Wall clock time and date at job start Sun Mar 29 2020 22:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53782 * 113.61114 * 2 1 4 4 C 1.53777 * 87.08456 * 89.11287 * 3 2 1 5 5 C 1.53000 * 113.61329 * 139.97838 * 4 3 2 6 6 N 1.46906 * 109.47072 * 175.00448 * 5 4 3 7 7 C 1.46850 * 110.99915 * 45.79054 * 6 5 4 8 8 C 1.53032 * 109.52098 * 185.84118 * 7 6 5 9 9 C 1.53119 * 109.28205 * 300.81949 * 8 7 6 10 10 C 1.53124 * 109.15796 * 57.65213 * 9 8 7 11 11 H 1.09000 * 109.49712 * 62.29080 * 10 9 8 12 12 C 1.50699 * 109.53405 * 182.38416 * 10 9 8 13 13 H 1.08003 * 119.99752 * 119.82763 * 12 10 9 14 14 C 1.37873 * 120.00486 * 299.82708 * 12 10 9 15 15 N 1.31516 * 119.99607 * 0.02562 * 14 12 10 16 16 Si 1.86797 * 120.00204 * 180.02562 * 14 12 10 17 17 H 1.48494 * 109.47232 * 90.00104 * 16 14 12 18 18 H 1.48495 * 109.47135 * 210.00173 * 16 14 12 19 19 H 1.48504 * 109.46971 * 329.99814 * 16 14 12 20 20 C 1.46844 * 110.99887 * 170.00138 * 6 5 4 21 21 C 1.53779 * 113.61421 * 97.49456 * 2 1 3 22 22 H 1.08994 * 109.47144 * 60.00334 * 1 2 3 23 23 H 1.09002 * 109.46522 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47302 * 300.00046 * 1 2 3 25 25 H 1.09000 * 112.85064 * 228.80486 * 2 1 3 26 26 H 1.09004 * 113.61275 * 334.56380 * 3 2 1 27 27 H 1.09003 * 113.61640 * 203.66708 * 3 2 1 28 28 H 1.08998 * 113.61863 * 270.80060 * 4 3 2 29 29 H 1.08993 * 109.47007 * 55.00498 * 5 4 3 30 30 H 1.08996 * 109.47340 * 295.00303 * 5 4 3 31 31 H 1.09005 * 109.46314 * 305.85713 * 7 6 5 32 32 H 1.08998 * 109.46244 * 65.82281 * 7 6 5 33 33 H 1.09004 * 109.50441 * 180.87586 * 8 7 6 34 34 H 1.08999 * 109.50499 * 60.76414 * 8 7 6 35 35 H 1.09001 * 109.51997 * 297.75401 * 9 8 7 36 36 H 1.08999 * 109.52624 * 177.56007 * 9 8 7 37 37 H 0.96999 * 119.99573 * 180.02562 * 15 14 12 38 38 H 1.08995 * 109.46267 * 294.17336 * 20 6 5 39 39 H 1.09000 * 109.46172 * 54.15831 * 20 6 5 40 40 H 1.08999 * 113.61451 * 156.33946 * 21 2 1 41 41 H 1.08998 * 113.61549 * 25.43097 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1460 1.4091 0.0000 4 6 2.0928 1.3469 1.5356 5 6 3.3263 1.9439 2.2161 6 7 3.1291 1.9467 3.6719 7 6 2.5978 0.6579 4.1335 8 6 2.2689 0.7452 5.6255 9 6 3.5386 1.1030 6.4031 10 6 4.0985 2.4247 5.8701 11 1 3.3725 3.2206 6.0358 12 6 5.3807 2.7555 6.5897 13 1 6.3008 2.8585 6.0337 14 6 5.3791 2.9265 7.9578 15 7 4.2587 2.8005 8.6349 16 14 6.9682 3.3372 8.8496 17 1 7.1324 4.8115 8.9149 18 1 6.9206 2.7829 10.2264 19 1 8.1150 2.7433 8.1164 20 6 4.3744 2.2888 4.3709 21 6 2.1460 -0.1838 1.3970 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3632 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 1.9533 -0.6616 -0.7558 26 1 1.4944 2.1704 -0.4290 27 1 3.1590 1.4428 -0.4009 28 1 1.1573 1.7164 1.9555 29 1 3.4746 2.9659 1.8676 30 1 4.2030 1.3450 1.9695 31 1 1.6928 0.4173 3.5756 32 1 3.3425 -0.1212 3.9707 33 1 1.8892 -0.2163 5.9714 34 1 1.5141 1.5147 5.7874 35 1 4.2798 0.3145 6.2728 36 1 3.3000 1.2087 7.4614 37 1 4.2575 2.9212 9.5973 38 1 5.1107 1.5021 4.2071 39 1 4.7596 3.2329 3.9856 40 1 3.1591 -0.5855 1.3781 41 1 1.4945 -0.7083 2.0959 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930922677.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:54 Heat of formation + Delta-G solvation = 2.273758 kcal Electronic energy + Delta-G solvation = -17582.002026 eV Core-core repulsion = 15075.449849 eV Total energy + Delta-G solvation = -2506.552177 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.76580 -37.56554 -33.68845 -31.78922 -30.05515 -29.28985 -26.23432 -25.73934 -24.72211 -22.73875 -21.64865 -20.41805 -18.80228 -18.22975 -16.42717 -15.77952 -15.15936 -14.62204 -14.33654 -13.96047 -13.61408 -13.32072 -13.08345 -12.54193 -12.41494 -12.39323 -12.15904 -11.77528 -11.57456 -11.47135 -10.93123 -10.89517 -10.72569 -10.52981 -10.42663 -10.13084 -9.99434 -9.90453 -9.75573 -9.40111 -8.91426 -8.64469 -8.25662 -7.54097 -5.93485 -3.99509 3.33233 3.39739 3.42815 4.40020 4.51708 4.56411 4.72807 4.76501 4.93189 5.33833 5.36475 5.45725 5.62135 5.65630 5.72246 5.75517 5.80975 5.85813 5.88176 5.94352 6.00402 6.14445 6.16405 6.23638 6.37020 6.38384 6.48456 6.57269 6.61005 6.80369 6.82022 7.04455 7.28388 7.47052 7.76618 7.80700 7.93068 8.14275 8.22725 8.53420 9.04717 9.64531 11.12525 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.055746 B = 0.005075 C = 0.004818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.153414 B = 5516.245667 C = 5809.878097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.118 4.118 3 C -0.132 4.132 4 C -0.104 4.104 5 C 0.064 3.936 6 N -0.538 5.538 7 C 0.060 3.940 8 C -0.119 4.119 9 C -0.110 4.110 10 C 0.055 3.945 11 H 0.034 0.966 12 C -0.514 4.514 13 H 0.053 0.947 14 C 0.063 3.937 15 N -0.889 5.889 16 Si 0.890 3.110 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.275 1.275 20 C 0.068 3.932 21 C -0.135 4.135 22 H 0.055 0.945 23 H 0.054 0.946 24 H 0.058 0.942 25 H 0.070 0.930 26 H 0.065 0.935 27 H 0.078 0.922 28 H 0.096 0.904 29 H 0.068 0.932 30 H 0.025 0.975 31 H 0.066 0.934 32 H 0.019 0.981 33 H 0.044 0.956 34 H 0.059 0.941 35 H 0.028 0.972 36 H 0.089 0.911 37 H 0.259 0.741 38 H 0.017 0.983 39 H 0.057 0.943 40 H 0.076 0.924 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.833 -5.285 -14.291 16.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.136 4.136 3 C -0.170 4.170 4 C -0.123 4.123 5 C -0.064 4.064 6 N -0.262 5.262 7 C -0.068 4.068 8 C -0.157 4.157 9 C -0.148 4.148 10 C 0.036 3.964 11 H 0.052 0.948 12 C -0.553 4.553 13 H 0.071 0.929 14 C -0.138 4.138 15 N -0.528 5.528 16 Si 0.718 3.282 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.200 1.200 20 C -0.059 4.059 21 C -0.172 4.172 22 H 0.074 0.926 23 H 0.073 0.927 24 H 0.077 0.923 25 H 0.088 0.912 26 H 0.084 0.916 27 H 0.096 0.904 28 H 0.114 0.886 29 H 0.087 0.913 30 H 0.043 0.957 31 H 0.084 0.916 32 H 0.037 0.963 33 H 0.062 0.938 34 H 0.078 0.922 35 H 0.047 0.953 36 H 0.108 0.892 37 H 0.069 0.931 38 H 0.035 0.965 39 H 0.075 0.925 40 H 0.095 0.905 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.239 -4.916 -13.988 16.086 hybrid contribution 1.569 -0.426 0.359 1.665 sum -4.670 -5.342 -13.629 15.365 Atomic orbital electron populations 1.21586 0.94063 1.01550 1.01911 1.22300 0.95719 0.97632 0.97974 1.22997 1.00835 0.96728 0.96475 1.22592 0.99643 0.95405 0.94658 1.22093 0.95272 1.00016 0.89010 1.62091 1.30730 1.30576 1.02824 1.22187 0.98198 0.89588 0.96826 1.21701 1.00427 0.99638 0.93959 1.21639 0.93256 0.97887 1.02011 1.18658 0.96252 0.94105 0.87399 0.94831 1.21165 0.94394 1.47529 0.92203 0.92915 1.24932 0.96014 0.95315 0.97580 1.69900 1.25610 1.49923 1.07322 0.86634 0.84029 0.78539 0.79014 1.20717 1.21290 1.20047 1.22292 0.87780 0.98191 0.97675 1.23225 1.00917 0.96713 0.96347 0.92627 0.92694 0.92267 0.91157 0.91608 0.90385 0.88552 0.91327 0.95666 0.91587 0.96270 0.93758 0.92229 0.95302 0.89236 0.93111 0.96499 0.92470 0.90490 0.91307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.21 9.59 37.16 0.36 -0.86 16 2 C -0.12 -1.18 4.55 -89.81 -0.41 -1.59 16 3 C -0.13 -1.41 7.23 -25.92 -0.19 -1.60 16 4 C -0.10 -1.34 2.43 -89.80 -0.22 -1.55 16 5 C 0.06 1.00 5.18 -3.82 -0.02 0.98 16 6 N -0.54 -10.25 4.81 -234.67 -1.13 -11.37 16 7 C 0.06 1.08 4.32 -3.83 -0.02 1.06 16 8 C -0.12 -2.41 6.09 -26.65 -0.16 -2.57 16 9 C -0.11 -2.67 5.03 -26.61 -0.13 -2.80 16 10 C 0.05 1.40 2.26 -91.69 -0.21 1.20 16 11 H 0.03 0.96 8.14 -51.93 -0.42 0.53 16 12 C -0.51 -14.37 8.56 -34.44 -0.29 -14.67 16 13 H 0.05 1.45 7.74 -52.48 -0.41 1.05 16 14 C 0.06 1.76 5.31 -17.82 -0.09 1.66 16 15 N -0.89 -25.71 11.36 55.43 0.63 -25.08 16 16 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 17 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 18 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 C 0.07 1.49 4.65 -3.84 -0.02 1.47 16 21 C -0.13 -1.59 5.63 -25.92 -0.15 -1.73 16 22 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 23 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 24 H 0.06 0.57 7.34 -51.93 -0.38 0.19 16 25 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.07 0.66 8.10 -51.93 -0.42 0.24 16 27 H 0.08 0.81 8.10 -51.93 -0.42 0.39 16 28 H 0.10 1.31 7.46 -51.93 -0.39 0.92 16 29 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.03 0.40 7.78 -51.93 -0.40 -0.01 16 31 H 0.07 1.05 4.82 -51.93 -0.25 0.80 16 32 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.09 2.42 6.16 -51.93 -0.32 2.10 16 37 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 38 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 39 H 0.06 1.25 8.12 -51.93 -0.42 0.82 16 40 H 0.08 0.94 7.90 -51.93 -0.41 0.53 16 41 H 0.07 0.82 7.01 -51.93 -0.36 0.45 16 LS Contribution 308.12 15.07 4.64 4.64 Total: -1.00 -28.23 308.12 -9.98 -38.21 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -7.55 Total: -1.88 kcal Atomic # 6 Polarization: -19.45 SS G_CDS: -1.55 Total: -21.00 kcal Atomic # 7 Polarization: -35.96 SS G_CDS: -0.50 Total: -36.46 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -28.23 -9.98 -38.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930922677.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.483 kcal (2) G-P(sol) polarization free energy of solvation -28.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds