Wall clock time and date at job start Sun Mar 29 2020 22:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 115.52711 * 2 1 4 4 C 1.55465 * 118.05967 * 214.11484 * 2 1 3 5 5 H 1.09002 * 119.42287 * 141.81062 * 4 2 1 6 6 C 1.54756 * 118.33968 * 346.20821 * 4 2 1 7 7 C 1.54893 * 103.96407 * 272.82296 * 6 4 2 8 8 H 1.08999 * 110.75721 * 156.32683 * 7 6 4 9 9 N 1.46901 * 110.75266 * 279.51294 * 7 6 4 10 10 C 1.46905 * 110.99870 * 271.06311 * 9 7 6 11 11 C 1.52993 * 109.47039 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.47360 * 180.02562 * 11 10 9 13 13 C 1.50697 * 109.47387 * 179.97438 * 12 11 10 14 14 H 1.08000 * 120.00144 * 0.02562 * 13 12 11 15 15 C 1.37874 * 119.99821 * 179.97438 * 13 12 11 16 16 N 1.31507 * 120.00508 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 119.99834 * 179.97438 * 15 13 12 18 18 H 1.48494 * 109.47164 * 0.02562 * 17 15 13 19 19 H 1.48507 * 109.46812 * 120.00223 * 17 15 13 20 20 H 1.48494 * 109.47320 * 240.00038 * 17 15 13 21 21 C 1.54887 * 102.91532 * 37.91931 * 7 6 4 22 22 C 1.52998 * 117.45932 * 145.49922 * 2 1 3 23 23 H 1.09006 * 119.29671 * 219.83499 * 22 2 1 24 24 H 1.08997 * 109.46895 * 274.49825 * 1 2 3 25 25 H 1.08999 * 109.47059 * 34.50392 * 1 2 3 26 26 H 1.09001 * 109.46835 * 154.50421 * 1 2 3 27 27 H 1.09003 * 109.47062 * 205.50032 * 3 2 1 28 28 H 1.09002 * 109.47079 * 325.49763 * 3 2 1 29 29 H 1.08997 * 109.47031 * 85.49770 * 3 2 1 30 30 H 1.08997 * 110.69812 * 154.16863 * 6 4 2 31 31 H 1.09001 * 110.50244 * 31.37509 * 6 4 2 32 32 H 1.00901 * 111.00067 * 35.01486 * 9 7 6 33 33 H 1.09001 * 109.46798 * 300.00327 * 10 9 7 34 34 H 1.08998 * 109.46961 * 60.00043 * 10 9 7 35 35 H 1.09001 * 109.47393 * 299.99719 * 11 10 9 36 36 H 1.08998 * 109.47408 * 60.00073 * 11 10 9 37 37 H 1.09001 * 109.46514 * 300.00105 * 12 11 10 38 38 H 1.08998 * 109.46924 * 59.99625 * 12 11 10 39 39 H 0.96997 * 120.00792 * 179.97438 * 16 15 13 40 40 H 1.08997 * 110.48896 * 80.64314 * 21 7 6 41 41 H 1.09005 * 110.48482 * 203.28911 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1893 1.3806 0.0000 4 6 2.2613 -1.1358 -0.7694 5 1 3.1717 -0.9072 -1.3236 6 6 1.4396 -2.3698 -1.2132 7 6 1.4961 -3.3166 0.0114 8 1 0.6512 -4.0052 0.0066 9 7 2.7662 -4.0542 0.0408 10 6 2.6646 -5.3080 -0.7180 11 6 4.0032 -6.0468 -0.6640 12 6 3.8976 -7.3523 -1.4548 13 6 5.2163 -8.0797 -1.4021 14 1 6.0467 -7.6537 -0.8585 15 6 5.3625 -9.2895 -2.0470 16 7 4.3514 -9.8086 -2.7085 17 14 6.9975 -10.1909 -1.9822 18 1 7.9665 -9.4014 -1.1805 19 1 6.8041 -11.5223 -1.3535 20 1 7.5212 -10.3658 -3.3607 21 6 1.4010 -2.3393 1.2093 22 6 2.2355 -1.1188 0.7690 23 1 3.1292 -0.8866 1.3483 24 1 -0.3633 0.0806 1.0245 25 1 -0.3633 0.8469 -0.5821 26 1 -0.3633 -0.9276 -0.4424 27 1 3.1830 1.3088 -0.4424 28 1 1.5817 2.0735 -0.5821 29 1 2.2731 1.7432 1.0245 30 1 1.8948 -2.8434 -2.0829 31 1 0.4095 -2.0854 -1.4281 32 1 3.5238 -3.4836 -0.3035 33 1 1.8863 -5.9344 -0.2821 34 1 2.4135 -5.0856 -1.7551 35 1 4.7817 -5.4205 -1.0997 36 1 4.2539 -6.2691 0.3732 37 1 3.1190 -7.9787 -1.0195 38 1 3.6471 -7.1295 -2.4920 39 1 4.4543 -10.6595 -3.1624 40 1 0.3649 -2.0499 1.3841 41 1 1.8284 -2.7907 2.1047 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170721565.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:40 Heat of formation + Delta-G solvation = -1.929078 kcal Electronic energy + Delta-G solvation = -16713.921500 eV Core-core repulsion = 14207.187074 eV Total energy + Delta-G solvation = -2506.734425 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.24952 -36.15683 -33.76822 -32.16176 -30.14894 -28.27530 -28.20308 -27.23968 -25.52283 -22.42794 -20.88381 -19.98021 -19.69786 -18.36275 -16.32040 -15.91948 -15.50532 -14.94464 -14.46399 -14.29060 -13.93858 -13.74207 -13.12014 -12.74338 -12.37530 -12.30074 -12.15262 -11.92985 -11.66809 -11.58758 -11.27428 -11.23701 -11.13184 -10.82189 -10.60722 -10.54089 -10.44002 -9.68552 -9.64372 -9.51174 -9.27160 -8.99843 -8.31871 -8.05894 -5.96807 -3.98670 3.33237 3.40466 3.42041 3.45290 4.26860 4.45803 4.51835 4.56689 4.70621 4.88770 5.08246 5.17481 5.38994 5.39641 5.42377 5.46488 5.50785 5.58770 5.65670 5.71676 5.73252 5.79320 5.86902 5.91636 5.96253 6.00886 6.13698 6.20355 6.26092 6.29653 6.37998 6.77429 6.84729 7.18257 7.45796 7.71792 7.74343 7.87939 8.04073 8.47681 9.08906 9.65246 11.14719 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.057317 B = 0.003630 C = 0.003564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.393821 B = 7712.694838 C = 7854.624390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.109 4.109 3 C -0.113 4.113 4 C -0.161 4.161 5 H 0.106 0.894 6 C -0.130 4.130 7 C 0.084 3.916 8 H 0.080 0.920 9 N -0.679 5.679 10 C 0.059 3.941 11 C -0.107 4.107 12 C 0.022 3.978 13 C -0.517 4.517 14 H 0.055 0.945 15 C 0.055 3.945 16 N -0.897 5.897 17 Si 0.891 3.109 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 C -0.088 4.088 22 C -0.148 4.148 23 H 0.105 0.895 24 H 0.058 0.942 25 H 0.055 0.945 26 H 0.064 0.936 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.339 0.661 33 H 0.066 0.934 34 H 0.023 0.977 35 H 0.043 0.957 36 H 0.055 0.945 37 H 0.016 0.984 38 H 0.013 0.987 39 H 0.259 0.741 40 H 0.068 0.932 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.773 20.128 5.272 22.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.109 4.109 3 C -0.170 4.170 4 C -0.179 4.179 5 H 0.124 0.876 6 C -0.169 4.169 7 C -0.027 4.027 8 H 0.099 0.901 9 N -0.308 5.308 10 C -0.070 4.070 11 C -0.145 4.145 12 C -0.016 4.016 13 C -0.556 4.556 14 H 0.074 0.926 15 C -0.146 4.146 16 N -0.537 5.537 17 Si 0.719 3.281 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.211 1.211 21 C -0.126 4.126 22 C -0.166 4.166 23 H 0.123 0.877 24 H 0.077 0.923 25 H 0.075 0.925 26 H 0.083 0.917 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.157 0.843 33 H 0.084 0.916 34 H 0.041 0.959 35 H 0.062 0.938 36 H 0.074 0.926 37 H 0.034 0.966 38 H 0.031 0.969 39 H 0.069 0.931 40 H 0.087 0.913 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.943 19.652 5.783 21.971 hybrid contribution 0.990 -0.253 -1.054 1.469 sum -6.953 19.398 4.728 21.142 Atomic orbital electron populations 1.21399 0.92644 1.02139 1.01625 1.22008 0.94513 0.90686 1.03733 1.21306 1.00041 0.94001 1.01690 1.23910 1.01187 0.97510 0.95256 0.87611 1.22803 1.00139 0.94819 0.99140 1.22662 0.93289 0.94044 0.92664 0.90134 1.60559 1.04659 1.06721 1.58904 1.22147 1.00281 0.89938 0.94602 1.21617 0.93716 0.98070 1.01086 1.19069 0.97094 0.90624 0.94800 1.21307 0.97786 1.04608 1.31874 0.92630 1.25034 0.96583 0.97508 0.95457 1.69973 1.30581 1.18913 1.34188 0.86544 0.84133 0.79693 0.77690 1.19719 1.21026 1.21067 1.22033 0.99014 0.92955 0.98624 1.23367 1.01421 0.97422 0.94361 0.87670 0.92265 0.92548 0.91712 0.92486 0.92247 0.92250 0.91230 0.90866 0.84279 0.91590 0.95870 0.93772 0.92603 0.96597 0.96850 0.93117 0.91339 0.90358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.03 8.45 37.16 0.31 -0.71 16 2 C -0.11 -1.03 2.74 -153.20 -0.42 -1.45 16 3 C -0.11 -0.92 9.85 37.16 0.37 -0.55 16 4 C -0.16 -1.72 6.19 -87.93 -0.54 -2.27 16 5 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 6 C -0.13 -1.49 5.81 -24.81 -0.14 -1.63 16 7 C 0.08 1.06 3.26 -65.72 -0.21 0.84 16 8 H 0.08 1.03 7.86 -51.93 -0.41 0.62 16 9 N -0.68 -10.17 6.35 -104.62 -0.66 -10.84 16 10 C 0.06 1.04 5.56 -3.82 -0.02 1.02 16 11 C -0.11 -2.28 5.41 -26.73 -0.14 -2.42 16 12 C 0.02 0.57 4.97 -27.88 -0.14 0.44 16 13 C -0.52 -15.02 9.11 -34.44 -0.31 -15.34 16 14 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 15 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -27.43 13.29 55.43 0.74 -26.70 16 17 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 18 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 21 C -0.09 -0.98 6.00 -25.07 -0.15 -1.13 16 22 C -0.15 -1.55 6.52 -89.50 -0.58 -2.13 16 23 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 24 H 0.06 0.47 8.03 -51.93 -0.42 0.05 16 25 H 0.06 0.43 7.93 -51.93 -0.41 0.02 16 26 H 0.06 0.57 5.31 -51.93 -0.28 0.29 16 27 H 0.06 0.46 7.96 -51.93 -0.41 0.05 16 28 H 0.06 0.43 7.93 -51.93 -0.41 0.02 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.87 7.86 -51.93 -0.41 0.47 16 31 H 0.07 0.77 6.02 -51.93 -0.31 0.46 16 32 H 0.34 4.98 8.07 -39.29 -0.32 4.66 16 33 H 0.07 1.19 8.08 -51.93 -0.42 0.77 16 34 H 0.02 0.41 7.86 -51.93 -0.41 0.00 16 35 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 40 H 0.07 0.68 6.79 -51.93 -0.35 0.33 16 41 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 320.70 15.07 4.83 4.83 Total: -1.00 -29.87 320.70 -9.69 -39.56 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -7.48 Total: -0.05 kcal Atomic # 6 Polarization: -21.72 SS G_CDS: -2.09 Total: -23.82 kcal Atomic # 7 Polarization: -37.61 SS G_CDS: 0.07 Total: -37.53 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.87 -9.69 -39.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170721565.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.632 kcal (2) G-P(sol) polarization free energy of solvation -29.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds