Wall clock time and date at job start Sun Mar 29 2020 22:02:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53782 * 113.61865 * 2 1 4 4 C 1.53781 * 87.08224 * 89.11418 * 3 2 1 5 5 C 1.52997 * 113.61559 * 139.98357 * 4 3 2 6 6 N 1.46899 * 109.47254 * 174.99888 * 5 4 3 7 7 C 1.46843 * 111.00049 * 294.21280 * 6 5 4 8 8 C 1.53043 * 109.52446 * 174.16274 * 7 6 5 9 9 C 1.53115 * 109.28035 * 59.17281 * 8 7 6 10 10 C 1.53119 * 109.16391 * 302.35079 * 9 8 7 11 11 H 1.09002 * 109.50021 * 297.71564 * 10 9 8 12 12 C 1.50700 * 109.50789 * 177.59456 * 10 9 8 13 13 H 1.07998 * 120.00243 * 240.19782 * 12 10 9 14 14 C 1.37882 * 119.99823 * 60.19159 * 12 10 9 15 15 N 1.31509 * 119.99730 * 0.02562 * 14 12 10 16 16 Si 1.86791 * 119.99835 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47122 * 90.00191 * 16 14 12 18 18 H 1.48496 * 109.47408 * 210.00092 * 16 14 12 19 19 H 1.48505 * 109.47369 * 330.00430 * 16 14 12 20 20 C 1.46842 * 111.00041 * 169.99637 * 6 5 4 21 21 C 1.53782 * 113.61203 * 97.49848 * 2 1 3 22 22 H 1.08999 * 109.46950 * 60.00158 * 1 2 3 23 23 H 1.09000 * 109.47556 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47333 * 300.00433 * 1 2 3 25 25 H 1.09000 * 112.90793 * 228.73973 * 2 1 3 26 26 H 1.09003 * 113.61213 * 334.56824 * 3 2 1 27 27 H 1.08994 * 113.61682 * 203.66451 * 3 2 1 28 28 H 1.09006 * 113.61315 * 270.80477 * 4 3 2 29 29 H 1.09002 * 109.47153 * 54.99884 * 5 4 3 30 30 H 1.09001 * 109.46832 * 295.00075 * 5 4 3 31 31 H 1.09004 * 109.46019 * 294.17499 * 7 6 5 32 32 H 1.08999 * 109.46883 * 54.14319 * 7 6 5 33 33 H 1.09007 * 109.49669 * 299.23395 * 8 7 6 34 34 H 1.08996 * 109.50102 * 179.12000 * 8 7 6 35 35 H 1.08996 * 109.52692 * 182.44132 * 9 8 7 36 36 H 1.09007 * 109.57302 * 62.28363 * 9 8 7 37 37 H 0.97006 * 119.99707 * 180.02562 * 15 14 12 38 38 H 1.08998 * 109.46877 * 305.85973 * 20 6 5 39 39 H 1.09002 * 109.46171 * 65.83843 * 20 6 5 40 40 H 1.08998 * 113.61542 * 156.33317 * 21 2 1 41 41 H 1.08998 * 113.61766 * 25.43026 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1461 1.4090 0.0000 4 6 2.0930 1.3468 1.5356 5 6 3.3264 1.9436 2.2162 6 7 3.1292 1.9466 3.6719 7 6 2.0396 2.8540 4.0535 8 6 1.7662 2.7226 5.5536 9 6 3.0391 3.0677 6.3316 10 6 4.1708 2.1402 5.8806 11 1 3.9095 1.1077 6.1128 12 6 5.4425 2.5119 6.5987 13 1 6.3097 2.8230 6.0352 14 6 5.4988 2.4549 7.9752 15 7 4.4429 2.0757 8.6613 16 14 7.0748 2.9163 8.8653 17 1 7.0619 4.3688 9.1739 18 1 7.1743 2.1427 10.1290 19 1 8.2412 2.6043 8.0008 20 6 4.3744 2.2884 4.3710 21 6 2.1459 -0.1839 1.3970 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 1.9542 -0.6621 -0.7548 26 1 1.4946 2.1704 -0.4289 27 1 3.1591 1.4426 -0.4008 28 1 1.1573 1.7164 1.9555 29 1 3.4749 2.9657 1.8677 30 1 4.2030 1.3447 1.9695 31 1 2.3252 3.8808 3.8250 32 1 1.1392 2.5951 3.4963 33 1 1.4671 1.6993 5.7807 34 1 0.9680 3.4076 5.8394 35 1 2.8616 2.9336 7.3986 36 1 3.3172 4.1034 6.1359 37 1 4.4824 2.0360 9.6297 38 1 5.1700 1.6188 4.0444 39 1 4.6491 3.3179 4.1412 40 1 3.1589 -0.5858 1.3781 41 1 1.4944 -0.7084 2.0959 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930922679.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:56 Heat of formation + Delta-G solvation = -14.884548 kcal Electronic energy + Delta-G solvation = -17467.131616 eV Core-core repulsion = 14959.835399 eV Total energy + Delta-G solvation = -2507.296217 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.61908 -39.18766 -35.55234 -33.54730 -31.73830 -30.51886 -27.28584 -26.89696 -26.44991 -24.12578 -23.38605 -21.91402 -20.34284 -19.31456 -18.43777 -16.96861 -16.45017 -16.19469 -16.02423 -15.19784 -14.97826 -14.85229 -14.37504 -14.31027 -13.99160 -13.62518 -13.21336 -13.07998 -12.91996 -12.83912 -12.72912 -12.52141 -12.31525 -11.84169 -11.77566 -11.69169 -11.54555 -11.30864 -10.99965 -10.84952 -10.69551 -10.61500 -10.36454 -9.07300 -8.08065 -6.22510 1.41031 1.41439 1.51999 2.42731 3.08748 3.18743 3.74431 3.82620 3.86315 4.02475 4.22131 4.25691 4.32167 4.51227 4.54842 4.63167 4.67512 4.75798 4.77212 4.90122 4.91255 4.93143 4.96898 5.02559 5.04716 5.11345 5.15438 5.18394 5.26694 5.37136 5.40443 5.52334 5.57141 5.63081 5.71212 5.97359 6.13163 6.22183 6.41838 6.47137 6.90183 7.45367 8.96688 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.047207 B = 0.005044 C = 0.004845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.990826 B = 5550.175023 C = 5777.308064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.111 4.111 3 C -0.125 4.125 4 C -0.104 4.104 5 C 0.066 3.934 6 N -0.545 5.545 7 C 0.066 3.934 8 C -0.111 4.111 9 C -0.103 4.103 10 C 0.053 3.947 11 H -0.005 1.005 12 C -0.538 4.538 13 H 0.050 0.950 14 C 0.014 3.986 15 N -0.916 5.916 16 Si 0.955 3.045 17 H -0.275 1.275 18 H -0.282 1.282 19 H -0.268 1.268 20 C 0.082 3.918 21 C -0.127 4.127 22 H 0.066 0.934 23 H 0.060 0.940 24 H 0.050 0.950 25 H 0.081 0.919 26 H 0.074 0.926 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.028 0.972 30 H 0.068 0.932 31 H 0.022 0.978 32 H 0.089 0.911 33 H 0.049 0.951 34 H 0.069 0.931 35 H 0.057 0.943 36 H 0.021 0.979 37 H 0.260 0.740 38 H 0.054 0.946 39 H 0.012 0.988 40 H 0.073 0.927 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.005 -1.097 -16.017 17.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.129 4.129 3 C -0.163 4.163 4 C -0.123 4.123 5 C -0.062 4.062 6 N -0.270 5.270 7 C -0.061 4.061 8 C -0.148 4.148 9 C -0.142 4.142 10 C 0.034 3.966 11 H 0.014 0.986 12 C -0.577 4.577 13 H 0.069 0.931 14 C -0.185 4.185 15 N -0.555 5.555 16 Si 0.781 3.219 17 H -0.201 1.201 18 H -0.208 1.208 19 H -0.193 1.193 20 C -0.046 4.046 21 C -0.165 4.165 22 H 0.085 0.915 23 H 0.079 0.921 24 H 0.069 0.931 25 H 0.099 0.901 26 H 0.092 0.908 27 H 0.101 0.899 28 H 0.106 0.894 29 H 0.046 0.954 30 H 0.086 0.914 31 H 0.040 0.960 32 H 0.107 0.893 33 H 0.068 0.932 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.040 0.960 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.030 0.970 40 H 0.091 0.909 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.193 -1.602 -15.702 17.345 hybrid contribution 1.230 0.999 0.838 1.792 sum -5.963 -0.604 -14.864 16.027 Atomic orbital electron populations 1.21591 0.93384 1.02085 1.01989 1.22296 0.96236 0.97284 0.97088 1.23000 1.01463 0.97377 0.94490 1.22561 0.97528 0.96621 0.95552 1.22158 0.98651 0.98804 0.86545 1.61920 1.06305 1.52260 1.06503 1.22049 0.94805 0.93272 0.95999 1.21587 0.97660 1.00800 0.94787 1.21455 0.94996 0.97046 1.00667 1.18581 0.93713 0.94259 0.90040 0.98633 1.21531 0.98478 1.45435 0.92212 0.93142 1.25727 0.99312 0.95052 0.98371 1.70041 1.30306 1.48339 1.06812 0.85604 0.80151 0.78215 0.77969 1.20114 1.20799 1.19299 1.21967 0.90467 0.96610 0.95562 1.22952 1.00732 0.95780 0.97005 0.91467 0.92098 0.93109 0.90097 0.90765 0.89863 0.89363 0.95390 0.91387 0.95983 0.89325 0.93172 0.91273 0.92421 0.96029 0.93051 0.92783 0.96987 0.90861 0.92549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.15 9.59 71.98 0.69 -1.46 16 2 C -0.11 -2.01 4.55 -10.27 -0.05 -2.06 16 3 C -0.13 -2.35 7.23 31.12 0.23 -2.13 16 4 C -0.10 -2.49 3.36 -10.27 -0.03 -2.53 16 5 C 0.07 1.95 4.80 86.30 0.41 2.36 16 6 N -0.55 -20.26 4.66 -896.37 -4.17 -24.43 16 7 C 0.07 2.30 5.31 86.33 0.46 2.76 16 8 C -0.11 -4.38 6.09 30.65 0.19 -4.20 16 9 C -0.10 -5.12 5.03 30.67 0.15 -4.97 16 10 C 0.05 2.79 2.26 -11.49 -0.03 2.76 16 11 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 12 C -0.54 -30.67 8.56 25.60 0.22 -30.46 16 13 H 0.05 2.82 7.74 -2.91 -0.02 2.80 16 14 C 0.01 0.80 5.30 84.66 0.45 1.25 16 15 N -0.92 -54.21 11.36 21.45 0.24 -53.96 16 16 Si 0.96 44.43 29.54 68.60 2.03 46.45 16 17 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 18 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 19 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 20 C 0.08 3.61 4.68 86.33 0.40 4.01 16 21 C -0.13 -2.97 7.19 31.12 0.22 -2.74 16 22 H 0.07 0.91 8.14 -2.39 -0.02 0.90 16 23 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 24 H 0.05 0.89 7.34 -2.39 -0.02 0.87 16 25 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.07 1.25 8.10 -2.39 -0.02 1.23 16 27 H 0.08 1.50 8.10 -2.39 -0.02 1.48 16 28 H 0.09 2.16 5.68 -2.38 -0.01 2.15 16 29 H 0.03 0.81 8.12 -2.39 -0.02 0.79 16 30 H 0.07 2.01 7.69 -2.39 -0.02 1.99 16 31 H 0.02 0.76 8.14 -2.38 -0.02 0.75 16 32 H 0.09 2.58 6.08 -2.39 -0.01 2.56 16 33 H 0.05 2.08 8.14 -2.38 -0.02 2.06 16 34 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 35 H 0.06 3.21 6.17 -2.39 -0.01 3.20 16 36 H 0.02 1.05 8.14 -2.38 -0.02 1.03 16 37 H 0.26 14.62 8.31 -92.70 -0.77 13.85 16 38 H 0.05 2.38 8.02 -2.39 -0.02 2.36 16 39 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 40 H 0.07 1.78 7.90 -2.39 -0.02 1.76 16 41 H 0.06 1.42 8.10 -2.39 -0.02 1.40 16 Total: -1.00 -61.06 311.45 2.37 -58.69 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: 0.96 Total: 10.64 kcal Atomic # 6 Polarization: -40.71 SS G_CDS: 3.32 Total: -37.39 kcal Atomic # 7 Polarization: -74.46 SS G_CDS: -3.93 Total: -78.39 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.45 kcal Total: -61.06 2.37 -58.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930922679.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.802 kcal (2) G-P(sol) polarization free energy of solvation -61.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds