Wall clock time and date at job start Sun Mar 29 2020 22:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53782 * 113.61114 * 2 1 4 4 C 1.53777 * 87.08456 * 89.11287 * 3 2 1 5 5 C 1.53000 * 113.61329 * 139.97838 * 4 3 2 6 6 N 1.46906 * 109.47072 * 175.00448 * 5 4 3 7 7 C 1.46850 * 110.99915 * 45.79054 * 6 5 4 8 8 C 1.53032 * 109.52098 * 185.84118 * 7 6 5 9 9 C 1.53119 * 109.28205 * 300.81949 * 8 7 6 10 10 C 1.53124 * 109.15796 * 57.65213 * 9 8 7 11 11 H 1.09000 * 109.49712 * 62.29080 * 10 9 8 12 12 C 1.50699 * 109.53405 * 182.38416 * 10 9 8 13 13 H 1.08003 * 119.99752 * 119.82763 * 12 10 9 14 14 C 1.37873 * 120.00486 * 299.82708 * 12 10 9 15 15 N 1.31516 * 119.99607 * 0.02562 * 14 12 10 16 16 Si 1.86797 * 120.00204 * 180.02562 * 14 12 10 17 17 H 1.48494 * 109.47232 * 90.00104 * 16 14 12 18 18 H 1.48495 * 109.47135 * 210.00173 * 16 14 12 19 19 H 1.48504 * 109.46971 * 329.99814 * 16 14 12 20 20 C 1.46844 * 110.99887 * 170.00138 * 6 5 4 21 21 C 1.53779 * 113.61421 * 97.49456 * 2 1 3 22 22 H 1.08994 * 109.47144 * 60.00334 * 1 2 3 23 23 H 1.09002 * 109.46522 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47302 * 300.00046 * 1 2 3 25 25 H 1.09000 * 112.85064 * 228.80486 * 2 1 3 26 26 H 1.09004 * 113.61275 * 334.56380 * 3 2 1 27 27 H 1.09003 * 113.61640 * 203.66708 * 3 2 1 28 28 H 1.08998 * 113.61863 * 270.80060 * 4 3 2 29 29 H 1.08993 * 109.47007 * 55.00498 * 5 4 3 30 30 H 1.08996 * 109.47340 * 295.00303 * 5 4 3 31 31 H 1.09005 * 109.46314 * 305.85713 * 7 6 5 32 32 H 1.08998 * 109.46244 * 65.82281 * 7 6 5 33 33 H 1.09004 * 109.50441 * 180.87586 * 8 7 6 34 34 H 1.08999 * 109.50499 * 60.76414 * 8 7 6 35 35 H 1.09001 * 109.51997 * 297.75401 * 9 8 7 36 36 H 1.08999 * 109.52624 * 177.56007 * 9 8 7 37 37 H 0.96999 * 119.99573 * 180.02562 * 15 14 12 38 38 H 1.08995 * 109.46267 * 294.17336 * 20 6 5 39 39 H 1.09000 * 109.46172 * 54.15831 * 20 6 5 40 40 H 1.08999 * 113.61451 * 156.33946 * 21 2 1 41 41 H 1.08998 * 113.61549 * 25.43097 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1460 1.4091 0.0000 4 6 2.0928 1.3469 1.5356 5 6 3.3263 1.9439 2.2161 6 7 3.1291 1.9467 3.6719 7 6 2.5978 0.6579 4.1335 8 6 2.2689 0.7452 5.6255 9 6 3.5386 1.1030 6.4031 10 6 4.0985 2.4247 5.8701 11 1 3.3725 3.2206 6.0358 12 6 5.3807 2.7555 6.5897 13 1 6.3008 2.8585 6.0337 14 6 5.3791 2.9265 7.9578 15 7 4.2587 2.8005 8.6349 16 14 6.9682 3.3372 8.8496 17 1 7.1324 4.8115 8.9149 18 1 6.9206 2.7829 10.2264 19 1 8.1150 2.7433 8.1164 20 6 4.3744 2.2888 4.3709 21 6 2.1460 -0.1838 1.3970 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3632 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 1.9533 -0.6616 -0.7558 26 1 1.4944 2.1704 -0.4290 27 1 3.1590 1.4428 -0.4009 28 1 1.1573 1.7164 1.9555 29 1 3.4746 2.9659 1.8676 30 1 4.2030 1.3450 1.9695 31 1 1.6928 0.4173 3.5756 32 1 3.3425 -0.1212 3.9707 33 1 1.8892 -0.2163 5.9714 34 1 1.5141 1.5147 5.7874 35 1 4.2798 0.3145 6.2728 36 1 3.3000 1.2087 7.4614 37 1 4.2575 2.9212 9.5973 38 1 5.1107 1.5021 4.2071 39 1 4.7596 3.2329 3.9856 40 1 3.1591 -0.5855 1.3781 41 1 1.4945 -0.7083 2.0959 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930922677.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:54 Heat of formation + Delta-G solvation = -13.068717 kcal Electronic energy + Delta-G solvation = -17582.667325 eV Core-core repulsion = 15075.449849 eV Total energy + Delta-G solvation = -2507.217476 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.86774 -39.06346 -35.53365 -33.55376 -31.77856 -30.45953 -27.40982 -27.14568 -26.26767 -24.13346 -23.34837 -21.82604 -20.39289 -19.32414 -18.44320 -17.17747 -16.55766 -16.16673 -15.73158 -15.34192 -14.91826 -14.86227 -14.46767 -14.19947 -13.95646 -13.66636 -13.20197 -13.10311 -12.87169 -12.84102 -12.77277 -12.50380 -12.48590 -11.90537 -11.72785 -11.59741 -11.45838 -11.31857 -11.12498 -10.90916 -10.66238 -10.60759 -10.36233 -9.08399 -8.08243 -6.22840 1.41190 1.41220 1.51799 2.42607 3.12723 3.18483 3.70018 3.78599 3.83689 3.92537 4.24227 4.28642 4.32430 4.49071 4.56420 4.61966 4.64331 4.75473 4.83998 4.87084 4.89279 4.92308 4.94569 4.99732 5.03054 5.11014 5.12196 5.18413 5.27341 5.35739 5.39643 5.49196 5.54795 5.62893 5.68126 5.96955 6.13043 6.21815 6.42289 6.46976 6.89754 7.45068 8.96522 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.055746 B = 0.005075 C = 0.004818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.153414 B = 5516.245667 C = 5809.878097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.109 4.109 3 C -0.126 4.126 4 C -0.107 4.107 5 C 0.065 3.935 6 N -0.548 5.548 7 C 0.067 3.933 8 C -0.114 4.114 9 C -0.103 4.103 10 C 0.052 3.948 11 H -0.004 1.004 12 C -0.538 4.538 13 H 0.050 0.950 14 C 0.014 3.986 15 N -0.916 5.916 16 Si 0.956 3.044 17 H -0.275 1.275 18 H -0.282 1.282 19 H -0.269 1.269 20 C 0.081 3.919 21 C -0.137 4.137 22 H 0.065 0.935 23 H 0.062 0.938 24 H 0.051 0.949 25 H 0.081 0.919 26 H 0.074 0.926 27 H 0.082 0.918 28 H 0.090 0.910 29 H 0.069 0.931 30 H 0.026 0.974 31 H 0.095 0.905 32 H 0.020 0.980 33 H 0.068 0.932 34 H 0.049 0.951 35 H 0.020 0.980 36 H 0.057 0.943 37 H 0.261 0.739 38 H 0.012 0.988 39 H 0.054 0.946 40 H 0.072 0.928 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.963 -6.052 -15.871 18.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.127 4.127 3 C -0.163 4.163 4 C -0.125 4.125 5 C -0.062 4.062 6 N -0.273 5.273 7 C -0.060 4.060 8 C -0.152 4.152 9 C -0.141 4.141 10 C 0.034 3.966 11 H 0.014 0.986 12 C -0.577 4.577 13 H 0.068 0.932 14 C -0.185 4.185 15 N -0.555 5.555 16 Si 0.781 3.219 17 H -0.201 1.201 18 H -0.207 1.207 19 H -0.194 1.194 20 C -0.046 4.046 21 C -0.174 4.174 22 H 0.084 0.916 23 H 0.081 0.919 24 H 0.070 0.930 25 H 0.099 0.901 26 H 0.092 0.908 27 H 0.100 0.900 28 H 0.109 0.891 29 H 0.087 0.913 30 H 0.044 0.956 31 H 0.113 0.887 32 H 0.038 0.962 33 H 0.087 0.913 34 H 0.068 0.932 35 H 0.039 0.961 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.030 0.970 39 H 0.072 0.928 40 H 0.091 0.909 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.374 -5.685 -15.588 17.775 hybrid contribution 1.588 -0.166 0.850 1.808 sum -4.787 -5.851 -14.738 16.564 Atomic orbital electron populations 1.21599 0.93271 1.02167 1.02076 1.22272 0.96289 0.97179 0.96975 1.22982 1.01444 0.97524 0.94395 1.22576 0.97790 0.96127 0.96040 1.22175 0.96896 1.00485 0.86679 1.62030 1.28995 1.31412 1.04863 1.22166 0.99365 0.89069 0.95405 1.21636 0.97918 1.00471 0.95163 1.21451 0.95024 0.96930 1.00719 1.18586 0.94556 0.93481 0.90019 0.98620 1.21528 0.95177 1.48028 0.92963 0.93163 1.25731 0.99302 0.95078 0.98351 1.70043 1.27563 1.50347 1.07539 0.85597 0.80077 0.78455 0.77766 1.20073 1.20749 1.19352 1.21966 0.89086 0.97973 0.95624 1.23226 1.00929 0.95577 0.97682 0.91586 0.91902 0.93005 0.90068 0.90752 0.89972 0.89130 0.91271 0.95572 0.88685 0.96177 0.91331 0.93197 0.96087 0.92416 0.93037 0.97017 0.92795 0.90907 0.91332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.04 9.59 71.98 0.69 -1.35 16 2 C -0.11 -1.86 4.55 -10.27 -0.05 -1.90 16 3 C -0.13 -2.33 7.23 31.12 0.23 -2.10 16 4 C -0.11 -2.50 2.43 -10.27 -0.02 -2.53 16 5 C 0.07 1.94 5.18 86.30 0.45 2.38 16 6 N -0.55 -20.58 4.81 -896.38 -4.31 -24.89 16 7 C 0.07 2.34 4.32 86.32 0.37 2.71 16 8 C -0.11 -4.56 6.09 30.64 0.19 -4.37 16 9 C -0.10 -5.13 5.03 30.68 0.15 -4.97 16 10 C 0.05 2.78 2.26 -11.49 -0.03 2.75 16 11 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 12 C -0.54 -30.82 8.56 25.60 0.22 -30.60 16 13 H 0.05 2.82 7.74 -2.91 -0.02 2.80 16 14 C 0.01 0.80 5.31 84.65 0.45 1.25 16 15 N -0.92 -54.30 11.36 21.45 0.24 -54.06 16 16 Si 0.96 44.51 29.54 68.60 2.03 46.54 16 17 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 18 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 19 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 20 C 0.08 3.62 4.65 86.33 0.40 4.03 16 21 C -0.14 -2.87 5.63 31.12 0.18 -2.70 16 22 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 23 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 24 H 0.05 0.87 7.34 -2.39 -0.02 0.85 16 25 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.07 1.27 8.10 -2.39 -0.02 1.25 16 27 H 0.08 1.48 8.10 -2.39 -0.02 1.46 16 28 H 0.09 2.27 7.46 -2.39 -0.02 2.25 16 29 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.03 0.78 7.78 -2.39 -0.02 0.76 16 31 H 0.10 2.79 4.82 -2.38 -0.01 2.78 16 32 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.07 2.39 8.14 -2.38 -0.02 2.37 16 34 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.06 3.23 6.16 -2.39 -0.01 3.21 16 37 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 38 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 39 H 0.05 2.39 8.12 -2.39 -0.02 2.37 16 40 H 0.07 1.61 7.90 -2.39 -0.02 1.59 16 41 H 0.07 1.44 7.01 -2.39 -0.02 1.43 16 Total: -1.00 -61.39 308.12 2.14 -59.24 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: 0.96 Total: 10.57 kcal Atomic # 6 Polarization: -40.62 SS G_CDS: 3.22 Total: -37.40 kcal Atomic # 7 Polarization: -74.88 SS G_CDS: -4.06 Total: -78.95 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -61.39 2.14 -59.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930922677.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.172 kcal (2) G-P(sol) polarization free energy of solvation -61.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds