.5058 -4.0258 8 1 4.8853 -0.3562 -4.2764 9 6 3.1816 0.8326 -4.8023 10 7 2.7013 2.0579 -4.7806 11 14 2.3786 -0.4664 -5.8780 12 1 1.3177 -1.1618 -5.1059 13 1 1.7781 0.1814 -7.0717 14 1 3.4017 -1.4515 -6.3115 15 6 6.0143 1.5206 -2.6093 16 6 6.7046 2.2694 -3.7680 17 6 8.1302 1.6638 -3.8148 18 6 7.8771 0.1674 -3.5052 19 6 6.7596 0.1848 -2.4419 20 6 2.1498 -0.1864 -1.3968 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.9533 -0.6616 0.7558 25 1 2.5638 1.7029 0.9629 26 1 1.4951 2.1701 -0.4302 27 1 4.0724 0.4419 -0.4996 28 1 3.8958 2.7836 -1.6703 29 1 2.6667 2.0342 -2.7171 30 1 1.9776 2.3058 -5.3770 31 1 6.0853 2.1053 -1.6921 32 1 6.1813 2.0857 -4.7064 33 1 6.7500 3.3381 -3.5582 34 1 8.7656 2.1139 -3.0521 35 1 8.5721 1.7843 -4.8039 36 1 8.7781 -0.2970 -3.1043 37 1 7.5432 -0.3563 -4.4010 38 1 7.1930 0.1216 -1.4437 39 1 6.0752 -0.6476 -2.6054 40 1 1.4999 0.1378 -2.2096 41 1 2.5706 -1.1785 -1.5600 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929684747.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:11 Heat of formation + Delta-G solvation = 16.237963 kcal Electronic energy + Delta-G solvation = -18075.470624 eV Core-core repulsion = 15569.523981 eV Total energy + Delta-G solvation = -2505.946643 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -38.60013 -37.38695 -34.00525 -31.06321 -29.57911 -27.78978 -26.71343 -25.73637 -24.84318 -22.62752 -20.03597 -19.83406 -18.99667 -18.59089 -16.18708 -15.31006 -14.96878 -14.62416 -14.11062 -13.50173 -13.27949 -13.13588 -12.87251 -12.50057 -12.36023 -11.71614 -11.48949 -11.29504 -10.97045 -10.82524 -10.74095 -10.41603 -10.34997 -10.24489 -10.19370 -9.99586 -9.93553 -9.83530 -9.65639 -9.48999 -9.21417 -9.10655 -8.35370 -6.37460 -5.69651 -3.22245 3.39188 3.47128 3.48484 4.53628 5.14557 5.29611 5.33878 5.37551 5.50066 5.52125 5.55804 5.70557 5.89170 5.95418 6.05205 6.13516 6.18437 6.25669 6.32966 6.38302 6.38873 6.50478 6.54456 6.57337 6.62600 6.67384 6.67838 6.75298 6.89946 6.92633 7.01893 7.04832 7.19225 7.27390 7.34846 7.46298 7.86235 7.96850 8.65842 9.32063 9.95920 10.54291 11.32339 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.018123 B = 0.010244 C = 0.007599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.618035 B = 2732.540690 C = 3684.009123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.125 4.125 3 C -0.133 4.133 4 C -0.118 4.118 5 C 0.155 3.845 6 N -0.577 5.577 7 C -0.240 4.240 8 H 0.058 0.942 9 C 0.014 3.986 10 N -0.892 5.892 11 Si 0.886 3.114 12 H -0.286 1.286 13 H -0.293 1.293 14 H -0.279 1.279 15 C 0.171 3.829 16 C -0.131 4.131 17 C -0.124 4.124 18 C -0.117 4.117 19 C -0.133 4.133 20 C -0.109 4.109 21 H 0.055 0.945 22 H 0.047 0.953 23 H 0.047 0.953 24 H 0.076 0.924 25 H 0.051 0.949 26 H 0.075 0.925 27 H 0.068 0.932 28 H 0.018 0.982 29 H 0.098 0.902 30 H 0.253 0.747 31 H 0.045 0.955 32 H 0.083 0.917 33 H 0.043 0.957 34 H 0.051 0.949 35 H 0.051 0.949 36 H 0.046 0.954 37 H 0.061 0.939 38 H 0.041 0.959 39 H 0.071 0.929 40 H 0.078 0.922 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.295 -1.798 6.826 7.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.143 4.143 3 C -0.171 4.171 4 C -0.139 4.139 5 C 0.029 3.971 6 N -0.296 5.296 7 C -0.370 4.370 8 H 0.076 0.924 9 C -0.185 4.185 10 N -0.536 5.536 11 Si 0.717 3.283 12 H -0.213 1.213 13 H -0.220 1.220 14 H -0.205 1.205 15 C 0.063 3.937 16 C -0.170 4.170 17 C -0.162 4.162 18 C -0.155 4.155 19 C -0.172 4.172 20 C -0.146 4.146 21 H 0.074 0.926 22 H 0.066 0.934 23 H 0.066 0.934 24 H 0.094 0.906 25 H 0.069 0.931 26 H 0.094 0.906 27 H 0.087 0.913 28 H 0.036 0.964 29 H 0.116 0.884 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.102 0.898 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.064 0.936 37 H 0.080 0.920 38 H 0.060 0.940 39 H 0.090 0.910 40 H 0.097 0.903 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.103 -1.729 6.768 7.295 hybrid contribution -0.438 -0.704 -0.601 1.024 sum 1.665 -2.433 6.167 6.836 Atomic orbital electron populations 1.21705 0.95889 1.00801 1.01192 1.22579 0.94613 0.97926 0.99191 1.22979 0.99153 0.96057 0.98948 1.23087 0.95306 0.98343 0.97142 1.20991 0.95232 0.90904 0.89995 1.43930 0.98371 1.58917 1.28375 1.18851 1.10117 1.04161 1.03840 0.92427 1.25086 1.00930 0.95162 0.97362 1.69892 1.28774 1.16119 1.38804 0.86541 0.79890 0.81937 0.79951 1.21322 1.21998 1.20459 1.21019 0.85890 0.92302 0.94495 1.22830 0.93868 0.97784 1.02512 1.22446 0.97968 0.96138 0.99635 1.22245 0.97514 0.96366 0.99357 1.22578 0.97094 1.01141 0.96436 1.22841 0.97952 0.99144 0.94680 0.92630 0.93435 0.93411 0.90565 0.93060 0.90592 0.91347 0.96373 0.88434 0.93691 0.93638 0.89806 0.93832 0.92987 0.92989 0.93553 0.92034 0.94001 0.91001 0.90293 0.92843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.71 37.16 0.36 -1.63 16 2 C -0.12 -2.01 4.35 -89.72 -0.39 -2.40 16 3 C -0.13 -2.24 7.21 -25.92 -0.19 -2.43 16 4 C -0.12 -2.32 3.96 -89.81 -0.36 -2.67 16 5 C 0.15 3.55 5.08 -4.04 -0.02 3.53 16 6 N -0.58 -13.70 2.39 -164.40 -0.39 -14.10 16 7 C -0.24 -6.21 7.76 -15.06 -0.12 -6.33 16 8 H 0.06 1.53 6.99 -52.48 -0.37 1.17 16 9 C 0.01 0.37 4.96 -17.43 -0.09 0.29 16 10 N -0.89 -24.99 11.43 55.49 0.63 -24.36 16 11 Si 0.89 21.39 29.61 -169.99 -5.03 16.35 16 12 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 13 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 14 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 15 C 0.17 3.57 3.41 -66.81 -0.23 3.34 16 16 C -0.13 -2.65 6.42 -25.03 -0.16 -2.81 16 17 C -0.12 -2.09 6.91 -24.69 -0.17 -2.26 16 18 C -0.12 -2.00 6.83 -25.07 -0.17 -2.17 16 19 C -0.13 -2.51 6.15 -25.61 -0.16 -2.66 16 20 C -0.11 -2.12 7.20 -25.83 -0.19 -2.31 16 21 H 0.05 0.84 7.96 -51.93 -0.41 0.43 16 22 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 25 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.08 1.31 8.06 -51.93 -0.42 0.89 16 27 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 28 H 0.02 0.41 7.96 -51.93 -0.41 -0.01 16 29 H 0.10 2.53 5.21 -51.93 -0.27 2.26 16 30 H 0.25 6.94 8.32 -40.82 -0.34 6.60 16 31 H 0.05 0.92 7.85 -51.93 -0.41 0.51 16 32 H 0.08 1.99 7.18 -51.93 -0.37 1.62 16 33 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.07 1.49 6.78 -51.93 -0.35 1.14 16 40 H 0.08 1.72 7.75 -51.93 -0.40 1.32 16 41 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 316.45 15.07 4.77 4.77 Total: -1.00 -26.47 316.45 -9.52 -35.99 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -7.63 Total: 1.86 kcal Atomic # 6 Polarization: -18.65 SS G_CDS: -1.87 Total: -20.52 kcal Atomic # 7 Polarization: -38.69 SS G_CDS: 0.24 Total: -38.45 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.03 Total: 16.35 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -26.47 -9.52 -35.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929684747.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.229 kcal (2) G-P(sol) polarization free energy of solvation -26.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds