Wall clock time and date at job start Sun Mar 29 2020 22:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53781 * 113.61086 * 2 1 4 4 C 1.53781 * 87.07963 * 89.20182 * 3 2 1 5 5 N 1.46897 * 113.61346 * 139.98037 * 4 3 2 6 6 C 1.46899 * 111.00169 * 154.99853 * 5 4 3 7 7 C 1.53010 * 109.47199 * 205.00075 * 6 5 4 8 8 C 1.52998 * 109.46641 * 179.97438 * 7 6 5 9 9 C 1.52996 * 109.47459 * 60.00058 * 8 7 6 10 10 C 1.50702 * 109.47159 * 59.99342 * 9 8 7 11 11 H 1.08002 * 120.00299 * 0.02562 * 10 9 8 12 12 C 1.37884 * 119.99942 * 179.72211 * 10 9 8 13 13 N 1.31514 * 119.99698 * 0.28408 * 12 10 9 14 14 Si 1.86794 * 119.99837 * 180.27476 * 12 10 9 15 15 H 1.48496 * 109.47341 * 0.02562 * 14 12 10 16 16 H 1.48508 * 109.46983 * 120.00379 * 14 12 10 17 17 H 1.48503 * 109.47491 * 240.00192 * 14 12 10 18 18 C 1.52996 * 109.47068 * 299.99696 * 9 8 7 19 19 C 1.52996 * 109.47336 * 84.99867 * 6 5 4 20 20 C 1.53775 * 113.68944 * 97.53589 * 2 1 3 21 21 H 1.09004 * 109.47093 * 59.99935 * 1 2 3 22 22 H 1.08999 * 109.47276 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.46905 * 300.00066 * 1 2 3 24 24 H 1.08998 * 112.84802 * 228.80216 * 2 1 3 25 25 H 1.08996 * 113.61569 * 334.64725 * 3 2 1 26 26 H 1.09008 * 113.60895 * 203.74711 * 3 2 1 27 27 H 1.09000 * 113.61281 * 270.79274 * 4 3 2 28 28 H 1.00902 * 111.00005 * 278.95403 * 5 4 3 29 29 H 1.09003 * 109.46842 * 324.99634 * 6 5 4 30 30 H 1.09001 * 109.47172 * 59.99628 * 7 6 5 31 31 H 1.09003 * 109.46863 * 299.99546 * 7 6 5 32 32 H 1.08994 * 109.47403 * 299.99721 * 8 7 6 33 33 H 1.09004 * 109.46610 * 179.97438 * 8 7 6 34 34 H 1.08994 * 109.47405 * 179.97438 * 9 8 7 35 35 H 0.97005 * 119.99651 * 179.97438 * 13 12 10 36 36 H 1.09001 * 109.47094 * 180.02562 * 18 9 8 37 37 H 1.09003 * 109.46851 * 300.00074 * 18 9 8 38 38 H 1.09004 * 109.47066 * 300.00153 * 19 6 5 39 39 H 1.09003 * 109.47345 * 60.00075 * 19 6 5 40 40 H 1.09001 * 113.61374 * 156.32580 * 20 2 1 41 41 H 1.09002 * 113.61819 * 25.41963 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1459 1.4091 0.0000 4 6 2.0950 1.3459 1.5357 5 7 3.2801 1.9186 2.1878 6 6 2.9637 2.3752 3.5477 7 6 3.9462 3.4739 3.9584 8 6 3.6161 3.9498 5.3745 9 6 3.7299 2.7743 6.3472 10 6 5.1347 2.2297 6.3148 11 1 5.8727 2.6775 5.6657 12 6 5.4795 1.1637 7.1185 13 7 4.5809 0.6187 7.9091 14 14 7.2228 0.4936 7.0840 15 1 8.0350 1.2763 6.1181 16 1 7.8224 0.6040 8.4381 17 1 7.1971 -0.9320 6.6688 18 6 2.7475 1.6757 5.9365 19 6 3.0779 1.1994 4.5200 20 6 2.1479 -0.1847 1.3960 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.9532 -0.6616 -0.7558 25 1 1.4939 2.1706 -0.4276 26 1 3.1585 1.4429 -0.4022 27 1 1.1600 1.7152 1.9570 28 1 4.0428 1.2580 2.1965 29 1 1.9475 2.7690 3.5715 30 1 3.8648 4.3116 3.2657 31 1 4.9623 3.0801 3.9346 32 1 2.6001 4.3437 5.3979 33 1 4.3163 4.7323 5.6672 34 1 3.4952 3.1135 7.3560 35 1 4.8234 -0.1315 8.4742 36 1 2.8282 0.8384 6.6297 37 1 1.7314 2.0696 5.9599 38 1 2.3779 0.4167 4.2275 39 1 4.0940 0.8056 4.4963 40 1 3.1609 -0.5865 1.3755 41 1 1.4973 -0.7096 2.0955 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173324667.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:13 Heat of formation + Delta-G solvation = -9.569254 kcal Electronic energy + Delta-G solvation = -17758.173144 eV Core-core repulsion = 15251.107416 eV Total energy + Delta-G solvation = -2507.065728 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.48535 -37.60364 -33.78848 -31.78966 -29.47853 -29.08310 -27.03332 -25.52805 -24.59327 -22.47744 -21.34884 -20.63593 -18.98822 -18.24392 -16.01760 -15.66842 -15.28897 -14.60102 -14.10900 -13.76540 -13.35908 -13.19514 -13.04427 -12.61101 -12.42664 -12.16409 -11.91434 -11.60980 -11.34286 -11.20066 -10.98034 -10.85502 -10.70524 -10.52017 -10.29418 -10.19471 -10.08349 -9.96407 -9.60067 -9.06514 -8.89640 -8.62455 -8.26875 -7.73503 -5.93120 -3.96957 3.30422 3.39324 3.43023 4.47190 4.53697 4.65488 4.67931 4.94460 5.15342 5.37367 5.40746 5.51937 5.69476 5.72269 5.75415 5.87512 5.90681 5.93047 6.06044 6.12708 6.16355 6.34224 6.39772 6.42976 6.52289 6.60327 6.61689 6.81971 6.84749 6.94000 7.18265 7.25061 7.40326 7.56276 7.70443 7.79572 7.88672 8.00186 8.20637 8.54215 9.06158 9.66007 11.12795 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.029796 B = 0.006327 C = 0.005954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.491227 B = 4424.677155 C = 4701.683444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.118 4.118 3 C -0.126 4.126 4 C 0.073 3.927 5 N -0.679 5.679 6 C 0.093 3.907 7 C -0.092 4.092 8 C -0.107 4.107 9 C 0.042 3.958 10 C -0.497 4.497 11 H 0.056 0.944 12 C 0.059 3.941 13 N -0.892 5.892 14 Si 0.883 3.117 15 H -0.274 1.274 16 H -0.286 1.286 17 H -0.286 1.286 18 C -0.105 4.105 19 C -0.123 4.123 20 C -0.164 4.164 21 H 0.055 0.945 22 H 0.054 0.946 23 H 0.056 0.944 24 H 0.071 0.929 25 H 0.063 0.937 26 H 0.082 0.918 27 H 0.090 0.910 28 H 0.341 0.659 29 H 0.059 0.941 30 H 0.041 0.959 31 H 0.068 0.932 32 H 0.031 0.969 33 H 0.046 0.954 34 H 0.023 0.977 35 H 0.257 0.743 36 H 0.089 0.911 37 H 0.011 0.989 38 H 0.028 0.972 39 H 0.070 0.930 40 H 0.080 0.920 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.065 -0.499 -12.711 14.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.137 4.137 3 C -0.165 4.165 4 C -0.038 4.038 5 N -0.307 5.307 6 C -0.016 4.016 7 C -0.130 4.130 8 C -0.145 4.145 9 C 0.024 3.976 10 C -0.535 4.535 11 H 0.074 0.926 12 C -0.141 4.141 13 N -0.532 5.532 14 Si 0.711 3.289 15 H -0.198 1.198 16 H -0.212 1.212 17 H -0.213 1.213 18 C -0.143 4.143 19 C -0.162 4.162 20 C -0.204 4.204 21 H 0.074 0.926 22 H 0.073 0.927 23 H 0.075 0.925 24 H 0.090 0.910 25 H 0.081 0.919 26 H 0.100 0.900 27 H 0.108 0.892 28 H 0.160 0.840 29 H 0.077 0.923 30 H 0.059 0.941 31 H 0.086 0.914 32 H 0.050 0.950 33 H 0.065 0.935 34 H 0.041 0.959 35 H 0.067 0.933 36 H 0.107 0.893 37 H 0.030 0.970 38 H 0.047 0.953 39 H 0.089 0.911 40 H 0.099 0.901 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.150 0.007 -12.861 14.256 hybrid contribution 0.881 -1.431 0.559 1.771 sum -5.269 -1.423 -12.303 13.459 Atomic orbital electron populations 1.21587 0.94208 1.01501 1.01784 1.22213 0.95538 0.98160 0.97787 1.23139 1.00905 0.95709 0.96698 1.22993 0.94296 0.92028 0.94495 1.60616 1.07205 1.43060 1.19826 1.21655 0.98221 0.95896 0.85801 1.21352 0.99784 0.96261 0.95637 1.21559 0.98066 0.99202 0.95722 1.18698 0.94940 0.90515 0.93452 1.21208 0.95465 1.14421 1.22420 0.92614 1.24947 0.96591 0.97001 0.95552 1.69889 1.33024 1.24267 1.26021 0.86680 0.85648 0.78780 0.77776 1.19820 1.21202 1.21261 1.21465 0.95288 1.02260 0.95309 1.22032 1.01343 0.95956 0.96903 1.23735 1.01166 0.98601 0.96854 0.92565 0.92736 0.92492 0.91019 0.91865 0.89988 0.89195 0.84022 0.92287 0.94069 0.91370 0.95008 0.93549 0.95932 0.93317 0.89316 0.96985 0.95336 0.91124 0.90104 0.91715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.30 9.59 37.16 0.36 -0.94 16 2 C -0.12 -1.28 4.54 -89.81 -0.41 -1.69 16 3 C -0.13 -1.49 7.47 -25.92 -0.19 -1.68 16 4 C 0.07 1.00 3.65 -66.90 -0.24 0.75 16 5 N -0.68 -10.79 6.37 -98.89 -0.63 -11.42 16 6 C 0.09 1.70 2.46 -67.71 -0.17 1.53 16 7 C -0.09 -1.80 5.30 -26.73 -0.14 -1.94 16 8 C -0.11 -2.26 5.41 -26.73 -0.14 -2.40 16 9 C 0.04 1.04 2.58 -91.77 -0.24 0.81 16 10 C -0.50 -13.20 6.61 -34.44 -0.23 -13.42 16 11 H 0.06 1.48 6.71 -52.49 -0.35 1.13 16 12 C 0.06 1.62 5.31 -17.82 -0.09 1.52 16 13 N -0.89 -25.31 11.33 55.43 0.63 -24.68 16 14 Si 0.88 21.17 29.54 -169.99 -5.02 16.15 16 15 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 16 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 17 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 18 C -0.10 -2.45 5.24 -26.71 -0.14 -2.59 16 19 C -0.12 -2.54 4.96 -26.71 -0.13 -2.67 16 20 C -0.16 -2.08 7.26 -25.92 -0.19 -2.27 16 21 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 22 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.06 0.58 7.35 -51.93 -0.38 0.20 16 24 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.06 0.71 8.10 -51.93 -0.42 0.29 16 26 H 0.08 0.98 8.14 -51.92 -0.42 0.56 16 27 H 0.09 1.28 6.99 -51.93 -0.36 0.91 16 28 H 0.34 5.45 7.94 -39.29 -0.31 5.13 16 29 H 0.06 1.08 7.46 -51.93 -0.39 0.69 16 30 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 1.44 6.62 -51.93 -0.34 1.09 16 32 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 36 H 0.09 2.35 6.08 -51.93 -0.32 2.03 16 37 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 38 H 0.03 0.55 8.07 -51.93 -0.42 0.13 16 39 H 0.07 1.61 7.21 -51.93 -0.37 1.24 16 40 H 0.08 1.03 7.82 -51.93 -0.41 0.63 16 41 H 0.06 0.85 8.10 -51.93 -0.42 0.43 16 LS Contribution 308.98 15.07 4.66 4.66 Total: -1.00 -26.89 308.98 -9.76 -36.66 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -7.44 Total: 3.63 kcal Atomic # 6 Polarization: -23.03 SS G_CDS: -1.96 Total: -24.99 kcal Atomic # 7 Polarization: -36.10 SS G_CDS: 0.00 Total: -36.10 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -26.89 -9.76 -36.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173324667.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.087 kcal (2) G-P(sol) polarization free energy of solvation -26.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds