Wall clock time and date at job start Sun Mar 29 2020 22:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53782 * 113.61479 * 2 1 4 4 C 1.53778 * 87.08003 * 219.93598 * 3 2 1 5 5 C 1.52996 * 113.61666 * 139.97863 * 4 3 2 6 6 N 1.46503 * 109.47470 * 176.52544 * 5 4 3 7 7 C 1.36938 * 119.99529 * 90.00319 * 6 5 4 8 8 H 1.08006 * 119.99815 * 217.31851 * 7 6 5 9 9 C 1.38812 * 120.00389 * 37.04263 * 7 6 5 10 10 N 1.31620 * 119.99340 * 21.37803 * 9 7 6 11 11 Si 1.86800 * 120.00276 * 201.38223 * 9 7 6 12 12 H 1.48494 * 109.47346 * 89.99819 * 11 9 7 13 13 H 1.48504 * 109.46891 * 210.00156 * 11 9 7 14 14 H 1.48496 * 109.46772 * 329.99584 * 11 9 7 15 15 C 1.46494 * 120.00270 * 270.00833 * 6 5 4 16 16 C 1.54267 * 110.02791 * 241.36852 * 15 6 5 17 17 C 1.54967 * 104.16121 * 217.13465 * 16 15 6 18 18 C 1.54893 * 102.77527 * 37.88922 * 17 16 15 19 19 C 1.53877 * 110.03519 * 124.15529 * 15 6 5 20 20 C 1.53788 * 87.17305 * 25.38826 * 4 3 2 21 21 H 1.08998 * 109.47576 * 59.99737 * 1 2 3 22 22 H 1.08997 * 109.47313 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.46874 * 300.00261 * 1 2 3 24 24 H 1.08999 * 112.85056 * 131.19675 * 2 1 3 25 25 H 1.08998 * 113.61287 * 105.39048 * 3 2 1 26 26 H 1.08996 * 113.61404 * 334.48397 * 3 2 1 27 27 H 1.09002 * 113.61459 * 270.80125 * 4 3 2 28 28 H 1.08999 * 109.46858 * 56.53180 * 5 4 3 29 29 H 1.08995 * 109.47304 * 296.53149 * 5 4 3 30 30 H 0.97002 * 119.99608 * 174.94296 * 10 9 7 31 31 H 1.08997 * 110.02078 * 2.75739 * 15 6 5 32 32 H 1.08999 * 110.49257 * 335.78264 * 16 15 6 33 33 H 1.09006 * 110.48494 * 98.43127 * 16 15 6 34 34 H 1.08999 * 110.72011 * 279.57589 * 17 16 15 35 35 H 1.08994 * 110.92572 * 156.29842 * 17 16 15 36 36 H 1.09003 * 110.48580 * 203.40252 * 18 17 16 37 37 H 1.09002 * 110.48525 * 80.76136 * 18 17 16 38 38 H 1.09004 * 110.03030 * 238.56789 * 19 15 6 39 39 H 1.08994 * 110.03028 * 359.97438 * 19 15 6 40 40 H 1.08998 * 113.61021 * 89.15729 * 20 4 3 41 41 H 1.08993 * 113.61391 * 220.05796 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1460 1.4090 0.0000 4 6 3.1936 0.8655 -0.9859 5 6 3.5488 1.8463 -2.1051 6 7 4.6085 1.2731 -2.9387 7 6 4.2848 0.5058 -4.0258 8 1 4.8853 -0.3562 -4.2764 9 6 3.1816 0.8326 -4.8023 10 7 2.7013 2.0579 -4.7806 11 14 2.3786 -0.4664 -5.8780 12 1 1.3177 -1.1618 -5.1059 13 1 1.7781 0.1814 -7.0717 14 1 3.4017 -1.4515 -6.3115 15 6 6.0143 1.5206 -2.6093 16 6 6.7046 2.2694 -3.7680 17 6 8.1302 1.6638 -3.8148 18 6 7.8771 0.1674 -3.5052 19 6 6.7596 0.1848 -2.4419 20 6 2.1498 -0.1864 -1.3968 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.9533 -0.6616 0.7558 25 1 2.5638 1.7029 0.9629 26 1 1.4951 2.1701 -0.4302 27 1 4.0724 0.4419 -0.4996 28 1 3.8958 2.7836 -1.6703 29 1 2.6667 2.0342 -2.7171 30 1 1.9776 2.3058 -5.3770 31 1 6.0853 2.1053 -1.6921 32 1 6.1813 2.0857 -4.7064 33 1 6.7500 3.3381 -3.5582 34 1 8.7656 2.1139 -3.0521 35 1 8.5721 1.7843 -4.8039 36 1 8.7781 -0.2970 -3.1043 37 1 7.5432 -0.3563 -4.4010 38 1 7.1930 0.1216 -1.4437 39 1 6.0752 -0.6476 -2.6054 40 1 1.4999 0.1378 -2.2096 41 1 2.5706 -1.1785 -1.5600 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929684747.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:10 Heat of formation + Delta-G solvation = 5.018567 kcal Electronic energy + Delta-G solvation = -18075.957134 eV Core-core repulsion = 15569.523981 eV Total energy + Delta-G solvation = -2506.433153 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.14354 -38.95085 -35.78672 -32.98601 -31.00671 -29.32525 -28.29373 -27.57361 -26.33550 -24.38907 -21.59251 -21.28847 -20.73277 -20.08638 -18.07841 -17.07202 -16.51998 -16.21485 -15.92923 -15.11369 -14.84959 -14.68653 -14.24567 -14.02641 -13.89704 -13.25173 -13.13380 -12.94003 -12.81845 -12.72905 -12.27082 -12.10701 -11.96279 -11.78664 -11.71935 -11.70081 -11.45741 -11.32226 -11.31878 -11.11843 -10.80392 -10.70509 -10.35609 -8.34471 -7.72972 -5.28119 1.42161 1.46454 1.51518 2.53796 3.32781 3.62646 3.83467 3.96729 4.02087 4.03930 4.06766 4.23393 4.39120 4.62056 4.71389 4.72252 4.79690 4.91379 4.94041 4.96695 4.97250 5.01227 5.03629 5.07371 5.08482 5.20497 5.21842 5.26658 5.32342 5.33872 5.40798 5.56792 5.64820 5.69343 5.73374 5.73444 5.87129 6.04360 6.61066 7.30415 8.03109 8.54451 9.25150 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.018123 B = 0.010244 C = 0.007599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.618035 B = 2732.540690 C = 3684.009123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.107 4.107 3 C -0.123 4.123 4 C -0.117 4.117 5 C 0.157 3.843 6 N -0.589 5.589 7 C -0.227 4.227 8 H 0.049 0.951 9 C -0.030 4.030 10 N -0.921 5.921 11 Si 0.933 3.067 12 H -0.287 1.287 13 H -0.298 1.298 14 H -0.273 1.273 15 C 0.161 3.839 16 C -0.130 4.130 17 C -0.112 4.112 18 C -0.113 4.113 19 C -0.126 4.126 20 C -0.116 4.116 21 H 0.038 0.962 22 H 0.059 0.941 23 H 0.070 0.930 24 H 0.097 0.903 25 H 0.075 0.925 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.014 0.986 29 H 0.065 0.935 30 H 0.247 0.753 31 H 0.054 0.946 32 H 0.041 0.959 33 H 0.044 0.956 34 H 0.078 0.922 35 H 0.062 0.938 36 H 0.078 0.922 37 H 0.044 0.956 38 H 0.066 0.934 39 H 0.047 0.953 40 H 0.047 0.953 41 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.439 -2.583 8.724 9.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.126 4.126 3 C -0.161 4.161 4 C -0.137 4.137 5 C 0.031 3.969 6 N -0.309 5.309 7 C -0.358 4.358 8 H 0.066 0.934 9 C -0.226 4.226 10 N -0.567 5.567 11 Si 0.764 3.236 12 H -0.215 1.215 13 H -0.225 1.225 14 H -0.198 1.198 15 C 0.054 3.946 16 C -0.169 4.169 17 C -0.150 4.150 18 C -0.151 4.151 19 C -0.165 4.165 20 C -0.153 4.153 21 H 0.057 0.943 22 H 0.078 0.922 23 H 0.089 0.911 24 H 0.115 0.885 25 H 0.094 0.906 26 H 0.086 0.914 27 H 0.090 0.910 28 H 0.033 0.967 29 H 0.083 0.917 30 H 0.056 0.944 31 H 0.072 0.928 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.097 0.903 35 H 0.081 0.919 36 H 0.097 0.903 37 H 0.063 0.937 38 H 0.085 0.915 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 3.266 -2.527 8.677 9.610 hybrid contribution -0.735 -0.428 -1.175 1.450 sum 2.531 -2.956 7.502 8.451 Atomic orbital electron populations 1.21683 0.94446 1.01756 1.01513 1.22514 0.95830 0.97401 0.96812 1.22903 0.97813 0.96415 0.99004 1.22957 0.96056 0.97840 0.96870 1.20881 0.93833 0.91799 0.90404 1.44113 0.99883 1.58773 1.28136 1.18875 1.09472 1.03676 1.03764 0.93357 1.25560 1.01812 0.96315 0.98936 1.70015 1.29339 1.17510 1.39833 0.85782 0.79094 0.80260 0.78514 1.21458 1.22514 1.19821 1.21260 0.84543 0.93875 0.94925 1.22725 0.96065 0.98132 1.00022 1.22397 0.95759 0.95568 1.01266 1.22228 0.98060 0.96626 0.98192 1.22464 0.97022 0.98545 0.98480 1.22773 0.98052 0.98335 0.96175 0.94256 0.92218 0.91137 0.88474 0.90587 0.91405 0.90992 0.96715 0.91685 0.94382 0.92814 0.94057 0.93765 0.90321 0.91924 0.90296 0.93722 0.91534 0.93465 0.93449 0.93771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.64 9.71 71.98 0.70 -2.94 16 2 C -0.11 -3.23 4.35 -10.21 -0.04 -3.28 16 3 C -0.12 -3.94 7.21 31.12 0.22 -3.71 16 4 C -0.12 -4.53 3.96 -10.27 -0.04 -4.57 16 5 C 0.16 7.35 5.08 86.38 0.44 7.78 16 6 N -0.59 -28.54 2.39 -674.03 -1.61 -30.14 16 7 C -0.23 -12.09 7.76 84.03 0.65 -11.44 16 8 H 0.05 2.64 6.99 -2.91 -0.02 2.62 16 9 C -0.03 -1.65 4.96 84.86 0.42 -1.23 16 10 N -0.92 -53.75 11.43 21.65 0.25 -53.50 16 11 Si 0.93 45.21 29.61 68.60 2.03 47.24 16 12 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 13 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 14 H -0.27 -12.82 7.11 99.48 0.71 -12.12 16 15 C 0.16 6.63 3.41 45.72 0.16 6.79 16 16 C -0.13 -5.25 6.42 31.70 0.20 -5.04 16 17 C -0.11 -3.50 6.91 31.91 0.22 -3.28 16 18 C -0.11 -3.60 6.83 31.67 0.22 -3.38 16 19 C -0.13 -4.53 6.15 31.32 0.19 -4.34 16 20 C -0.12 -4.53 7.20 31.18 0.22 -4.31 16 21 H 0.04 1.16 7.96 -2.39 -0.02 1.14 16 22 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 23 H 0.07 1.57 8.14 -2.39 -0.02 1.56 16 24 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 25 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 26 H 0.07 2.28 8.06 -2.39 -0.02 2.26 16 27 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 28 H 0.01 0.67 7.96 -2.39 -0.02 0.65 16 29 H 0.07 3.53 5.21 -2.39 -0.01 3.52 16 30 H 0.25 14.15 8.32 -92.71 -0.77 13.37 16 31 H 0.05 2.11 7.85 -2.39 -0.02 2.09 16 32 H 0.04 2.01 7.18 -2.39 -0.02 1.99 16 33 H 0.04 1.73 8.14 -2.38 -0.02 1.71 16 34 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.05 1.93 6.78 -2.39 -0.02 1.91 16 40 H 0.05 2.14 7.75 -2.39 -0.02 2.12 16 41 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -58.74 316.45 5.19 -53.55 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: 0.96 Total: 15.80 kcal Atomic # 6 Polarization: -36.50 SS G_CDS: 3.56 Total: -32.94 kcal Atomic # 7 Polarization: -82.29 SS G_CDS: -1.36 Total: -83.65 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -58.74 5.19 -53.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929684747.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.570 kcal (2) G-P(sol) polarization free energy of solvation -58.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds