Wall clock time and date at job start Sun Mar 29 2020 21:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86803 * 120.00040 * 2 1 4 4 H 1.48497 * 109.47017 * 240.00398 * 3 2 1 5 5 H 1.48501 * 109.46738 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47076 * 120.00224 * 3 2 1 7 7 C 1.38811 * 119.99954 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99945 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00230 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99991 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46840 * 85.00591 * 10 9 7 12 12 C 1.53001 * 109.46886 * 180.02562 * 11 10 9 13 13 C 1.53002 * 109.46963 * 299.99499 * 12 11 10 14 14 C 1.53002 * 109.47454 * 180.02562 * 13 12 11 15 15 C 1.52993 * 109.47066 * 180.02562 * 14 13 12 16 16 C 1.52996 * 109.47476 * 299.99899 * 15 14 13 17 17 C 1.52997 * 109.46947 * 60.00339 * 16 15 14 18 18 C 1.52996 * 109.47343 * 300.00258 * 13 12 11 19 19 C 1.52997 * 109.47092 * 60.00194 * 13 12 11 20 20 C 1.53002 * 109.46799 * 205.00357 * 10 9 7 21 21 H 0.97001 * 120.00026 * 359.97438 * 1 2 3 22 22 H 0.97002 * 119.99599 * 0.02562 * 9 7 2 23 23 H 1.09002 * 109.47391 * 325.00261 * 10 9 7 24 24 H 1.09001 * 109.47194 * 299.99493 * 11 10 9 25 25 H 1.08992 * 109.47399 * 59.99666 * 11 10 9 26 26 H 1.09000 * 109.47437 * 180.02562 * 12 11 10 27 27 H 1.09002 * 109.47508 * 59.99571 * 12 11 10 28 28 H 1.09002 * 109.46838 * 300.00606 * 14 13 12 29 29 H 1.08996 * 109.46698 * 60.00102 * 14 13 12 30 30 H 1.09000 * 109.46925 * 180.02562 * 15 14 13 31 31 H 1.08996 * 109.47340 * 60.00420 * 15 14 13 32 32 H 1.09004 * 109.47108 * 300.00285 * 16 15 14 33 33 H 1.09001 * 109.47367 * 180.02562 * 16 15 14 34 34 H 1.09002 * 109.47153 * 180.02562 * 17 16 15 35 35 H 1.08988 * 109.47545 * 60.00184 * 17 16 15 36 36 H 1.08996 * 109.47261 * 300.00175 * 18 13 12 37 37 H 1.09004 * 109.47368 * 59.99791 * 18 13 12 38 38 H 1.09001 * 109.47375 * 180.02562 * 19 13 12 39 39 H 1.09002 * 109.47497 * 59.99850 * 19 13 12 40 40 H 1.09002 * 109.47075 * 299.99543 * 20 10 9 41 41 H 1.08996 * 109.47407 * 60.00500 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1038 1.6964 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6964 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 2.4218 -4.0356 1.4365 12 6 3.1874 -5.3603 1.4365 13 6 2.3107 -6.4559 0.8266 14 6 3.0760 -7.7808 0.8271 15 6 2.1995 -8.8762 0.2166 16 6 0.9206 -9.0258 1.0429 17 6 0.1553 -7.7010 1.0424 18 6 1.0323 -6.6057 1.6537 19 6 1.9469 -6.0771 -0.6104 20 6 1.1808 -4.7521 -0.6103 21 1 -0.4850 0.8401 0.0004 22 1 0.3555 -2.3881 -0.0005 23 1 2.9688 -3.5505 -0.5899 24 1 3.0467 -3.2553 1.8709 25 1 1.5111 -4.1418 2.0259 26 1 3.4462 -5.6305 2.4602 27 1 4.0981 -5.2536 0.8472 28 1 3.9870 -7.6744 0.2381 29 1 3.3348 -8.0505 1.8510 30 1 2.7446 -9.8202 0.2174 31 1 1.9411 -8.6064 -0.8073 32 1 1.1790 -9.2957 2.0669 33 1 0.2964 -9.8065 0.6083 34 1 -0.7557 -7.8073 1.6314 35 1 -0.1032 -7.4311 0.0185 36 1 1.2915 -6.8756 2.6775 37 1 0.4869 -5.6620 1.6538 38 1 1.3220 -6.8575 -1.0448 39 1 2.8576 -5.9704 -1.1998 40 1 0.2701 -4.8584 -0.0208 41 1 0.9217 -4.4823 -1.6340 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173117024.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:08 Heat of formation + Delta-G solvation = -46.151770 kcal Electronic energy + Delta-G solvation = -17958.781341 eV Core-core repulsion = 15450.129276 eV Total energy + Delta-G solvation = -2508.652065 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.28805 -37.63766 -35.24862 -33.01287 -31.75231 -31.53098 -30.13289 -26.77719 -24.95819 -23.66428 -23.44428 -22.11472 -20.75269 -19.43226 -18.58711 -17.03677 -16.61459 -15.76614 -15.49160 -15.29170 -15.08584 -14.91472 -14.34452 -14.18882 -13.82822 -13.56777 -13.03662 -12.93817 -12.84935 -12.78746 -12.53224 -12.29074 -12.17650 -12.09176 -11.90862 -11.80016 -11.68261 -11.45694 -11.19872 -10.90683 -10.72603 -10.54527 -10.49456 -8.97799 -7.93489 -5.21349 1.45429 1.48719 1.54813 2.56426 3.39146 3.69361 3.75352 3.87962 4.09283 4.12355 4.27735 4.38901 4.44193 4.49544 4.53908 4.61096 4.69036 4.73004 4.75979 4.78384 4.90200 4.93934 5.02341 5.09910 5.16495 5.19822 5.26607 5.27327 5.31429 5.38262 5.41832 5.47661 5.51517 5.55672 5.57683 5.65857 5.78341 5.79494 6.29549 7.34410 8.13073 8.36134 9.30216 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.051640 B = 0.005489 C = 0.005303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.086670 B = 5100.165670 C = 5279.110494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.077 4.077 3 Si 0.971 3.029 4 H -0.278 1.278 5 H -0.294 1.294 6 H -0.279 1.279 7 C -0.239 4.239 8 H 0.071 0.929 9 N -0.740 5.740 10 C 0.174 3.826 11 C -0.125 4.125 12 C -0.099 4.099 13 C -0.048 4.048 14 C -0.103 4.103 15 C -0.119 4.119 16 C -0.114 4.114 17 C -0.120 4.120 18 C -0.110 4.110 19 C -0.096 4.096 20 C -0.115 4.115 21 H 0.250 0.750 22 H 0.370 0.630 23 H 0.032 0.968 24 H 0.031 0.969 25 H 0.048 0.952 26 H 0.064 0.936 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.047 0.953 38 H 0.079 0.921 39 H 0.060 0.940 40 H 0.056 0.944 41 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.640 -19.740 1.758 20.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.269 4.269 3 Si 0.800 3.200 4 H -0.204 1.204 5 H -0.221 1.221 6 H -0.205 1.205 7 C -0.371 4.371 8 H 0.089 0.911 9 N -0.379 5.379 10 C 0.066 3.934 11 C -0.165 4.165 12 C -0.137 4.137 13 C -0.048 4.048 14 C -0.141 4.141 15 C -0.157 4.157 16 C -0.152 4.152 17 C -0.158 4.158 18 C -0.147 4.147 19 C -0.134 4.134 20 C -0.154 4.154 21 H 0.059 0.941 22 H 0.202 0.798 23 H 0.050 0.950 24 H 0.050 0.950 25 H 0.066 0.934 26 H 0.083 0.917 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.066 0.934 38 H 0.098 0.902 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.793 -19.616 1.742 20.268 hybrid contribution -0.190 1.561 0.098 1.575 sum 4.603 -18.055 1.840 18.723 Atomic orbital electron populations 1.69813 1.06601 1.26005 1.59865 1.25532 0.96359 1.00981 1.04033 0.85242 0.77233 0.79360 0.78146 1.20399 1.22065 1.20534 1.19582 0.91263 0.85494 1.40719 0.91085 1.42678 1.05343 1.01165 1.88725 1.20436 0.93902 0.84887 0.94143 1.22067 0.99300 0.96513 0.98615 1.21540 0.97893 0.93515 1.00737 1.20456 0.95053 0.94621 0.94694 1.21545 0.97936 0.93308 1.01307 1.21570 0.96090 0.98489 0.99503 1.21503 0.96591 0.96580 1.00477 1.21576 0.98024 0.95194 1.00996 1.21637 0.95880 0.98472 0.98757 1.21593 0.99899 0.95426 0.96482 1.21730 0.98793 0.95193 0.99646 0.94093 0.79834 0.94985 0.95002 0.93376 0.91685 0.92141 0.91740 0.91703 0.91070 0.91833 0.91970 0.91436 0.92256 0.92141 0.92167 0.93387 0.90228 0.92129 0.92505 0.93526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.12 13.06 21.65 0.28 -60.84 16 2 C -0.08 -4.56 5.50 84.86 0.47 -4.09 16 3 Si 0.97 47.33 29.55 68.60 2.03 49.36 16 4 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 5 H -0.29 -14.38 7.11 99.48 0.71 -13.68 16 6 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 7 C -0.24 -13.76 9.93 84.03 0.83 -12.93 16 8 H 0.07 3.96 7.83 -2.91 -0.02 3.94 16 9 N -0.74 -39.04 5.12 -322.94 -1.65 -40.69 16 10 C 0.17 7.20 2.77 44.99 0.12 7.33 16 11 C -0.12 -4.63 5.23 30.59 0.16 -4.47 16 12 C -0.10 -2.73 4.73 30.60 0.14 -2.59 16 13 C -0.05 -1.14 0.51 -52.18 -0.03 -1.17 16 14 C -0.10 -1.93 4.73 30.59 0.14 -1.79 16 15 C -0.12 -1.93 5.65 30.59 0.17 -1.76 16 16 C -0.11 -1.88 5.92 30.59 0.18 -1.70 16 17 C -0.12 -2.46 5.65 30.61 0.17 -2.29 16 18 C -0.11 -2.67 4.04 30.61 0.12 -2.54 16 19 C -0.10 -2.49 4.04 30.61 0.12 -2.37 16 20 C -0.12 -3.95 5.12 30.61 0.16 -3.79 16 21 H 0.25 15.26 8.31 -92.71 -0.77 14.49 16 22 H 0.37 20.96 7.80 -92.71 -0.72 20.24 16 23 H 0.03 1.38 8.08 -2.39 -0.02 1.36 16 24 H 0.03 1.30 8.14 -2.39 -0.02 1.29 16 25 H 0.05 1.85 6.43 -2.39 -0.02 1.83 16 26 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.06 1.07 6.43 -2.39 -0.02 1.05 16 32 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 33 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.06 1.30 6.42 -2.39 -0.02 1.28 16 36 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.05 1.41 4.81 -2.39 -0.01 1.40 16 38 H 0.08 1.81 4.81 -2.39 -0.01 1.80 16 39 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.06 1.98 6.43 -2.39 -0.02 1.97 16 41 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -63.72 297.92 3.70 -60.01 By element: Atomic # 1 Polarization: 26.05 SS G_CDS: 0.27 Total: 26.31 kcal Atomic # 6 Polarization: -36.94 SS G_CDS: 2.78 Total: -34.16 kcal Atomic # 7 Polarization: -100.16 SS G_CDS: -1.37 Total: -101.53 kcal Atomic # 14 Polarization: 47.33 SS G_CDS: 2.03 Total: 49.36 kcal Total: -63.72 3.70 -60.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173117024.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.862 kcal (2) G-P(sol) polarization free energy of solvation -63.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds