Wall clock time and date at job start Sun Mar 29 2020 21:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86803 * 120.00040 * 2 1 4 4 H 1.48497 * 109.47017 * 240.00398 * 3 2 1 5 5 H 1.48501 * 109.46738 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47076 * 120.00224 * 3 2 1 7 7 C 1.38811 * 119.99954 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99945 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00230 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99991 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46840 * 85.00591 * 10 9 7 12 12 C 1.53001 * 109.46886 * 180.02562 * 11 10 9 13 13 C 1.53002 * 109.46963 * 299.99499 * 12 11 10 14 14 C 1.53002 * 109.47454 * 180.02562 * 13 12 11 15 15 C 1.52993 * 109.47066 * 180.02562 * 14 13 12 16 16 C 1.52996 * 109.47476 * 299.99899 * 15 14 13 17 17 C 1.52997 * 109.46947 * 60.00339 * 16 15 14 18 18 C 1.52996 * 109.47343 * 300.00258 * 13 12 11 19 19 C 1.52997 * 109.47092 * 60.00194 * 13 12 11 20 20 C 1.53002 * 109.46799 * 205.00357 * 10 9 7 21 21 H 0.97001 * 120.00026 * 359.97438 * 1 2 3 22 22 H 0.97002 * 119.99599 * 0.02562 * 9 7 2 23 23 H 1.09002 * 109.47391 * 325.00261 * 10 9 7 24 24 H 1.09001 * 109.47194 * 299.99493 * 11 10 9 25 25 H 1.08992 * 109.47399 * 59.99666 * 11 10 9 26 26 H 1.09000 * 109.47437 * 180.02562 * 12 11 10 27 27 H 1.09002 * 109.47508 * 59.99571 * 12 11 10 28 28 H 1.09002 * 109.46838 * 300.00606 * 14 13 12 29 29 H 1.08996 * 109.46698 * 60.00102 * 14 13 12 30 30 H 1.09000 * 109.46925 * 180.02562 * 15 14 13 31 31 H 1.08996 * 109.47340 * 60.00420 * 15 14 13 32 32 H 1.09004 * 109.47108 * 300.00285 * 16 15 14 33 33 H 1.09001 * 109.47367 * 180.02562 * 16 15 14 34 34 H 1.09002 * 109.47153 * 180.02562 * 17 16 15 35 35 H 1.08988 * 109.47545 * 60.00184 * 17 16 15 36 36 H 1.08996 * 109.47261 * 300.00175 * 18 13 12 37 37 H 1.09004 * 109.47368 * 59.99791 * 18 13 12 38 38 H 1.09001 * 109.47375 * 180.02562 * 19 13 12 39 39 H 1.09002 * 109.47497 * 59.99850 * 19 13 12 40 40 H 1.09002 * 109.47075 * 299.99543 * 20 10 9 41 41 H 1.08996 * 109.47407 * 60.00500 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1038 1.6964 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6964 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 2.4218 -4.0356 1.4365 12 6 3.1874 -5.3603 1.4365 13 6 2.3107 -6.4559 0.8266 14 6 3.0760 -7.7808 0.8271 15 6 2.1995 -8.8762 0.2166 16 6 0.9206 -9.0258 1.0429 17 6 0.1553 -7.7010 1.0424 18 6 1.0323 -6.6057 1.6537 19 6 1.9469 -6.0771 -0.6104 20 6 1.1808 -4.7521 -0.6103 21 1 -0.4850 0.8401 0.0004 22 1 0.3555 -2.3881 -0.0005 23 1 2.9688 -3.5505 -0.5899 24 1 3.0467 -3.2553 1.8709 25 1 1.5111 -4.1418 2.0259 26 1 3.4462 -5.6305 2.4602 27 1 4.0981 -5.2536 0.8472 28 1 3.9870 -7.6744 0.2381 29 1 3.3348 -8.0505 1.8510 30 1 2.7446 -9.8202 0.2174 31 1 1.9411 -8.6064 -0.8073 32 1 1.1790 -9.2957 2.0669 33 1 0.2964 -9.8065 0.6083 34 1 -0.7557 -7.8073 1.6314 35 1 -0.1032 -7.4311 0.0185 36 1 1.2915 -6.8756 2.6775 37 1 0.4869 -5.6620 1.6538 38 1 1.3220 -6.8575 -1.0448 39 1 2.8576 -5.9704 -1.1998 40 1 0.2701 -4.8584 -0.0208 41 1 0.9217 -4.4823 -1.6340 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173117024.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:08 Heat of formation + Delta-G solvation = -30.246968 kcal Electronic energy + Delta-G solvation = -17958.091657 eV Core-core repulsion = 15450.129276 eV Total energy + Delta-G solvation = -2507.962381 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.16009 -36.21054 -33.53238 -31.35989 -30.67010 -30.24887 -28.58546 -25.27070 -23.27532 -22.43312 -22.32129 -20.90820 -19.45157 -17.93099 -16.85630 -15.76576 -15.02706 -14.42629 -14.22142 -14.05163 -13.58555 -13.44030 -13.03162 -12.87127 -12.63991 -12.18380 -11.93085 -11.70576 -11.30131 -11.26088 -11.02652 -10.91057 -10.78786 -10.65777 -10.52859 -10.45783 -10.17160 -9.90364 -9.81627 -9.58175 -9.39445 -9.26125 -8.78190 -6.86896 -5.70210 -2.97828 3.47451 3.51681 3.52732 4.63482 4.73616 4.77235 4.85843 5.17221 5.27201 5.36757 5.44136 5.51262 5.58765 5.62642 5.68914 5.70645 5.80949 5.86298 5.95669 5.99377 6.02794 6.07460 6.09387 6.17848 6.23555 6.24498 6.36747 6.39234 6.43587 6.55146 6.58091 6.63370 6.73667 6.81014 6.91491 7.14214 7.28181 7.75756 8.49304 9.59748 10.20263 10.54758 11.52778 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.051640 B = 0.005489 C = 0.005303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.086670 B = 5100.165670 C = 5279.110494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.016 4.016 3 Si 0.905 3.095 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.287 1.287 7 C -0.234 4.234 8 H 0.068 0.932 9 N -0.726 5.726 10 C 0.180 3.820 11 C -0.135 4.135 12 C -0.105 4.105 13 C -0.052 4.052 14 C -0.108 4.108 15 C -0.121 4.121 16 C -0.117 4.117 17 C -0.122 4.122 18 C -0.111 4.111 19 C -0.104 4.104 20 C -0.125 4.125 21 H 0.254 0.746 22 H 0.382 0.618 23 H 0.042 0.958 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.050 0.950 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.055 0.945 35 H 0.065 0.935 36 H 0.054 0.946 37 H 0.074 0.926 38 H 0.060 0.940 39 H 0.056 0.944 40 H 0.060 0.940 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.417 -17.787 1.688 18.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.211 4.211 3 Si 0.736 3.264 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.214 1.214 7 C -0.366 4.366 8 H 0.086 0.914 9 N -0.367 5.367 10 C 0.070 3.930 11 C -0.175 4.175 12 C -0.144 4.144 13 C -0.052 4.052 14 C -0.145 4.145 15 C -0.158 4.158 16 C -0.155 4.155 17 C -0.159 4.159 18 C -0.148 4.148 19 C -0.142 4.142 20 C -0.163 4.163 21 H 0.064 0.936 22 H 0.216 0.784 23 H 0.060 0.940 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.092 0.908 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.079 0.921 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.529 -17.621 1.671 18.049 hybrid contribution 0.190 0.989 0.109 1.013 sum 3.719 -16.632 1.779 17.135 Atomic orbital electron populations 1.69650 1.05079 1.25594 1.58100 1.24714 0.95478 0.97563 1.03356 0.86299 0.78521 0.83783 0.77790 1.21359 1.21755 1.21379 1.19215 0.90921 0.84283 1.42159 0.91379 1.42449 1.05733 0.99896 1.88585 1.20195 0.94191 0.85824 0.92800 1.22264 0.99625 0.94909 1.00723 1.21586 0.98057 0.95290 0.99440 1.20486 0.95068 0.93955 0.95705 1.21588 0.97894 0.94549 1.00504 1.21567 0.96218 0.98195 0.99822 1.21515 0.96597 0.97365 0.99980 1.21591 0.97940 0.94885 1.01502 1.21676 0.95890 0.99056 0.98203 1.21626 0.99959 0.97159 0.95444 1.21843 0.99082 0.94452 1.00915 0.93581 0.78435 0.94004 0.92494 0.92517 0.93138 0.92604 0.92324 0.92436 0.92738 0.91693 0.92457 0.92681 0.92579 0.91590 0.92697 0.90754 0.92104 0.92525 0.92113 0.92362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.73 13.06 55.49 0.72 -28.00 16 2 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 3 Si 0.90 22.77 29.55 -169.99 -5.02 17.74 16 4 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 5 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 6 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 7 C -0.23 -6.64 9.93 -15.06 -0.15 -6.79 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.73 -18.60 5.12 -53.42 -0.27 -18.88 16 10 C 0.18 3.65 2.77 -67.93 -0.19 3.46 16 11 C -0.13 -2.47 5.23 -26.73 -0.14 -2.61 16 12 C -0.11 -1.54 4.73 -26.73 -0.13 -1.67 16 13 C -0.05 -0.67 0.51 -154.51 -0.08 -0.75 16 14 C -0.11 -1.19 4.73 -26.73 -0.13 -1.32 16 15 C -0.12 -1.20 5.65 -26.74 -0.15 -1.36 16 16 C -0.12 -1.16 5.92 -26.73 -0.16 -1.32 16 17 C -0.12 -1.37 5.65 -26.70 -0.15 -1.52 16 18 C -0.11 -1.43 4.04 -26.71 -0.11 -1.53 16 19 C -0.10 -1.43 4.04 -26.70 -0.11 -1.54 16 20 C -0.12 -2.12 5.12 -26.70 -0.14 -2.26 16 21 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 22 H 0.38 10.40 7.80 -40.82 -0.32 10.09 16 23 H 0.04 0.89 8.08 -51.93 -0.42 0.47 16 24 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 25 H 0.06 1.06 6.43 -51.93 -0.33 0.73 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.66 6.43 -51.93 -0.33 0.33 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.77 6.42 -51.94 -0.33 0.44 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 1.10 4.81 -51.93 -0.25 0.85 16 38 H 0.06 0.77 4.81 -51.93 -0.25 0.52 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.06 1.04 6.43 -51.93 -0.33 0.71 16 41 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 297.92 15.07 4.49 4.49 Total: -1.00 -29.49 297.92 -8.99 -38.48 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -7.19 Total: 5.93 kcal Atomic # 6 Polarization: -18.04 SS G_CDS: -1.72 Total: -19.76 kcal Atomic # 7 Polarization: -47.33 SS G_CDS: 0.45 Total: -46.88 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.74 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -29.49 -8.99 -38.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173117024.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.232 kcal (2) G-P(sol) polarization free energy of solvation -29.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds