Wall clock time and date at job start Sun Mar 29 2020 22:02:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53782 * 113.61865 * 2 1 4 4 C 1.53781 * 87.08224 * 89.11418 * 3 2 1 5 5 C 1.52997 * 113.61559 * 139.98357 * 4 3 2 6 6 N 1.46899 * 109.47254 * 174.99888 * 5 4 3 7 7 C 1.46843 * 111.00049 * 294.21280 * 6 5 4 8 8 C 1.53043 * 109.52446 * 174.16274 * 7 6 5 9 9 C 1.53115 * 109.28035 * 59.17281 * 8 7 6 10 10 C 1.53119 * 109.16391 * 302.35079 * 9 8 7 11 11 H 1.09002 * 109.50021 * 297.71564 * 10 9 8 12 12 C 1.50700 * 109.50789 * 177.59456 * 10 9 8 13 13 H 1.07998 * 120.00243 * 240.19782 * 12 10 9 14 14 C 1.37882 * 119.99823 * 60.19159 * 12 10 9 15 15 N 1.31509 * 119.99730 * 0.02562 * 14 12 10 16 16 Si 1.86791 * 119.99835 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47122 * 90.00191 * 16 14 12 18 18 H 1.48496 * 109.47408 * 210.00092 * 16 14 12 19 19 H 1.48505 * 109.47369 * 330.00430 * 16 14 12 20 20 C 1.46842 * 111.00041 * 169.99637 * 6 5 4 21 21 C 1.53782 * 113.61203 * 97.49848 * 2 1 3 22 22 H 1.08999 * 109.46950 * 60.00158 * 1 2 3 23 23 H 1.09000 * 109.47556 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47333 * 300.00433 * 1 2 3 25 25 H 1.09000 * 112.90793 * 228.73973 * 2 1 3 26 26 H 1.09003 * 113.61213 * 334.56824 * 3 2 1 27 27 H 1.08994 * 113.61682 * 203.66451 * 3 2 1 28 28 H 1.09006 * 113.61315 * 270.80477 * 4 3 2 29 29 H 1.09002 * 109.47153 * 54.99884 * 5 4 3 30 30 H 1.09001 * 109.46832 * 295.00075 * 5 4 3 31 31 H 1.09004 * 109.46019 * 294.17499 * 7 6 5 32 32 H 1.08999 * 109.46883 * 54.14319 * 7 6 5 33 33 H 1.09007 * 109.49669 * 299.23395 * 8 7 6 34 34 H 1.08996 * 109.50102 * 179.12000 * 8 7 6 35 35 H 1.08996 * 109.52692 * 182.44132 * 9 8 7 36 36 H 1.09007 * 109.57302 * 62.28363 * 9 8 7 37 37 H 0.97006 * 119.99707 * 180.02562 * 15 14 12 38 38 H 1.08998 * 109.46877 * 305.85973 * 20 6 5 39 39 H 1.09002 * 109.46171 * 65.83843 * 20 6 5 40 40 H 1.08998 * 113.61542 * 156.33317 * 21 2 1 41 41 H 1.08998 * 113.61766 * 25.43026 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1461 1.4090 0.0000 4 6 2.0930 1.3468 1.5356 5 6 3.3264 1.9436 2.2162 6 7 3.1292 1.9466 3.6719 7 6 2.0396 2.8540 4.0535 8 6 1.7662 2.7226 5.5536 9 6 3.0391 3.0677 6.3316 10 6 4.1708 2.1402 5.8806 11 1 3.9095 1.1077 6.1128 12 6 5.4425 2.5119 6.5987 13 1 6.3097 2.8230 6.0352 14 6 5.4988 2.4549 7.9752 15 7 4.4429 2.0757 8.6613 16 14 7.0748 2.9163 8.8653 17 1 7.0619 4.3688 9.1739 18 1 7.1743 2.1427 10.1290 19 1 8.2412 2.6043 8.0008 20 6 4.3744 2.2884 4.3710 21 6 2.1459 -0.1839 1.3970 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 1.9542 -0.6621 -0.7548 26 1 1.4946 2.1704 -0.4289 27 1 3.1591 1.4426 -0.4008 28 1 1.1573 1.7164 1.9555 29 1 3.4749 2.9657 1.8677 30 1 4.2030 1.3447 1.9695 31 1 2.3252 3.8808 3.8250 32 1 1.1392 2.5951 3.4963 33 1 1.4671 1.6993 5.7807 34 1 0.9680 3.4076 5.8394 35 1 2.8616 2.9336 7.3986 36 1 3.3172 4.1034 6.1359 37 1 4.4824 2.0360 9.6297 38 1 5.1700 1.6188 4.0444 39 1 4.6491 3.3179 4.1412 40 1 3.1589 -0.5858 1.3781 41 1 1.4944 -0.7084 2.0959 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930922679.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:56 Heat of formation + Delta-G solvation = 0.006297 kcal Electronic energy + Delta-G solvation = -17466.485900 eV Core-core repulsion = 14959.835399 eV Total energy + Delta-G solvation = -2506.650501 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.51023 -37.68678 -33.69807 -31.79362 -29.97349 -29.37239 -26.04041 -25.53696 -24.92309 -22.69832 -21.67111 -20.56102 -18.53471 -18.38464 -16.39945 -15.48561 -15.12143 -14.83669 -14.42519 -13.82920 -13.63027 -13.35833 -13.07723 -12.54159 -12.36321 -12.34789 -12.14108 -11.91101 -11.63961 -11.21295 -10.92439 -10.83573 -10.66160 -10.64563 -10.39882 -10.10275 -10.03692 -9.84309 -9.74050 -9.40452 -8.92736 -8.65731 -8.26258 -7.54868 -5.93895 -3.99876 3.32842 3.39568 3.42704 4.38035 4.52071 4.62145 4.76544 4.82119 5.10034 5.36092 5.38728 5.44625 5.61423 5.70196 5.76126 5.80667 5.82169 5.87920 5.89921 5.98977 6.03256 6.14529 6.20790 6.23908 6.35364 6.46635 6.48261 6.57431 6.66189 6.77840 6.80923 7.03083 7.27667 7.46257 7.75287 7.80171 7.91857 8.13779 8.22150 8.52941 9.04339 9.64157 11.12121 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.047207 B = 0.005044 C = 0.004845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.990826 B = 5550.175023 C = 5777.308064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.120 4.120 3 C -0.135 4.135 4 C -0.103 4.103 5 C 0.065 3.935 6 N -0.536 5.536 7 C 0.062 3.938 8 C -0.117 4.117 9 C -0.110 4.110 10 C 0.055 3.945 11 H 0.034 0.966 12 C -0.514 4.514 13 H 0.053 0.947 14 C 0.063 3.937 15 N -0.889 5.889 16 Si 0.890 3.110 17 H -0.282 1.282 18 H -0.287 1.287 19 H -0.275 1.275 20 C 0.068 3.932 21 C -0.120 4.120 22 H 0.053 0.947 23 H 0.054 0.946 24 H 0.057 0.943 25 H 0.070 0.930 26 H 0.062 0.938 27 H 0.078 0.922 28 H 0.090 0.910 29 H 0.023 0.977 30 H 0.068 0.932 31 H 0.020 0.980 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.044 0.956 35 H 0.090 0.910 36 H 0.028 0.972 37 H 0.259 0.741 38 H 0.057 0.943 39 H 0.016 0.984 40 H 0.078 0.922 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.626 -1.527 -14.300 15.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.138 4.138 3 C -0.173 4.173 4 C -0.121 4.121 5 C -0.064 4.064 6 N -0.260 5.260 7 C -0.066 4.066 8 C -0.155 4.155 9 C -0.148 4.148 10 C 0.036 3.964 11 H 0.052 0.948 12 C -0.553 4.553 13 H 0.071 0.929 14 C -0.138 4.138 15 N -0.527 5.527 16 Si 0.718 3.282 17 H -0.208 1.208 18 H -0.213 1.213 19 H -0.200 1.200 20 C -0.059 4.059 21 C -0.158 4.158 22 H 0.072 0.928 23 H 0.073 0.927 24 H 0.076 0.924 25 H 0.088 0.912 26 H 0.081 0.919 27 H 0.096 0.904 28 H 0.108 0.892 29 H 0.041 0.959 30 H 0.087 0.913 31 H 0.038 0.962 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.063 0.937 35 H 0.108 0.892 36 H 0.047 0.953 37 H 0.069 0.931 38 H 0.076 0.924 39 H 0.035 0.965 40 H 0.097 0.903 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.808 -2.031 -13.965 15.668 hybrid contribution 1.123 1.164 0.294 1.644 sum -5.685 -0.867 -13.671 14.831 Atomic orbital electron populations 1.21579 0.94227 1.01551 1.01702 1.22322 0.95615 0.97464 0.98437 1.23031 1.00777 0.96790 0.96657 1.22560 0.99060 0.96465 0.94042 1.22072 0.97168 0.98284 0.88844 1.61968 1.07587 1.52019 1.04448 1.22055 0.93938 0.93248 0.97349 1.21673 0.99236 1.00910 0.93684 1.21643 0.93252 0.97936 1.01993 1.18659 0.93915 0.96379 0.87438 0.94800 1.21165 0.97576 1.45103 0.91458 0.92909 1.24931 0.96118 0.95199 0.97589 1.69897 1.28466 1.47769 1.06613 0.86636 0.83998 0.78359 0.79230 1.20817 1.21254 1.19984 1.22295 0.88917 0.97014 0.97679 1.22921 1.00951 0.96340 0.95571 0.92797 0.92658 0.92386 0.91167 0.91943 0.90371 0.89208 0.95856 0.91309 0.96199 0.92348 0.92147 0.93707 0.89209 0.95272 0.93105 0.92442 0.96539 0.90293 0.91507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.26 9.59 37.15 0.36 -0.90 16 2 C -0.12 -1.25 4.55 -89.81 -0.41 -1.66 16 3 C -0.13 -1.46 7.23 -25.92 -0.19 -1.65 16 4 C -0.10 -1.34 3.36 -89.81 -0.30 -1.64 16 5 C 0.06 1.00 4.80 -3.83 -0.02 0.99 16 6 N -0.54 -10.14 4.66 -234.67 -1.09 -11.23 16 7 C 0.06 1.12 5.31 -3.83 -0.02 1.10 16 8 C -0.12 -2.35 6.09 -26.65 -0.16 -2.51 16 9 C -0.11 -2.67 5.03 -26.61 -0.13 -2.80 16 10 C 0.05 1.40 2.26 -91.69 -0.21 1.19 16 11 H 0.03 0.96 8.14 -51.93 -0.42 0.54 16 12 C -0.51 -14.32 8.56 -34.44 -0.29 -14.62 16 13 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 14 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 15 N -0.89 -25.65 11.36 55.43 0.63 -25.02 16 16 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 17 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 18 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 20 C 0.07 1.49 4.68 -3.84 -0.02 1.47 16 21 C -0.12 -1.49 7.19 -25.92 -0.19 -1.68 16 22 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 23 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.06 0.58 7.34 -51.93 -0.38 0.20 16 25 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.06 0.64 8.10 -51.93 -0.42 0.22 16 27 H 0.08 0.82 8.10 -51.93 -0.42 0.40 16 28 H 0.09 1.22 5.68 -51.93 -0.29 0.92 16 29 H 0.02 0.36 8.12 -51.93 -0.42 -0.06 16 30 H 0.07 1.05 7.69 -51.93 -0.40 0.66 16 31 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.93 6.08 -51.93 -0.32 0.62 16 33 H 0.06 1.25 8.14 -51.92 -0.42 0.83 16 34 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.09 2.42 6.17 -51.93 -0.32 2.10 16 36 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 38 H 0.06 1.24 8.02 -51.93 -0.42 0.83 16 39 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.08 1.00 7.90 -51.93 -0.41 0.59 16 41 H 0.07 0.87 8.10 -51.93 -0.42 0.45 16 LS Contribution 311.45 15.07 4.69 4.69 Total: -1.00 -28.07 311.45 -10.03 -38.11 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -7.57 Total: -1.95 kcal Atomic # 6 Polarization: -19.37 SS G_CDS: -1.68 Total: -21.04 kcal Atomic # 7 Polarization: -35.79 SS G_CDS: -0.46 Total: -36.25 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -28.07 -10.03 -38.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930922679.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.112 kcal (2) G-P(sol) polarization free energy of solvation -28.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds