Wall clock time and date at job start Sun Mar 29 2020 21:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48500 * 109.46986 * 270.00107 * 3 2 1 5 5 H 1.48496 * 109.47029 * 30.00124 * 3 2 1 6 6 H 1.48499 * 109.47352 * 149.99954 * 3 2 1 7 7 C 1.37885 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99675 * 179.72276 * 7 2 1 9 9 C 1.50695 * 119.99721 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46637 * 179.97438 * 9 7 2 11 11 N 1.46907 * 109.47025 * 180.02562 * 10 9 7 12 12 C 1.46896 * 111.00276 * 179.97438 * 11 10 9 13 13 C 1.52994 * 115.55081 * 179.91041 * 12 11 10 14 14 C 1.53003 * 109.46762 * 85.58865 * 13 12 11 15 15 C 1.53008 * 109.47128 * 179.97438 * 14 13 12 16 16 C 1.53000 * 109.46980 * 59.99750 * 15 14 13 17 17 C 1.53006 * 109.47065 * 300.00233 * 16 15 14 18 18 C 1.53000 * 109.47398 * 60.00261 * 17 16 15 19 19 C 1.53006 * 117.49491 * 34.20493 * 12 11 10 20 20 C 1.52997 * 60.00064 * 252.51081 * 19 12 11 21 21 H 0.97000 * 119.99706 * 359.97438 * 1 2 3 22 22 H 1.08992 * 109.47177 * 299.99952 * 9 7 2 23 23 H 1.08997 * 109.47039 * 60.00401 * 9 7 2 24 24 H 1.09000 * 109.47266 * 299.99671 * 10 9 7 25 25 H 1.08997 * 109.46955 * 60.00501 * 10 9 7 26 26 H 1.00902 * 110.99765 * 56.04593 * 11 10 9 27 27 H 1.09000 * 109.46994 * 205.58487 * 13 12 11 28 28 H 1.09000 * 109.47058 * 299.99583 * 14 13 12 29 29 H 1.09002 * 109.47398 * 59.99826 * 14 13 12 30 30 H 1.09004 * 109.46831 * 300.00295 * 15 14 13 31 31 H 1.08999 * 109.47075 * 179.97438 * 15 14 13 32 32 H 1.08994 * 109.46964 * 180.02562 * 16 15 14 33 33 H 1.08998 * 109.46898 * 59.99878 * 16 15 14 34 34 H 1.08998 * 109.46973 * 299.99600 * 17 16 15 35 35 H 1.09002 * 109.47069 * 180.02562 * 17 16 15 36 36 H 1.08999 * 109.47061 * 179.97438 * 18 17 16 37 37 H 1.09004 * 109.47025 * 59.99365 * 18 17 16 38 38 H 1.09005 * 117.49998 * 0.02562 * 19 12 11 39 39 H 1.09003 * 117.49449 * 145.01981 * 19 12 11 40 40 H 1.08999 * 117.49724 * 252.51293 * 20 19 12 41 41 H 1.08996 * 117.51798 * 107.48096 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 -0.0040 9 6 1.2510 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 7 1.5108 -4.9343 -0.0001 12 6 2.4353 -6.0759 -0.0007 13 6 1.7778 -7.4574 0.0008 14 6 1.4567 -7.8708 -1.4369 15 6 0.7997 -9.2527 -1.4356 16 6 -0.4929 -9.2021 -0.6186 17 6 -0.1717 -8.7886 0.8191 18 6 0.4852 -7.4068 0.8178 19 6 3.7522 -5.9189 0.7623 20 6 3.7500 -5.9200 -0.7677 21 1 -0.4850 0.8401 0.0004 22 1 0.6241 -2.5567 0.8902 23 1 0.6248 -2.5571 -0.8897 24 1 2.8720 -3.6043 -0.8895 25 1 2.8719 -3.6043 0.8905 26 1 0.8747 -4.9842 -0.7817 27 1 2.4592 -8.1836 0.4440 28 1 0.7753 -7.1447 -1.8802 29 1 2.3776 -7.9073 -2.0189 30 1 1.4815 -9.9786 -0.9924 31 1 0.5705 -9.5470 -2.4598 32 1 -0.9606 -10.1865 -0.6173 33 1 -1.1745 -8.4761 -1.0617 34 1 0.5100 -9.5146 1.2622 35 1 -1.0925 -8.7530 1.4013 36 1 0.7136 -7.1121 1.8420 37 1 -0.1965 -6.6808 0.3745 38 1 3.9324 -4.9687 1.2650 39 1 4.1503 -6.8000 1.2656 40 1 4.1466 -6.8017 -1.2709 41 1 3.9287 -4.9704 -1.2722 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000934790325.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:55 Heat of formation + Delta-G solvation = -9.145782 kcal Electronic energy + Delta-G solvation = -17280.828315 eV Core-core repulsion = 14773.780950 eV Total energy + Delta-G solvation = -2507.047365 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.56779 -37.03567 -33.78482 -31.99107 -30.69770 -30.45540 -28.46575 -24.41101 -22.97005 -22.77106 -21.75065 -20.52413 -19.82828 -18.73600 -16.38548 -15.91446 -14.98609 -14.84246 -14.36963 -14.13505 -14.08166 -13.94689 -13.18437 -12.69858 -12.55050 -12.23548 -12.10520 -11.80571 -11.34934 -11.21491 -11.04008 -10.97635 -10.87928 -10.66840 -10.58782 -10.44428 -10.28296 -10.02700 -9.69181 -9.55848 -9.34709 -9.12662 -8.34144 -7.58916 -5.99183 -4.01664 3.32369 3.38600 3.42059 4.04138 4.43375 4.62049 4.69685 4.81477 4.86206 5.06234 5.18928 5.22562 5.36865 5.42526 5.51225 5.56016 5.60115 5.68147 5.69075 5.76952 5.84863 6.03708 6.06002 6.12985 6.17925 6.23344 6.26197 6.31861 6.40488 6.45911 6.50649 6.57073 6.68757 7.01505 7.52092 7.73825 7.84589 7.97760 8.09303 8.44369 9.05464 9.62087 11.12257 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.037348 B = 0.004866 C = 0.004569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.517890 B = 5753.116411 C = 6127.154773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.053 0.947 9 C 0.026 3.974 10 C 0.059 3.941 11 N -0.646 5.646 12 C 0.065 3.935 13 C -0.038 4.038 14 C -0.114 4.114 15 C -0.117 4.117 16 C -0.120 4.120 17 C -0.121 4.121 18 C -0.101 4.101 19 C -0.175 4.175 20 C -0.227 4.227 21 H 0.260 0.740 22 H 0.025 0.975 23 H 0.013 0.987 24 H 0.020 0.980 25 H 0.062 0.938 26 H 0.338 0.662 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.062 0.938 34 H 0.055 0.945 35 H 0.059 0.941 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.099 0.901 39 H 0.089 0.911 40 H 0.086 0.914 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.344 -18.173 -1.287 18.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.069 4.069 11 N -0.275 5.275 12 C -0.028 4.028 13 C -0.057 4.057 14 C -0.152 4.152 15 C -0.155 4.155 16 C -0.158 4.158 17 C -0.159 4.159 18 C -0.139 4.139 19 C -0.213 4.213 20 C -0.266 4.266 21 H 0.070 0.930 22 H 0.043 0.957 23 H 0.031 0.969 24 H 0.038 0.962 25 H 0.080 0.920 26 H 0.158 0.842 27 H 0.086 0.914 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.092 0.908 38 H 0.117 0.883 39 H 0.107 0.893 40 H 0.104 0.896 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 2.071 -18.040 -0.595 18.168 hybrid contribution 0.928 1.080 -0.935 1.704 sum 3.000 -16.960 -1.530 17.291 Atomic orbital electron populations 1.69973 1.06026 1.26569 1.50660 1.24996 0.94829 0.99182 0.95297 0.86595 0.79859 0.83498 0.78052 1.20718 1.21176 1.19889 1.21162 0.92936 0.91006 1.50866 0.92834 1.19057 0.94006 0.90414 0.97660 1.22323 0.97351 0.88291 0.98903 1.60430 1.18047 1.00809 1.48243 1.21698 0.85887 0.92630 1.02606 1.20612 0.96945 0.92566 0.95616 1.21598 1.00417 0.96615 0.96567 1.21521 0.97040 0.97282 0.99636 1.21545 0.97410 1.00835 0.95966 1.21591 1.00331 0.97685 0.96288 1.21381 0.96079 0.95996 1.00442 1.23213 1.00646 1.03181 0.94251 1.23577 1.05343 1.03027 0.94693 0.93002 0.95658 0.96905 0.96168 0.91998 0.84243 0.91394 0.91804 0.92227 0.92373 0.92367 0.92621 0.91881 0.92607 0.92221 0.91748 0.90811 0.88275 0.89274 0.89551 0.88505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.09 13.29 55.43 0.74 -26.35 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.84 29.54 -169.99 -5.02 16.81 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.52 -14.91 9.11 -34.44 -0.31 -15.22 16 8 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 9 C 0.03 0.69 5.23 -27.88 -0.15 0.54 16 10 C 0.06 1.25 4.74 -3.82 -0.02 1.24 16 11 N -0.65 -11.57 5.56 -99.96 -0.56 -12.12 16 12 C 0.06 0.96 2.35 -131.60 -0.31 0.65 16 13 C -0.04 -0.47 2.32 -90.62 -0.21 -0.68 16 14 C -0.11 -1.28 5.05 -26.73 -0.13 -1.42 16 15 C -0.12 -1.13 5.92 -26.73 -0.16 -1.29 16 16 C -0.12 -1.17 5.92 -26.73 -0.16 -1.32 16 17 C -0.12 -1.26 5.92 -26.73 -0.16 -1.42 16 18 C -0.10 -1.28 4.78 -26.73 -0.13 -1.41 16 19 C -0.18 -2.57 9.50 -26.73 -0.25 -2.82 16 20 C -0.23 -3.26 9.06 -26.73 -0.24 -3.50 16 21 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 22 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 23 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 24 H 0.02 0.43 6.20 -51.93 -0.32 0.11 16 25 H 0.06 1.34 6.21 -51.93 -0.32 1.01 16 26 H 0.34 5.94 8.68 -39.29 -0.34 5.60 16 27 H 0.07 0.80 7.90 -51.93 -0.41 0.39 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.06 0.66 7.29 -51.93 -0.38 0.28 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.07 1.04 7.45 -51.93 -0.39 0.65 16 38 H 0.10 1.61 6.21 -51.93 -0.32 1.29 16 39 H 0.09 1.13 8.05 -51.93 -0.42 0.71 16 40 H 0.09 1.09 7.61 -51.93 -0.40 0.70 16 41 H 0.10 1.55 6.21 -51.93 -0.32 1.23 16 LS Contribution 314.34 15.07 4.74 4.74 Total: -1.00 -29.28 314.34 -9.82 -39.10 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -7.39 Total: 2.90 kcal Atomic # 6 Polarization: -22.74 SS G_CDS: -2.33 Total: -25.07 kcal Atomic # 7 Polarization: -38.66 SS G_CDS: 0.18 Total: -38.48 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.28 -9.82 -39.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934790325.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.952 kcal (2) G-P(sol) polarization free energy of solvation -29.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds