Wall clock time and date at job start Sun Mar 29 2020 22:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.53008 * 109.46820 * 2 1 4 4 C 1.52997 * 109.46935 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47067 * 182.55075 * 4 3 2 6 6 N 1.46899 * 115.54765 * 297.67706 * 5 4 3 7 7 C 1.46906 * 110.99923 * 279.51727 * 6 5 4 8 8 C 1.53007 * 109.46802 * 182.19290 * 7 6 5 9 9 C 1.50697 * 115.55198 * 304.12096 * 8 7 6 10 10 H 1.07998 * 119.99560 * 99.69678 * 9 8 7 11 11 C 1.37870 * 120.00114 * 279.42361 * 9 8 7 12 12 N 1.31515 * 120.00438 * 358.41128 * 11 9 8 13 13 Si 1.86808 * 119.99856 * 178.41081 * 11 9 8 14 14 H 1.48494 * 109.47047 * 359.97438 * 13 11 9 15 15 H 1.48504 * 109.46937 * 120.00155 * 13 11 9 16 16 H 1.48505 * 109.46804 * 239.99792 * 13 11 9 17 17 C 1.52997 * 117.51649 * 89.83033 * 8 7 6 18 18 C 1.52992 * 60.00272 * 107.47677 * 17 8 7 19 19 C 1.52996 * 117.51841 * 83.37820 * 5 4 3 20 20 C 1.52994 * 117.49902 * 152.00873 * 5 4 3 21 21 H 1.09000 * 109.46620 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.46604 * 300.00073 * 1 2 3 23 23 H 1.08996 * 109.47010 * 60.00145 * 1 2 3 24 24 H 1.08993 * 109.46803 * 240.00372 * 2 1 3 25 25 H 1.08996 * 109.47010 * 119.99855 * 2 1 3 26 26 H 1.08996 * 109.46987 * 59.99815 * 3 2 1 27 27 H 1.09002 * 109.46550 * 299.99647 * 3 2 1 28 28 H 1.09004 * 109.47351 * 62.54624 * 4 3 2 29 29 H 1.08999 * 109.47207 * 302.54892 * 4 3 2 30 30 H 1.00901 * 111.00480 * 43.47243 * 6 5 4 31 31 H 1.09003 * 109.46748 * 62.19812 * 7 6 5 32 32 H 1.08993 * 109.47200 * 302.19060 * 7 6 5 33 33 H 0.96999 * 120.00221 * 185.04860 * 12 11 9 34 34 H 1.09000 * 117.49690 * 214.96898 * 17 8 7 35 35 H 1.09001 * 117.49850 * 359.97438 * 17 8 7 36 36 H 1.09010 * 117.49771 * 252.51042 * 18 17 8 37 37 H 1.08994 * 117.50270 * 107.48931 * 18 17 8 38 38 H 1.09000 * 117.49521 * 214.97033 * 19 5 4 39 39 H 1.08997 * 117.49734 * 359.97438 * 19 5 4 40 40 H 1.09002 * 117.50348 * 359.97438 * 20 5 4 41 41 H 1.08996 * 117.50021 * 144.99569 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0800 2.8837 0.0636 6 7 3.7103 3.7378 -1.0730 7 6 4.5958 3.4994 -2.2207 8 6 4.2153 4.4434 -3.3631 9 6 2.7790 4.3728 -3.8136 10 1 2.0685 5.1100 -3.4700 11 6 2.3731 3.3703 -4.6687 12 7 3.2459 2.4942 -5.1162 13 14 0.5834 3.2566 -5.1919 14 1 -0.1894 4.3523 -4.5537 15 1 0.4907 3.3799 -6.6689 16 1 0.0263 1.9467 -4.7686 17 6 4.9046 5.8084 -3.4115 18 6 5.2765 4.7272 -4.4281 19 6 4.1687 3.5414 1.4421 20 6 5.4456 3.1216 0.7112 21 1 -0.3632 -1.0277 -0.0005 22 1 -0.3632 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.6767 1.9564 0.8899 27 1 1.6767 1.9563 -0.8901 28 1 3.9330 0.9690 -0.9128 29 1 3.9337 0.8896 0.8654 30 1 2.7435 3.6021 -1.3279 31 1 4.4903 2.4664 -2.5525 32 1 5.6291 3.6829 -1.9266 33 1 2.9769 1.8341 -5.7740 34 1 4.3192 6.6554 -3.7691 35 1 5.6291 6.0343 -2.6291 36 1 6.2459 4.2417 -4.3146 37 1 4.9358 4.8628 -5.4545 38 1 3.9527 4.6079 1.5056 39 1 3.8633 2.9476 2.3036 40 1 5.9805 2.2516 1.0919 41 1 6.0696 3.9119 0.2940 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000934201495.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:41 Heat of formation + Delta-G solvation = 22.102169 kcal Electronic energy + Delta-G solvation = -17606.454681 eV Core-core repulsion = 15100.762328 eV Total energy + Delta-G solvation = -2505.692352 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.42493 -36.36002 -34.69937 -31.92444 -31.64521 -29.55672 -25.63790 -24.48546 -23.78854 -22.01739 -20.95190 -20.78239 -18.97200 -18.59473 -15.89636 -15.63783 -15.21556 -14.60528 -14.27471 -14.03858 -13.57219 -13.49616 -12.83445 -12.65327 -12.45554 -11.88652 -11.71334 -11.39600 -11.13477 -11.05248 -11.02163 -10.97684 -10.83493 -10.70962 -10.41264 -10.25421 -10.09030 -9.92972 -9.38139 -9.14392 -8.77512 -8.40429 -8.05793 -7.38372 -6.00308 -4.06790 3.26851 3.36262 3.40353 4.18002 4.41035 4.81226 4.92879 5.16161 5.26408 5.28711 5.36884 5.45550 5.48426 5.55912 5.83875 5.89060 5.96903 5.98139 6.01418 6.15567 6.19120 6.24343 6.26568 6.34673 6.39096 6.50820 6.56250 6.62331 6.63807 6.68391 6.87708 6.91560 7.02895 7.21136 7.54316 7.59538 7.90724 8.12223 8.41938 8.53492 8.97010 9.58677 11.07344 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.015357 B = 0.010430 C = 0.006847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.795855 B = 2684.035571 C = 4088.437146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.117 4.117 4 C -0.105 4.105 5 C 0.046 3.954 6 N -0.644 5.644 7 C 0.111 3.889 8 C 0.050 3.950 9 C -0.488 4.488 10 H 0.060 0.940 11 C 0.070 3.930 12 N -0.879 5.879 13 Si 0.882 3.118 14 H -0.272 1.272 15 H -0.285 1.285 16 H -0.284 1.284 17 C -0.204 4.204 18 C -0.163 4.163 19 C -0.165 4.165 20 C -0.173 4.173 21 H 0.049 0.951 22 H 0.051 0.949 23 H 0.056 0.944 24 H 0.060 0.940 25 H 0.055 0.945 26 H 0.060 0.940 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.057 0.943 30 H 0.354 0.646 31 H 0.033 0.967 32 H 0.037 0.963 33 H 0.258 0.742 34 H 0.072 0.928 35 H 0.063 0.937 36 H 0.058 0.942 37 H 0.079 0.921 38 H 0.095 0.905 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.255 -3.218 10.167 10.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.154 4.154 4 C -0.145 4.145 5 C -0.047 4.047 6 N -0.276 5.276 7 C -0.018 4.018 8 C 0.049 3.951 9 C -0.526 4.526 10 H 0.078 0.922 11 C -0.132 4.132 12 N -0.516 5.516 13 Si 0.710 3.290 14 H -0.196 1.196 15 H -0.211 1.211 16 H -0.210 1.210 17 C -0.241 4.241 18 C -0.201 4.201 19 C -0.203 4.203 20 C -0.210 4.210 21 H 0.068 0.932 22 H 0.070 0.930 23 H 0.075 0.925 24 H 0.079 0.921 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.175 0.825 31 H 0.051 0.949 32 H 0.055 0.945 33 H 0.068 0.932 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.097 0.903 38 H 0.114 0.886 39 H 0.103 0.897 40 H 0.104 0.896 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.090 -2.872 10.300 10.693 hybrid contribution -1.160 -1.009 -0.835 1.750 sum -1.070 -3.881 9.465 10.286 Atomic orbital electron populations 1.21773 0.96184 1.01092 1.01901 1.21510 0.95655 0.97334 1.01510 1.21528 0.95126 0.96317 1.02446 1.21557 0.95791 0.95382 1.01740 1.21484 0.99430 0.91500 0.92289 1.60357 1.08718 1.52460 1.06053 1.21334 0.93200 0.98324 0.88912 1.18789 0.92931 0.90646 0.92744 1.20497 0.92517 1.11205 1.28411 0.92176 1.24977 0.96880 0.95259 0.96117 1.70008 1.33791 1.18085 1.29717 0.86688 0.85915 0.77964 0.78433 1.19613 1.21128 1.21048 1.22881 1.04514 0.94473 1.02229 1.22519 0.98824 1.02751 0.95986 1.23005 1.01438 1.01304 0.94546 1.22971 0.90900 1.02857 1.04303 0.93226 0.92955 0.92514 0.92106 0.92623 0.92148 0.91267 0.91560 0.92412 0.82486 0.94857 0.94504 0.93242 0.90918 0.91857 0.92298 0.90286 0.88642 0.89731 0.89649 0.88772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.91 37.16 0.37 -1.52 16 2 C -0.12 -1.64 5.94 -26.72 -0.16 -1.80 16 3 C -0.12 -1.75 4.97 -26.73 -0.13 -1.88 16 4 C -0.11 -1.64 5.22 -26.73 -0.14 -1.78 16 5 C 0.05 0.76 1.73 -131.61 -0.23 0.54 16 6 N -0.64 -12.98 6.58 -99.96 -0.66 -13.64 16 7 C 0.11 2.50 5.47 -3.82 -0.02 2.48 16 8 C 0.05 1.22 1.61 -155.66 -0.25 0.97 16 9 C -0.49 -12.99 7.90 -34.44 -0.27 -13.26 16 10 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 11 C 0.07 1.89 5.44 -17.82 -0.10 1.79 16 12 N -0.88 -24.48 12.92 55.43 0.72 -23.77 16 13 Si 0.88 20.79 29.54 -169.99 -5.02 15.77 16 14 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 15 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 16 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 17 C -0.20 -4.62 9.93 -26.74 -0.27 -4.88 16 18 C -0.16 -3.91 9.51 -26.73 -0.25 -4.16 16 19 C -0.17 -2.39 10.18 -26.73 -0.27 -2.66 16 20 C -0.17 -2.61 9.55 -26.74 -0.26 -2.87 16 21 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 22 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 24 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 27 H 0.07 1.21 6.96 -51.93 -0.36 0.84 16 28 H 0.07 1.16 7.73 -51.93 -0.40 0.76 16 29 H 0.06 0.79 8.11 -51.93 -0.42 0.37 16 30 H 0.35 7.59 6.45 -39.29 -0.25 7.33 16 31 H 0.03 0.83 7.72 -51.93 -0.40 0.43 16 32 H 0.04 0.80 7.35 -51.93 -0.38 0.42 16 33 H 0.26 6.92 8.32 -40.82 -0.34 6.58 16 34 H 0.07 1.64 8.14 -51.93 -0.42 1.22 16 35 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 36 H 0.06 1.34 8.14 -51.92 -0.42 0.92 16 37 H 0.08 2.01 8.14 -51.93 -0.42 1.59 16 38 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 39 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 40 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.09 1.51 7.83 -51.93 -0.41 1.10 16 LS Contribution 331.84 15.07 5.00 5.00 Total: -1.00 -26.83 331.84 -9.61 -36.44 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: -7.67 Total: 9.24 kcal Atomic # 6 Polarization: -27.07 SS G_CDS: -1.98 Total: -29.05 kcal Atomic # 7 Polarization: -37.46 SS G_CDS: 0.06 Total: -37.40 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -26.83 -9.61 -36.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934201495.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.540 kcal (2) G-P(sol) polarization free energy of solvation -26.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds