Wall clock time and date at job start Sun Mar 29 2020 22:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 115.52711 * 2 1 4 4 C 1.55465 * 118.05967 * 214.11484 * 2 1 3 5 5 H 1.09002 * 119.42287 * 141.81062 * 4 2 1 6 6 C 1.54756 * 118.33968 * 346.20821 * 4 2 1 7 7 C 1.54893 * 103.96407 * 272.82296 * 6 4 2 8 8 H 1.08999 * 110.75721 * 156.32683 * 7 6 4 9 9 N 1.46901 * 110.75266 * 279.51294 * 7 6 4 10 10 C 1.46905 * 110.99870 * 271.06311 * 9 7 6 11 11 C 1.52993 * 109.47039 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.47360 * 180.02562 * 11 10 9 13 13 C 1.50697 * 109.47387 * 179.97438 * 12 11 10 14 14 H 1.08000 * 120.00144 * 0.02562 * 13 12 11 15 15 C 1.37874 * 119.99821 * 179.97438 * 13 12 11 16 16 N 1.31507 * 120.00508 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 119.99834 * 179.97438 * 15 13 12 18 18 H 1.48494 * 109.47164 * 0.02562 * 17 15 13 19 19 H 1.48507 * 109.46812 * 120.00223 * 17 15 13 20 20 H 1.48494 * 109.47320 * 240.00038 * 17 15 13 21 21 C 1.54887 * 102.91532 * 37.91931 * 7 6 4 22 22 C 1.52998 * 117.45932 * 145.49922 * 2 1 3 23 23 H 1.09006 * 119.29671 * 219.83499 * 22 2 1 24 24 H 1.08997 * 109.46895 * 274.49825 * 1 2 3 25 25 H 1.08999 * 109.47059 * 34.50392 * 1 2 3 26 26 H 1.09001 * 109.46835 * 154.50421 * 1 2 3 27 27 H 1.09003 * 109.47062 * 205.50032 * 3 2 1 28 28 H 1.09002 * 109.47079 * 325.49763 * 3 2 1 29 29 H 1.08997 * 109.47031 * 85.49770 * 3 2 1 30 30 H 1.08997 * 110.69812 * 154.16863 * 6 4 2 31 31 H 1.09001 * 110.50244 * 31.37509 * 6 4 2 32 32 H 1.00901 * 111.00067 * 35.01486 * 9 7 6 33 33 H 1.09001 * 109.46798 * 300.00327 * 10 9 7 34 34 H 1.08998 * 109.46961 * 60.00043 * 10 9 7 35 35 H 1.09001 * 109.47393 * 299.99719 * 11 10 9 36 36 H 1.08998 * 109.47408 * 60.00073 * 11 10 9 37 37 H 1.09001 * 109.46514 * 300.00105 * 12 11 10 38 38 H 1.08998 * 109.46924 * 59.99625 * 12 11 10 39 39 H 0.96997 * 120.00792 * 179.97438 * 16 15 13 40 40 H 1.08997 * 110.48896 * 80.64314 * 21 7 6 41 41 H 1.09005 * 110.48482 * 203.28911 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1893 1.3806 0.0000 4 6 2.2613 -1.1358 -0.7694 5 1 3.1717 -0.9072 -1.3236 6 6 1.4396 -2.3698 -1.2132 7 6 1.4961 -3.3166 0.0114 8 1 0.6512 -4.0052 0.0066 9 7 2.7662 -4.0542 0.0408 10 6 2.6646 -5.3080 -0.7180 11 6 4.0032 -6.0468 -0.6640 12 6 3.8976 -7.3523 -1.4548 13 6 5.2163 -8.0797 -1.4021 14 1 6.0467 -7.6537 -0.8585 15 6 5.3625 -9.2895 -2.0470 16 7 4.3514 -9.8086 -2.7085 17 14 6.9975 -10.1909 -1.9822 18 1 7.9665 -9.4014 -1.1805 19 1 6.8041 -11.5223 -1.3535 20 1 7.5212 -10.3658 -3.3607 21 6 1.4010 -2.3393 1.2093 22 6 2.2355 -1.1188 0.7690 23 1 3.1292 -0.8866 1.3483 24 1 -0.3633 0.0806 1.0245 25 1 -0.3633 0.8469 -0.5821 26 1 -0.3633 -0.9276 -0.4424 27 1 3.1830 1.3088 -0.4424 28 1 1.5817 2.0735 -0.5821 29 1 2.2731 1.7432 1.0245 30 1 1.8948 -2.8434 -2.0829 31 1 0.4095 -2.0854 -1.4281 32 1 3.5238 -3.4836 -0.3035 33 1 1.8863 -5.9344 -0.2821 34 1 2.4135 -5.0856 -1.7551 35 1 4.7817 -5.4205 -1.0997 36 1 4.2539 -6.2691 0.3732 37 1 3.1190 -7.9787 -1.0195 38 1 3.6471 -7.1295 -2.4920 39 1 4.4543 -10.6595 -3.1624 40 1 0.3649 -2.0499 1.3841 41 1 1.8284 -2.7907 2.1047 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170721565.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:39 Heat of formation + Delta-G solvation = -18.449554 kcal Electronic energy + Delta-G solvation = -16714.637881 eV Core-core repulsion = 14207.187074 eV Total energy + Delta-G solvation = -2507.450807 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.12567 -37.48754 -35.56476 -33.79635 -31.60537 -29.16278 -29.03812 -28.31953 -27.11998 -24.26274 -22.16253 -21.45236 -20.60073 -19.17503 -18.49702 -16.87935 -16.71687 -16.46027 -16.13102 -15.31251 -15.07592 -14.90383 -14.34993 -14.09031 -13.65873 -13.51226 -13.30904 -12.98909 -12.92614 -12.73840 -12.61170 -12.49193 -12.30263 -12.28539 -12.13778 -12.04466 -11.55061 -11.45404 -11.38032 -11.09513 -10.56794 -10.40948 -10.30555 -9.29293 -8.20982 -6.32160 1.39487 1.39918 1.53699 2.40509 2.61556 3.11991 3.23401 3.54346 3.71840 3.83422 4.18842 4.20768 4.24502 4.30001 4.41961 4.54598 4.57072 4.64271 4.72019 4.76819 4.84168 4.85399 4.90259 5.00108 5.06447 5.08671 5.09957 5.15473 5.22095 5.26687 5.31740 5.34074 5.40012 5.51774 5.57269 5.74227 5.84978 6.14959 6.28206 6.51934 6.84887 7.37171 8.91217 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.057317 B = 0.003630 C = 0.003564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.393821 B = 7712.694838 C = 7854.624390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.097 4.097 3 C -0.114 4.114 4 C -0.172 4.172 5 H 0.103 0.897 6 C -0.124 4.124 7 C 0.080 3.920 8 H 0.078 0.922 9 N -0.678 5.678 10 C 0.073 3.927 11 C -0.092 4.092 12 C 0.026 3.974 13 C -0.543 4.543 14 H 0.059 0.941 15 C -0.002 4.002 16 N -0.934 5.934 17 Si 0.967 3.033 18 H -0.262 1.262 19 H -0.277 1.277 20 H -0.277 1.277 21 C -0.082 4.082 22 C -0.153 4.153 23 H 0.104 0.896 24 H 0.066 0.934 25 H 0.066 0.934 26 H 0.060 0.940 27 H 0.054 0.946 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.055 0.945 31 H 0.085 0.915 32 H 0.342 0.658 33 H 0.061 0.939 34 H 0.021 0.979 35 H 0.047 0.953 36 H 0.052 0.948 37 H -0.008 1.008 38 H -0.010 1.010 39 H 0.264 0.736 40 H 0.083 0.917 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.420 21.404 5.870 23.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.097 4.097 3 C -0.171 4.171 4 C -0.190 4.190 5 H 0.121 0.879 6 C -0.163 4.163 7 C -0.030 4.030 8 H 0.096 0.904 9 N -0.308 5.308 10 C -0.056 4.056 11 C -0.130 4.130 12 C -0.012 4.012 13 C -0.581 4.581 14 H 0.077 0.923 15 C -0.200 4.200 16 N -0.574 5.574 17 Si 0.791 3.209 18 H -0.186 1.186 19 H -0.203 1.203 20 H -0.202 1.202 21 C -0.119 4.119 22 C -0.171 4.171 23 H 0.122 0.878 24 H 0.085 0.915 25 H 0.085 0.915 26 H 0.079 0.921 27 H 0.073 0.927 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.073 0.927 31 H 0.103 0.897 32 H 0.160 0.840 33 H 0.080 0.920 34 H 0.039 0.961 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.010 0.990 38 H 0.009 0.991 39 H 0.073 0.927 40 H 0.101 0.899 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.595 20.950 6.390 23.183 hybrid contribution 0.837 -0.628 -1.244 1.626 sum -6.758 20.322 5.146 22.025 Atomic orbital electron populations 1.21439 0.91782 1.02437 1.02318 1.22147 0.95171 0.90778 1.01609 1.21340 1.00024 0.93339 1.02395 1.23901 1.01513 0.98233 0.95346 0.87929 1.22708 1.00892 0.94808 0.97914 1.22750 0.91780 0.94298 0.94220 0.90425 1.60506 1.06110 1.06127 1.58080 1.21838 0.97855 0.90988 0.94911 1.21372 0.95933 0.95992 0.99722 1.18968 0.95563 0.92664 0.94011 1.21730 0.98754 1.05421 1.32214 0.92308 1.26007 1.00726 0.98436 0.94797 1.70099 1.32973 1.19509 1.34853 0.85373 0.79148 0.78279 0.78093 1.18625 1.20263 1.20240 1.21961 0.99990 0.92635 0.97349 1.23365 1.01684 0.97997 0.94018 0.87790 0.91495 0.91466 0.92104 0.92691 0.91191 0.91491 0.92668 0.89712 0.83988 0.92044 0.96102 0.93386 0.92954 0.99011 0.99135 0.92735 0.89859 0.91194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.77 8.45 71.98 0.61 -1.17 16 2 C -0.10 -1.62 2.74 -51.33 -0.14 -1.76 16 3 C -0.11 -1.58 9.85 71.98 0.71 -0.87 16 4 C -0.17 -3.46 6.19 -9.05 -0.06 -3.52 16 5 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 6 C -0.12 -2.73 5.81 31.84 0.19 -2.55 16 7 C 0.08 1.93 3.26 46.21 0.15 2.08 16 8 H 0.08 1.93 7.86 -2.39 -0.02 1.91 16 9 N -0.68 -20.01 6.35 -484.92 -3.08 -23.09 16 10 C 0.07 2.61 5.56 86.30 0.48 3.09 16 11 C -0.09 -3.97 5.41 30.59 0.17 -3.81 16 12 C 0.03 1.40 4.97 29.85 0.15 1.54 16 13 C -0.54 -31.91 9.11 25.60 0.23 -31.68 16 14 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 15 C 0.00 -0.13 5.46 84.66 0.46 0.34 16 16 N -0.93 -57.92 13.29 21.45 0.28 -57.64 16 17 Si 0.97 45.12 29.54 68.60 2.03 47.15 16 18 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 19 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 20 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 21 C -0.08 -1.68 6.00 31.67 0.19 -1.49 16 22 C -0.15 -2.96 6.52 -10.07 -0.07 -3.03 16 23 H 0.10 2.05 8.14 -2.38 -0.02 2.03 16 24 H 0.07 0.88 8.03 -2.39 -0.02 0.86 16 25 H 0.07 0.83 7.93 -2.39 -0.02 0.82 16 26 H 0.06 0.93 5.31 -2.39 -0.01 0.92 16 27 H 0.05 0.79 7.96 -2.39 -0.02 0.77 16 28 H 0.07 0.83 7.93 -2.39 -0.02 0.81 16 29 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.05 1.37 7.86 -2.39 -0.02 1.35 16 31 H 0.08 1.66 6.02 -2.39 -0.01 1.65 16 32 H 0.34 9.83 8.07 -89.69 -0.72 9.11 16 33 H 0.06 2.25 8.08 -2.39 -0.02 2.23 16 34 H 0.02 0.75 7.86 -2.39 -0.02 0.73 16 35 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 37 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 38 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 39 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 40 H 0.08 1.48 6.79 -2.39 -0.02 1.46 16 41 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 Total: -1.00 -63.52 320.70 2.56 -60.97 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: 0.25 Total: 15.42 kcal Atomic # 6 Polarization: -45.88 SS G_CDS: 3.07 Total: -42.81 kcal Atomic # 7 Polarization: -77.93 SS G_CDS: -2.79 Total: -80.72 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -63.52 2.56 -60.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170721565.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.518 kcal (2) G-P(sol) polarization free energy of solvation -63.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds