Wall clock time and date at job start Sun Mar 29 2020 22:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47078 * 2 1 4 4 H 1.09001 * 115.56553 * 29.29183 * 3 2 1 5 5 C 1.52998 * 117.49805 * 243.60995 * 3 2 1 6 6 C 1.53000 * 60.03371 * 252.51540 * 5 3 2 7 7 H 1.09004 * 117.49949 * 107.47035 * 6 5 3 8 8 C 1.52990 * 117.50284 * 252.47700 * 6 5 3 9 9 N 1.46905 * 109.47217 * 238.55975 * 8 6 5 10 10 C 1.46906 * 110.99431 * 75.54995 * 9 8 6 11 11 C 1.50703 * 109.46390 * 190.00159 * 10 9 8 12 12 H 1.08001 * 120.00707 * 359.97438 * 11 10 9 13 13 C 1.37886 * 119.99621 * 180.02562 * 11 10 9 14 14 N 1.31508 * 119.99966 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99660 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47104 * 90.00072 * 15 13 11 17 17 H 1.48505 * 109.46748 * 209.99833 * 15 13 11 18 18 H 1.48497 * 109.47491 * 329.99676 * 15 13 11 19 19 C 1.46895 * 111.00302 * 199.50336 * 9 8 6 20 20 C 1.52999 * 109.47086 * 75.61579 * 19 9 8 21 21 C 1.53000 * 117.50084 * 243.44539 * 20 19 9 22 22 C 1.52996 * 60.00161 * 252.51424 * 21 20 19 23 23 H 1.09002 * 109.46495 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47278 * 299.99849 * 1 2 3 25 25 H 1.08998 * 109.46932 * 60.00673 * 1 2 3 26 26 H 1.09001 * 109.47766 * 240.00182 * 2 1 3 27 27 H 1.09001 * 109.47438 * 119.99329 * 2 1 3 28 28 H 1.09004 * 117.50462 * 145.01910 * 5 3 2 29 29 H 1.08996 * 117.50028 * 0.02562 * 5 3 2 30 30 H 1.09000 * 109.47058 * 358.55921 * 8 6 5 31 31 H 1.08994 * 109.47747 * 118.56098 * 8 6 5 32 32 H 1.08992 * 109.47363 * 309.99865 * 10 9 8 33 33 H 1.08993 * 109.47093 * 70.00698 * 10 9 8 34 34 H 0.97003 * 119.99760 * 180.02562 * 14 13 11 35 35 H 1.09000 * 109.47358 * 195.62183 * 19 9 8 36 36 H 1.09008 * 109.47046 * 315.62014 * 19 9 8 37 37 H 1.09002 * 115.54662 * 29.16156 * 20 19 9 38 38 H 1.08998 * 117.49827 * 0.02562 * 21 20 19 39 39 H 1.09005 * 117.49543 * 145.02084 * 21 20 19 40 40 H 1.09004 * 117.49742 * 252.51417 * 22 21 20 41 41 H 1.08998 * 117.50086 * 107.48947 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3882 2.1719 0.4811 5 6 2.8442 1.9075 -1.2157 6 6 3.5509 1.6580 0.1182 7 1 4.1809 0.7719 0.1960 8 6 4.0317 2.8805 0.9024 9 7 5.4830 2.7889 1.1107 10 6 6.2131 3.1091 -0.1232 11 6 7.6708 2.7700 0.0535 12 1 8.0201 2.3584 0.9889 13 6 8.5590 2.9865 -0.9788 14 7 8.1338 3.4882 -2.1176 15 14 10.3660 2.5669 -0.7595 16 1 10.6028 1.1628 -1.1807 17 1 11.1904 3.4792 -1.5922 18 1 10.7413 2.7254 0.6685 19 6 5.9120 3.6558 2.2163 20 6 5.5263 3.0111 3.5491 21 6 4.5199 3.7553 4.4289 22 6 5.9953 3.7032 4.8305 23 1 -0.3632 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5137 0.8900 28 1 2.7216 2.9426 -1.5344 29 1 3.0095 1.1859 -2.0157 30 1 3.8017 3.7859 0.3408 31 1 3.5275 2.9141 1.8681 32 1 5.8026 2.5285 -0.9493 33 1 6.1111 4.1723 -0.3402 34 1 8.7586 3.6401 -2.8440 35 1 6.9932 3.7880 2.1759 36 1 5.4237 4.6264 2.1274 37 1 5.4878 1.9217 3.5506 38 1 4.1321 4.7041 4.0580 39 1 3.8188 3.1556 5.0094 40 1 6.2649 3.0692 5.6752 41 1 6.5785 4.6179 4.7240 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929775633.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:28 Heat of formation + Delta-G solvation = 18.416820 kcal Electronic energy + Delta-G solvation = -17027.691105 eV Core-core repulsion = 14521.838944 eV Total energy + Delta-G solvation = -2505.852161 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.78894 -38.47510 -36.66034 -34.57020 -32.91011 -29.56181 -28.52357 -25.84862 -24.62219 -23.23105 -22.90350 -21.55026 -21.07911 -21.01320 -18.54798 -16.87977 -16.80909 -16.13500 -15.79651 -15.48098 -15.27899 -14.89394 -14.57055 -14.18716 -13.97706 -13.50182 -13.32033 -12.99761 -12.90617 -12.69098 -12.56832 -12.32552 -12.26280 -12.13345 -12.06881 -11.90122 -11.78099 -11.32456 -11.08404 -10.80814 -10.72214 -10.53874 -10.41543 -9.00376 -8.19405 -6.28971 1.40190 1.41771 1.52831 2.40423 2.85853 2.98000 3.12627 3.25421 3.76688 3.95053 4.04637 4.11384 4.13516 4.25675 4.32855 4.47357 4.52361 4.55594 4.59829 4.77401 4.79514 4.81610 4.88528 4.89706 4.95576 5.01779 5.07900 5.19503 5.23304 5.26136 5.30237 5.31793 5.35791 5.41574 5.45534 5.57021 5.67774 6.09122 6.40133 6.69524 6.88255 7.40478 8.91750 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.015610 B = 0.007166 C = 0.005247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.283802 B = 3906.322748 C = 5335.071201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.094 4.094 3 C -0.122 4.122 4 H 0.112 0.888 5 C -0.187 4.187 6 C -0.146 4.146 7 H 0.090 0.910 8 C 0.093 3.907 9 N -0.537 5.537 10 C 0.213 3.787 11 C -0.522 4.522 12 H 0.061 0.939 13 C 0.002 3.998 14 N -0.935 5.935 15 Si 0.967 3.033 16 H -0.273 1.273 17 H -0.282 1.282 18 H -0.264 1.264 19 C 0.094 3.906 20 C -0.152 4.152 21 C -0.171 4.171 22 C -0.174 4.174 23 H 0.064 0.936 24 H 0.060 0.940 25 H 0.054 0.946 26 H 0.057 0.943 27 H 0.067 0.933 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.011 0.989 31 H 0.086 0.914 32 H 0.009 0.991 33 H -0.047 1.047 34 H 0.263 0.737 35 H 0.060 0.940 36 H 0.018 0.982 37 H 0.101 0.899 38 H 0.090 0.910 39 H 0.109 0.891 40 H 0.108 0.892 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.086 -3.193 9.300 15.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.131 4.131 3 C -0.141 4.141 4 H 0.130 0.870 5 C -0.224 4.224 6 C -0.165 4.165 7 H 0.108 0.892 8 C -0.035 4.035 9 N -0.260 5.260 10 C 0.087 3.913 11 C -0.560 4.560 12 H 0.080 0.920 13 C -0.196 4.196 14 N -0.575 5.575 15 Si 0.791 3.209 16 H -0.199 1.199 17 H -0.208 1.208 18 H -0.188 1.188 19 C -0.034 4.034 20 C -0.171 4.171 21 C -0.207 4.207 22 C -0.211 4.211 23 H 0.083 0.917 24 H 0.079 0.921 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.085 0.915 28 H 0.101 0.899 29 H 0.107 0.893 30 H 0.029 0.971 31 H 0.104 0.896 32 H 0.027 0.973 33 H -0.029 1.029 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.037 0.963 37 H 0.120 0.880 38 H 0.108 0.892 39 H 0.127 0.873 40 H 0.127 0.873 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -11.917 -3.615 9.254 15.516 hybrid contribution 1.020 0.932 -0.873 1.634 sum -10.897 -2.683 8.381 14.007 Atomic orbital electron populations 1.21711 0.94028 1.02202 1.02109 1.21136 0.96986 0.93086 1.01890 1.22560 0.92098 0.98911 1.00524 0.87020 1.23184 1.05528 1.01679 0.92057 1.22277 0.94964 0.99678 0.99597 0.89162 1.21605 0.88645 0.94237 0.99024 1.61974 1.03851 1.53711 1.06478 1.19326 0.93118 0.91489 0.87387 1.21485 0.93399 1.41403 0.99715 0.92039 1.25895 1.03866 0.95078 0.94741 1.70095 1.36691 1.45969 1.04780 0.85419 0.78857 0.78130 0.78448 1.19883 1.20759 1.18822 1.21510 0.99819 0.92320 0.89719 1.22183 1.05578 0.98978 0.90382 1.23089 0.92507 1.02004 1.03143 1.23006 0.97430 1.02773 0.97889 0.91739 0.92086 0.92713 0.92434 0.91451 0.89936 0.89311 0.97089 0.89605 0.97308 1.02933 0.92777 0.92192 0.96344 0.88048 0.89183 0.87303 0.87336 0.89173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 9.87 71.98 0.71 -1.78 16 2 C -0.09 -2.09 6.22 30.59 0.19 -1.90 16 3 C -0.12 -3.26 5.46 -10.77 -0.06 -3.31 16 4 H 0.11 2.67 8.07 -2.39 -0.02 2.65 16 5 C -0.19 -6.05 9.82 30.59 0.30 -5.75 16 6 C -0.15 -5.11 4.91 -10.77 -0.05 -5.17 16 7 H 0.09 3.52 8.14 -2.38 -0.02 3.50 16 8 C 0.09 3.49 5.09 86.30 0.44 3.92 16 9 N -0.54 -23.96 4.36 -900.81 -3.93 -27.89 16 10 C 0.21 11.75 4.55 85.56 0.39 12.13 16 11 C -0.52 -30.33 8.24 25.60 0.21 -30.12 16 12 H 0.06 3.52 7.31 -2.91 -0.02 3.50 16 13 C 0.00 0.12 5.46 84.66 0.46 0.58 16 14 N -0.93 -57.46 13.29 21.45 0.28 -57.18 16 15 Si 0.97 45.14 29.54 68.60 2.03 47.16 16 16 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 17 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 18 H -0.26 -11.81 7.11 99.48 0.71 -11.11 16 19 C 0.09 3.79 5.07 86.30 0.44 4.23 16 20 C -0.15 -4.80 5.15 -10.79 -0.06 -4.86 16 21 C -0.17 -4.15 10.10 30.59 0.31 -3.84 16 22 C -0.17 -4.40 10.25 30.59 0.31 -4.09 16 23 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 24 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.06 1.34 7.87 -2.39 -0.02 1.32 16 27 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.08 2.72 8.03 -2.39 -0.02 2.71 16 29 H 0.09 2.83 8.03 -2.39 -0.02 2.81 16 30 H 0.01 0.43 7.73 -2.39 -0.02 0.42 16 31 H 0.09 2.80 7.23 -2.39 -0.02 2.79 16 32 H 0.01 0.52 7.43 -2.39 -0.02 0.51 16 33 H -0.05 -2.84 8.12 -2.39 -0.02 -2.86 16 34 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 35 H 0.06 2.73 6.58 -2.39 -0.02 2.71 16 36 H 0.02 0.73 7.73 -2.38 -0.02 0.71 16 37 H 0.10 3.35 8.14 -2.39 -0.02 3.33 16 38 H 0.09 2.16 8.03 -2.39 -0.02 2.15 16 39 H 0.11 2.20 8.14 -2.38 -0.02 2.19 16 40 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 41 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 Total: -1.00 -63.94 332.45 2.93 -61.01 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: 0.95 Total: 16.83 kcal Atomic # 6 Polarization: -43.54 SS G_CDS: 3.60 Total: -39.94 kcal Atomic # 7 Polarization: -81.42 SS G_CDS: -3.64 Total: -85.06 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.16 kcal Total: -63.94 2.93 -61.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929775633.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.429 kcal (2) G-P(sol) polarization free energy of solvation -63.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds