Wall clock time and date at job start Sun Mar 29 2020 22:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.53008 * 109.46820 * 2 1 4 4 C 1.52997 * 109.46935 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47067 * 182.55075 * 4 3 2 6 6 N 1.46899 * 115.54765 * 297.67706 * 5 4 3 7 7 C 1.46906 * 110.99923 * 279.51727 * 6 5 4 8 8 C 1.53007 * 109.46802 * 182.19290 * 7 6 5 9 9 C 1.50697 * 115.55198 * 304.12096 * 8 7 6 10 10 H 1.07998 * 119.99560 * 99.69678 * 9 8 7 11 11 C 1.37870 * 120.00114 * 279.42361 * 9 8 7 12 12 N 1.31515 * 120.00438 * 358.41128 * 11 9 8 13 13 Si 1.86808 * 119.99856 * 178.41081 * 11 9 8 14 14 H 1.48494 * 109.47047 * 359.97438 * 13 11 9 15 15 H 1.48504 * 109.46937 * 120.00155 * 13 11 9 16 16 H 1.48505 * 109.46804 * 239.99792 * 13 11 9 17 17 C 1.52997 * 117.51649 * 89.83033 * 8 7 6 18 18 C 1.52992 * 60.00272 * 107.47677 * 17 8 7 19 19 C 1.52996 * 117.51841 * 83.37820 * 5 4 3 20 20 C 1.52994 * 117.49902 * 152.00873 * 5 4 3 21 21 H 1.09000 * 109.46620 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.46604 * 300.00073 * 1 2 3 23 23 H 1.08996 * 109.47010 * 60.00145 * 1 2 3 24 24 H 1.08993 * 109.46803 * 240.00372 * 2 1 3 25 25 H 1.08996 * 109.47010 * 119.99855 * 2 1 3 26 26 H 1.08996 * 109.46987 * 59.99815 * 3 2 1 27 27 H 1.09002 * 109.46550 * 299.99647 * 3 2 1 28 28 H 1.09004 * 109.47351 * 62.54624 * 4 3 2 29 29 H 1.08999 * 109.47207 * 302.54892 * 4 3 2 30 30 H 1.00901 * 111.00480 * 43.47243 * 6 5 4 31 31 H 1.09003 * 109.46748 * 62.19812 * 7 6 5 32 32 H 1.08993 * 109.47200 * 302.19060 * 7 6 5 33 33 H 0.96999 * 120.00221 * 185.04860 * 12 11 9 34 34 H 1.09000 * 117.49690 * 214.96898 * 17 8 7 35 35 H 1.09001 * 117.49850 * 359.97438 * 17 8 7 36 36 H 1.09010 * 117.49771 * 252.51042 * 18 17 8 37 37 H 1.08994 * 117.50270 * 107.48931 * 18 17 8 38 38 H 1.09000 * 117.49521 * 214.97033 * 19 5 4 39 39 H 1.08997 * 117.49734 * 359.97438 * 19 5 4 40 40 H 1.09002 * 117.50348 * 359.97438 * 20 5 4 41 41 H 1.08996 * 117.50021 * 144.99569 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0800 2.8837 0.0636 6 7 3.7103 3.7378 -1.0730 7 6 4.5958 3.4994 -2.2207 8 6 4.2153 4.4434 -3.3631 9 6 2.7790 4.3728 -3.8136 10 1 2.0685 5.1100 -3.4700 11 6 2.3731 3.3703 -4.6687 12 7 3.2459 2.4942 -5.1162 13 14 0.5834 3.2566 -5.1919 14 1 -0.1894 4.3523 -4.5537 15 1 0.4907 3.3799 -6.6689 16 1 0.0263 1.9467 -4.7686 17 6 4.9046 5.8084 -3.4115 18 6 5.2765 4.7272 -4.4281 19 6 4.1687 3.5414 1.4421 20 6 5.4456 3.1216 0.7112 21 1 -0.3632 -1.0277 -0.0005 22 1 -0.3632 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.6767 1.9564 0.8899 27 1 1.6767 1.9563 -0.8901 28 1 3.9330 0.9690 -0.9128 29 1 3.9337 0.8896 0.8654 30 1 2.7435 3.6021 -1.3279 31 1 4.4903 2.4664 -2.5525 32 1 5.6291 3.6829 -1.9266 33 1 2.9769 1.8341 -5.7740 34 1 4.3192 6.6554 -3.7691 35 1 5.6291 6.0343 -2.6291 36 1 6.2459 4.2417 -4.3146 37 1 4.9358 4.8628 -5.4545 38 1 3.9527 4.6079 1.5056 39 1 3.8633 2.9476 2.3036 40 1 5.9805 2.2516 1.0919 41 1 6.0696 3.9119 0.2940 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000934201495.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:41 Heat of formation + Delta-G solvation = 8.848242 kcal Electronic energy + Delta-G solvation = -17607.029414 eV Core-core repulsion = 15100.762328 eV Total energy + Delta-G solvation = -2506.267086 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.81189 -38.15711 -35.83869 -33.98768 -33.22143 -30.71132 -27.66180 -26.16212 -25.02399 -23.21805 -22.84883 -21.91873 -20.91329 -19.93733 -17.88611 -16.97169 -16.62936 -16.45025 -15.80071 -15.57998 -15.14151 -14.69701 -14.33777 -14.08602 -13.84516 -13.42515 -13.33057 -12.96733 -12.91500 -12.85460 -12.36421 -12.26584 -12.19638 -12.15958 -11.99861 -11.83599 -11.44290 -11.37381 -11.04671 -10.77554 -10.53306 -10.34252 -9.94207 -9.02994 -8.07668 -6.18939 1.37068 1.41336 1.51116 2.42289 2.93517 3.19570 3.32758 3.69341 3.75139 4.00663 4.09945 4.23822 4.31662 4.35263 4.40256 4.56776 4.68510 4.74699 4.74852 4.79811 4.84897 4.91202 4.94417 5.00736 5.05959 5.08262 5.12637 5.13527 5.24511 5.27860 5.30926 5.41518 5.45364 5.47713 5.65177 5.66750 5.82492 6.42496 6.53671 6.74300 6.90421 7.48898 8.99559 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.015357 B = 0.010430 C = 0.006847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.795855 B = 2684.035571 C = 4088.437146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C -0.112 4.112 4 C -0.097 4.097 5 C 0.016 3.984 6 N -0.645 5.645 7 C 0.130 3.870 8 C 0.024 3.976 9 C -0.495 4.495 10 H 0.050 0.950 11 C 0.029 3.971 12 N -0.906 5.906 13 Si 0.939 3.061 14 H -0.267 1.267 15 H -0.284 1.284 16 H -0.283 1.283 17 C -0.182 4.182 18 C -0.168 4.168 19 C -0.142 4.142 20 C -0.169 4.169 21 H 0.064 0.936 22 H 0.065 0.935 23 H 0.037 0.963 24 H 0.043 0.957 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.035 0.965 28 H 0.036 0.964 29 H 0.084 0.916 30 H 0.343 0.657 31 H -0.001 1.001 32 H 0.043 0.957 33 H 0.257 0.743 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.068 0.932 37 H 0.057 0.943 38 H 0.090 0.910 39 H 0.112 0.888 40 H 0.107 0.893 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.518 -3.354 12.261 12.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C -0.149 4.149 4 C -0.136 4.136 5 C -0.076 4.076 6 N -0.276 5.276 7 C 0.001 3.999 8 C 0.024 3.976 9 C -0.533 4.533 10 H 0.068 0.932 11 C -0.171 4.171 12 N -0.544 5.544 13 Si 0.766 3.234 14 H -0.191 1.191 15 H -0.210 1.210 16 H -0.209 1.209 17 C -0.219 4.219 18 C -0.206 4.206 19 C -0.180 4.180 20 C -0.206 4.206 21 H 0.083 0.917 22 H 0.084 0.916 23 H 0.056 0.944 24 H 0.062 0.938 25 H 0.096 0.904 26 H 0.093 0.907 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.103 0.897 30 H 0.163 0.837 31 H 0.017 0.983 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.091 0.909 35 H 0.102 0.898 36 H 0.087 0.913 37 H 0.076 0.924 38 H 0.109 0.891 39 H 0.131 0.869 40 H 0.125 0.875 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.169 -2.995 12.407 12.765 hybrid contribution -1.049 -0.936 -1.453 2.022 sum -1.217 -3.931 10.954 11.702 Atomic orbital electron populations 1.21769 0.95402 1.02027 1.01652 1.21501 0.96371 0.96179 1.01756 1.21478 0.94826 0.97219 1.01417 1.21469 0.96029 0.94748 1.01371 1.21681 1.01644 0.91993 0.92307 1.60335 1.07581 1.53709 1.05936 1.21010 0.93944 0.95696 0.89227 1.18973 0.92313 0.92579 0.93749 1.20651 0.93515 1.10880 1.28304 0.93158 1.25572 1.00194 0.95004 0.96297 1.70111 1.35392 1.18638 1.30279 0.85792 0.81856 0.77938 0.77859 1.19082 1.21047 1.20852 1.22862 1.03954 0.93438 1.01674 1.22430 0.99123 1.04044 0.95008 1.23060 1.00039 1.01275 0.93626 1.23053 0.90517 1.03343 1.03694 0.91733 0.91574 0.94381 0.93810 0.90357 0.90667 0.94665 0.94546 0.89704 0.83747 0.98263 0.93835 0.93404 0.90934 0.89768 0.91319 0.92426 0.89100 0.86949 0.87521 0.89845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.54 9.91 71.99 0.71 -2.83 16 2 C -0.12 -3.08 5.94 30.60 0.18 -2.89 16 3 C -0.11 -3.26 4.97 30.60 0.15 -3.11 16 4 C -0.10 -2.92 5.22 30.59 0.16 -2.76 16 5 C 0.02 0.51 1.73 3.52 0.01 0.52 16 6 N -0.65 -26.02 6.58 -470.18 -3.09 -29.12 16 7 C 0.13 5.96 5.47 86.30 0.47 6.43 16 8 C 0.02 1.22 1.61 -52.93 -0.09 1.13 16 9 C -0.50 -26.81 7.90 25.60 0.20 -26.61 16 10 H 0.05 2.76 7.81 -2.91 -0.02 2.74 16 11 C 0.03 1.60 5.44 84.65 0.46 2.07 16 12 N -0.91 -51.71 12.92 21.44 0.28 -51.44 16 13 Si 0.94 43.40 29.54 68.60 2.03 45.42 16 14 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 15 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 16 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 17 C -0.18 -8.12 9.93 30.59 0.30 -7.82 16 18 C -0.17 -8.13 9.51 30.59 0.29 -7.84 16 19 C -0.14 -3.69 10.18 30.59 0.31 -3.38 16 20 C -0.17 -4.69 9.55 30.59 0.29 -4.40 16 21 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 22 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 23 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 24 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 26 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.03 1.25 6.96 -2.39 -0.02 1.24 16 28 H 0.04 1.30 7.73 -2.38 -0.02 1.28 16 29 H 0.08 2.08 8.11 -2.39 -0.02 2.06 16 30 H 0.34 15.03 6.45 -89.69 -0.58 14.45 16 31 H 0.00 -0.04 7.72 -2.39 -0.02 -0.06 16 32 H 0.04 1.89 7.35 -2.39 -0.02 1.87 16 33 H 0.26 14.11 8.32 -92.71 -0.77 13.34 16 34 H 0.07 3.21 8.14 -2.39 -0.02 3.19 16 35 H 0.08 3.39 8.14 -2.39 -0.02 3.37 16 36 H 0.07 3.13 8.14 -2.38 -0.02 3.11 16 37 H 0.06 3.00 8.14 -2.39 -0.02 2.98 16 38 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 39 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 40 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 41 H 0.08 2.51 7.83 -2.39 -0.02 2.49 16 Total: -1.00 -57.77 331.84 3.06 -54.71 By element: Atomic # 1 Polarization: 31.52 SS G_CDS: 0.39 Total: 31.90 kcal Atomic # 6 Polarization: -54.95 SS G_CDS: 3.46 Total: -51.49 kcal Atomic # 7 Polarization: -77.74 SS G_CDS: -2.82 Total: -80.55 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.42 kcal Total: -57.77 3.06 -54.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934201495.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.559 kcal (2) G-P(sol) polarization free energy of solvation -57.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds