Wall clock time and date at job start Sun Mar 29 2020 22:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47078 * 2 1 4 4 H 1.09001 * 115.56553 * 29.29183 * 3 2 1 5 5 C 1.52998 * 117.49805 * 243.60995 * 3 2 1 6 6 C 1.53000 * 60.03371 * 252.51540 * 5 3 2 7 7 H 1.09004 * 117.49949 * 107.47035 * 6 5 3 8 8 C 1.52990 * 117.50284 * 252.47700 * 6 5 3 9 9 N 1.46905 * 109.47217 * 238.55975 * 8 6 5 10 10 C 1.46906 * 110.99431 * 75.54995 * 9 8 6 11 11 C 1.50703 * 109.46390 * 190.00159 * 10 9 8 12 12 H 1.08001 * 120.00707 * 359.97438 * 11 10 9 13 13 C 1.37886 * 119.99621 * 180.02562 * 11 10 9 14 14 N 1.31508 * 119.99966 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99660 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47104 * 90.00072 * 15 13 11 17 17 H 1.48505 * 109.46748 * 209.99833 * 15 13 11 18 18 H 1.48497 * 109.47491 * 329.99676 * 15 13 11 19 19 C 1.46895 * 111.00302 * 199.50336 * 9 8 6 20 20 C 1.52999 * 109.47086 * 75.61579 * 19 9 8 21 21 C 1.53000 * 117.50084 * 243.44539 * 20 19 9 22 22 C 1.52996 * 60.00161 * 252.51424 * 21 20 19 23 23 H 1.09002 * 109.46495 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47278 * 299.99849 * 1 2 3 25 25 H 1.08998 * 109.46932 * 60.00673 * 1 2 3 26 26 H 1.09001 * 109.47766 * 240.00182 * 2 1 3 27 27 H 1.09001 * 109.47438 * 119.99329 * 2 1 3 28 28 H 1.09004 * 117.50462 * 145.01910 * 5 3 2 29 29 H 1.08996 * 117.50028 * 0.02562 * 5 3 2 30 30 H 1.09000 * 109.47058 * 358.55921 * 8 6 5 31 31 H 1.08994 * 109.47747 * 118.56098 * 8 6 5 32 32 H 1.08992 * 109.47363 * 309.99865 * 10 9 8 33 33 H 1.08993 * 109.47093 * 70.00698 * 10 9 8 34 34 H 0.97003 * 119.99760 * 180.02562 * 14 13 11 35 35 H 1.09000 * 109.47358 * 195.62183 * 19 9 8 36 36 H 1.09008 * 109.47046 * 315.62014 * 19 9 8 37 37 H 1.09002 * 115.54662 * 29.16156 * 20 19 9 38 38 H 1.08998 * 117.49827 * 0.02562 * 21 20 19 39 39 H 1.09005 * 117.49543 * 145.02084 * 21 20 19 40 40 H 1.09004 * 117.49742 * 252.51417 * 22 21 20 41 41 H 1.08998 * 117.50086 * 107.48947 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3882 2.1719 0.4811 5 6 2.8442 1.9075 -1.2157 6 6 3.5509 1.6580 0.1182 7 1 4.1809 0.7719 0.1960 8 6 4.0317 2.8805 0.9024 9 7 5.4830 2.7889 1.1107 10 6 6.2131 3.1091 -0.1232 11 6 7.6708 2.7700 0.0535 12 1 8.0201 2.3584 0.9889 13 6 8.5590 2.9865 -0.9788 14 7 8.1338 3.4882 -2.1176 15 14 10.3660 2.5669 -0.7595 16 1 10.6028 1.1628 -1.1807 17 1 11.1904 3.4792 -1.5922 18 1 10.7413 2.7254 0.6685 19 6 5.9120 3.6558 2.2163 20 6 5.5263 3.0111 3.5491 21 6 4.5199 3.7553 4.4289 22 6 5.9953 3.7032 4.8305 23 1 -0.3632 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5137 0.8900 28 1 2.7216 2.9426 -1.5344 29 1 3.0095 1.1859 -2.0157 30 1 3.8017 3.7859 0.3408 31 1 3.5275 2.9141 1.8681 32 1 5.8026 2.5285 -0.9493 33 1 6.1111 4.1723 -0.3402 34 1 8.7586 3.6401 -2.8440 35 1 6.9932 3.7880 2.1759 36 1 5.4237 4.6264 2.1274 37 1 5.4878 1.9217 3.5506 38 1 4.1321 4.7041 4.0580 39 1 3.8188 3.1556 5.0094 40 1 6.2649 3.0692 5.6752 41 1 6.5785 4.6179 4.7240 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929775633.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:29 Heat of formation + Delta-G solvation = 33.256703 kcal Electronic energy + Delta-G solvation = -17027.047600 eV Core-core repulsion = 14521.838944 eV Total energy + Delta-G solvation = -2505.208655 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.35344 -37.21470 -35.10678 -32.52637 -31.79219 -27.55830 -27.03792 -24.02103 -23.55777 -22.10622 -21.17652 -20.33001 -19.77433 -19.51494 -16.41707 -15.39705 -15.12428 -14.64866 -14.45486 -14.12564 -13.99897 -13.33489 -13.20592 -12.78843 -12.25694 -11.94035 -11.82059 -11.68253 -11.40873 -11.25129 -11.10221 -10.90626 -10.89285 -10.69129 -10.59634 -10.48459 -10.08611 -9.72530 -9.54935 -9.42273 -9.24113 -8.98011 -8.39039 -7.19442 -5.98753 -3.99530 3.34287 3.40188 3.43896 4.13719 4.18372 4.45645 4.71640 4.98544 5.17374 5.21233 5.29353 5.30645 5.36929 5.37936 5.47795 5.54716 5.76073 5.85212 5.91313 5.92890 6.01050 6.05394 6.12368 6.14175 6.23349 6.26068 6.26632 6.31595 6.36327 6.40782 6.57847 6.58548 6.86004 6.87224 7.41175 7.41555 7.86255 8.17343 8.29056 8.62022 9.08984 9.64406 11.12058 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.015610 B = 0.007166 C = 0.005247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.283802 B = 3906.322748 C = 5335.071201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.092 4.092 3 C -0.159 4.159 4 H 0.096 0.904 5 C -0.176 4.176 6 C -0.122 4.122 7 H 0.111 0.889 8 C 0.087 3.913 9 N -0.532 5.532 10 C 0.194 3.806 11 C -0.507 4.507 12 H 0.063 0.937 13 C 0.055 3.945 14 N -0.899 5.899 15 Si 0.895 3.105 16 H -0.281 1.281 17 H -0.288 1.288 18 H -0.274 1.274 19 C 0.091 3.909 20 C -0.130 4.130 21 C -0.192 4.192 22 C -0.185 4.185 23 H 0.050 0.950 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.023 0.977 31 H 0.064 0.936 32 H 0.035 0.965 33 H -0.013 1.013 34 H 0.260 0.740 35 H 0.090 0.910 36 H 0.019 0.981 37 H 0.108 0.892 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.264 -2.530 7.453 13.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.129 4.129 3 C -0.178 4.178 4 H 0.115 0.885 5 C -0.213 4.213 6 C -0.141 4.141 7 H 0.129 0.871 8 C -0.042 4.042 9 N -0.256 5.256 10 C 0.069 3.931 11 C -0.545 4.545 12 H 0.081 0.919 13 C -0.146 4.146 14 N -0.538 5.538 15 Si 0.723 3.277 16 H -0.207 1.207 17 H -0.214 1.214 18 H -0.199 1.199 19 C -0.038 4.038 20 C -0.149 4.149 21 C -0.229 4.229 22 C -0.222 4.222 23 H 0.069 0.931 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.106 0.894 29 H 0.107 0.893 30 H 0.041 0.959 31 H 0.082 0.918 32 H 0.054 0.946 33 H 0.005 0.995 34 H 0.070 0.930 35 H 0.108 0.892 36 H 0.037 0.963 37 H 0.126 0.874 38 H 0.105 0.895 39 H 0.104 0.896 40 H 0.107 0.893 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -11.079 -2.948 7.386 13.638 hybrid contribution 0.803 0.705 -0.299 1.110 sum -10.277 -2.243 7.088 12.684 Atomic orbital electron populations 1.21740 0.96030 1.01065 1.01629 1.21082 0.95301 0.94706 1.01839 1.22466 0.94526 0.97331 1.03478 0.88547 1.23149 1.04535 1.01785 0.91853 1.22401 0.92551 1.00902 0.98226 0.87130 1.21585 0.90592 0.94108 0.97876 1.62001 1.02244 1.53356 1.08034 1.19734 0.93116 0.94302 0.85965 1.21207 0.92265 1.41369 0.99681 0.91854 1.24979 0.98925 0.95446 0.95222 1.69964 1.34912 1.45055 1.03901 0.86542 0.84910 0.78186 0.78043 1.20676 1.21402 1.19856 1.21575 1.01663 0.92120 0.88413 1.22462 1.01714 0.99378 0.91327 1.23010 0.92378 1.02393 1.05116 1.22895 0.97022 1.03082 0.99232 0.93117 0.92929 0.92828 0.92042 0.91834 0.89404 0.89267 0.95869 0.91803 0.94648 0.99525 0.93026 0.89176 0.96284 0.87362 0.89477 0.89567 0.89343 0.89139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.87 37.16 0.37 -1.12 16 2 C -0.09 -1.11 6.22 -26.73 -0.17 -1.27 16 3 C -0.16 -2.22 5.46 -90.58 -0.49 -2.71 16 4 H 0.10 1.28 8.07 -51.93 -0.42 0.86 16 5 C -0.18 -2.80 9.82 -26.73 -0.26 -3.06 16 6 C -0.12 -2.10 4.91 -90.58 -0.44 -2.54 16 7 H 0.11 2.08 8.14 -51.93 -0.42 1.65 16 8 C 0.09 1.60 5.09 -3.83 -0.02 1.59 16 9 N -0.53 -11.47 4.36 -236.08 -1.03 -12.50 16 10 C 0.19 5.06 4.55 -4.97 -0.02 5.04 16 11 C -0.51 -14.23 8.24 -34.44 -0.28 -14.52 16 12 H 0.06 1.77 7.31 -52.49 -0.38 1.38 16 13 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 14 N -0.90 -26.85 13.29 55.43 0.74 -26.12 16 15 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 16 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 17 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 18 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 19 C 0.09 1.78 5.07 -3.83 -0.02 1.76 16 20 C -0.13 -2.11 5.15 -90.62 -0.47 -2.58 16 21 C -0.19 -2.61 10.10 -26.73 -0.27 -2.88 16 22 C -0.18 -2.56 10.25 -26.73 -0.27 -2.83 16 23 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.75 7.87 -51.93 -0.41 0.34 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.09 1.41 8.03 -51.93 -0.42 0.99 16 29 H 0.09 1.38 8.03 -51.93 -0.42 0.96 16 30 H 0.02 0.45 7.73 -51.93 -0.40 0.05 16 31 H 0.06 1.08 7.23 -51.93 -0.38 0.70 16 32 H 0.04 0.99 7.43 -51.93 -0.39 0.60 16 33 H -0.01 -0.37 8.12 -51.93 -0.42 -0.79 16 34 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 35 H 0.09 1.97 6.58 -51.93 -0.34 1.63 16 36 H 0.02 0.37 7.73 -51.92 -0.40 -0.03 16 37 H 0.11 1.83 8.14 -51.93 -0.42 1.41 16 38 H 0.09 1.17 8.03 -51.93 -0.42 0.75 16 39 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 41 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 332.45 15.07 5.01 5.01 Total: -1.00 -28.85 332.45 -10.49 -39.34 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -7.73 Total: 1.18 kcal Atomic # 6 Polarization: -21.19 SS G_CDS: -2.45 Total: -23.65 kcal Atomic # 7 Polarization: -38.32 SS G_CDS: -0.29 Total: -38.61 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -28.85 -10.49 -39.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929775633.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.593 kcal (2) G-P(sol) polarization free energy of solvation -28.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds