Wall clock time and date at job start Sun Mar 29 2020 22:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53781 * 113.61086 * 2 1 4 4 C 1.53781 * 87.07963 * 89.20182 * 3 2 1 5 5 N 1.46897 * 113.61346 * 139.98037 * 4 3 2 6 6 C 1.46899 * 111.00169 * 154.99853 * 5 4 3 7 7 C 1.53010 * 109.47199 * 205.00075 * 6 5 4 8 8 C 1.52998 * 109.46641 * 179.97438 * 7 6 5 9 9 C 1.52996 * 109.47459 * 60.00058 * 8 7 6 10 10 C 1.50702 * 109.47159 * 59.99342 * 9 8 7 11 11 H 1.08002 * 120.00299 * 0.02562 * 10 9 8 12 12 C 1.37884 * 119.99942 * 179.72211 * 10 9 8 13 13 N 1.31514 * 119.99698 * 0.28408 * 12 10 9 14 14 Si 1.86794 * 119.99837 * 180.27476 * 12 10 9 15 15 H 1.48496 * 109.47341 * 0.02562 * 14 12 10 16 16 H 1.48508 * 109.46983 * 120.00379 * 14 12 10 17 17 H 1.48503 * 109.47491 * 240.00192 * 14 12 10 18 18 C 1.52996 * 109.47068 * 299.99696 * 9 8 7 19 19 C 1.52996 * 109.47336 * 84.99867 * 6 5 4 20 20 C 1.53775 * 113.68944 * 97.53589 * 2 1 3 21 21 H 1.09004 * 109.47093 * 59.99935 * 1 2 3 22 22 H 1.08999 * 109.47276 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.46905 * 300.00066 * 1 2 3 24 24 H 1.08998 * 112.84802 * 228.80216 * 2 1 3 25 25 H 1.08996 * 113.61569 * 334.64725 * 3 2 1 26 26 H 1.09008 * 113.60895 * 203.74711 * 3 2 1 27 27 H 1.09000 * 113.61281 * 270.79274 * 4 3 2 28 28 H 1.00902 * 111.00005 * 278.95403 * 5 4 3 29 29 H 1.09003 * 109.46842 * 324.99634 * 6 5 4 30 30 H 1.09001 * 109.47172 * 59.99628 * 7 6 5 31 31 H 1.09003 * 109.46863 * 299.99546 * 7 6 5 32 32 H 1.08994 * 109.47403 * 299.99721 * 8 7 6 33 33 H 1.09004 * 109.46610 * 179.97438 * 8 7 6 34 34 H 1.08994 * 109.47405 * 179.97438 * 9 8 7 35 35 H 0.97005 * 119.99651 * 179.97438 * 13 12 10 36 36 H 1.09001 * 109.47094 * 180.02562 * 18 9 8 37 37 H 1.09003 * 109.46851 * 300.00074 * 18 9 8 38 38 H 1.09004 * 109.47066 * 300.00153 * 19 6 5 39 39 H 1.09003 * 109.47345 * 60.00075 * 19 6 5 40 40 H 1.09001 * 113.61374 * 156.32580 * 20 2 1 41 41 H 1.09002 * 113.61819 * 25.41963 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1459 1.4091 0.0000 4 6 2.0950 1.3459 1.5357 5 7 3.2801 1.9186 2.1878 6 6 2.9637 2.3752 3.5477 7 6 3.9462 3.4739 3.9584 8 6 3.6161 3.9498 5.3745 9 6 3.7299 2.7743 6.3472 10 6 5.1347 2.2297 6.3148 11 1 5.8727 2.6775 5.6657 12 6 5.4795 1.1637 7.1185 13 7 4.5809 0.6187 7.9091 14 14 7.2228 0.4936 7.0840 15 1 8.0350 1.2763 6.1181 16 1 7.8224 0.6040 8.4381 17 1 7.1971 -0.9320 6.6688 18 6 2.7475 1.6757 5.9365 19 6 3.0779 1.1994 4.5200 20 6 2.1479 -0.1847 1.3960 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.9532 -0.6616 -0.7558 25 1 1.4939 2.1706 -0.4276 26 1 3.1585 1.4429 -0.4022 27 1 1.1600 1.7152 1.9570 28 1 4.0428 1.2580 2.1965 29 1 1.9475 2.7690 3.5715 30 1 3.8648 4.3116 3.2657 31 1 4.9623 3.0801 3.9346 32 1 2.6001 4.3437 5.3979 33 1 4.3163 4.7323 5.6672 34 1 3.4952 3.1135 7.3560 35 1 4.8234 -0.1315 8.4742 36 1 2.8282 0.8384 6.6297 37 1 1.7314 2.0696 5.9599 38 1 2.3779 0.4167 4.2275 39 1 4.0940 0.8056 4.4963 40 1 3.1609 -0.5865 1.3755 41 1 1.4973 -0.7096 2.0955 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173324667.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:13 Heat of formation + Delta-G solvation = -23.560222 kcal Electronic energy + Delta-G solvation = -17758.779838 eV Core-core repulsion = 15251.107416 eV Total energy + Delta-G solvation = -2507.672422 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.62235 -39.16576 -35.40330 -33.60476 -31.21320 -30.34140 -28.41123 -26.55283 -26.47236 -23.59057 -23.04864 -22.21923 -20.63514 -19.43128 -17.78391 -16.90678 -16.86784 -16.38313 -15.54332 -15.00764 -14.81300 -14.60326 -14.55283 -14.11030 -13.62052 -13.32108 -13.20005 -13.09712 -12.91646 -12.84187 -12.63658 -12.43623 -12.34021 -12.08611 -11.74043 -11.72162 -11.47818 -11.21319 -11.15662 -10.71823 -10.66256 -10.52942 -10.29473 -9.09647 -8.02627 -6.12465 1.38486 1.42137 1.51897 2.45689 3.25479 3.32426 3.71714 3.74016 3.96705 4.07727 4.11072 4.29245 4.49055 4.59838 4.62961 4.72355 4.76284 4.81729 4.87100 4.89152 4.91747 4.99298 5.01814 5.08583 5.14932 5.20749 5.21892 5.28184 5.43657 5.46908 5.56256 5.57736 5.65122 5.67394 5.75126 5.97203 6.23341 6.35444 6.47068 6.58562 6.97926 7.53355 9.02274 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.029796 B = 0.006327 C = 0.005954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.491227 B = 4424.677155 C = 4701.683444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.107 4.107 3 C -0.118 4.118 4 C 0.063 3.937 5 N -0.675 5.675 6 C 0.105 3.895 7 C -0.086 4.086 8 C -0.102 4.102 9 C 0.037 3.963 10 C -0.501 4.501 11 H 0.053 0.947 12 C 0.012 3.988 13 N -0.921 5.921 14 Si 0.941 3.059 15 H -0.267 1.267 16 H -0.286 1.286 17 H -0.284 1.284 18 C -0.101 4.101 19 C -0.110 4.110 20 C -0.167 4.167 21 H 0.069 0.931 22 H 0.060 0.940 23 H 0.049 0.951 24 H 0.082 0.918 25 H 0.071 0.929 26 H 0.081 0.919 27 H 0.088 0.912 28 H 0.340 0.660 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.049 0.951 32 H 0.048 0.952 33 H 0.045 0.955 34 H -0.013 1.013 35 H 0.256 0.744 36 H 0.054 0.946 37 H 0.024 0.976 38 H 0.038 0.962 39 H 0.045 0.955 40 H 0.077 0.923 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.276 -0.343 -14.848 16.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.126 4.126 3 C -0.157 4.157 4 C -0.047 4.047 5 N -0.303 5.303 6 C -0.004 4.004 7 C -0.124 4.124 8 C -0.140 4.140 9 C 0.018 3.982 10 C -0.539 4.539 11 H 0.071 0.929 12 C -0.185 4.185 13 N -0.562 5.562 14 Si 0.768 3.232 15 H -0.191 1.191 16 H -0.212 1.212 17 H -0.210 1.210 18 C -0.140 4.140 19 C -0.149 4.149 20 C -0.206 4.206 21 H 0.087 0.913 22 H 0.080 0.920 23 H 0.068 0.932 24 H 0.101 0.899 25 H 0.090 0.910 26 H 0.100 0.900 27 H 0.106 0.894 28 H 0.159 0.841 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.005 0.995 35 H 0.065 0.935 36 H 0.073 0.927 37 H 0.042 0.958 38 H 0.057 0.943 39 H 0.064 0.936 40 H 0.096 0.904 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.361 0.170 -15.016 16.309 hybrid contribution 0.912 -1.467 1.252 2.134 sum -5.449 -1.297 -13.764 14.860 Atomic orbital electron populations 1.21601 0.93250 1.02114 1.02100 1.22190 0.96241 0.97588 0.96617 1.23081 1.01227 0.96589 0.94767 1.23152 0.93224 0.92678 0.95678 1.60634 1.08129 1.43586 1.17987 1.21451 0.98195 0.94387 0.86411 1.21268 0.98949 0.97243 0.94893 1.21470 0.99166 0.97611 0.95779 1.18704 0.94470 0.92289 0.92697 1.21434 0.96314 1.14235 1.21948 0.92873 1.25632 0.99954 0.97486 0.95465 1.70033 1.34669 1.24698 1.26776 0.85754 0.81607 0.78134 0.77692 1.19074 1.21174 1.21037 1.21337 0.95665 1.00667 0.96325 1.21874 0.99889 0.97258 0.95867 1.23727 1.01111 0.97636 0.98143 0.91252 0.92046 0.93175 0.89944 0.90987 0.90040 0.89416 0.84120 0.91552 0.92014 0.93222 0.93315 0.93606 0.99531 0.93490 0.92742 0.95763 0.94344 0.93650 0.90428 0.92461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.23 9.59 71.98 0.69 -1.54 16 2 C -0.11 -2.05 4.54 -10.27 -0.05 -2.09 16 3 C -0.12 -2.47 7.47 31.12 0.23 -2.24 16 4 C 0.06 1.60 3.65 45.44 0.17 1.76 16 5 N -0.68 -20.21 6.37 -466.77 -2.97 -23.18 16 6 C 0.11 3.67 2.46 44.92 0.11 3.78 16 7 C -0.09 -3.19 5.30 30.60 0.16 -3.03 16 8 C -0.10 -4.21 5.41 30.59 0.17 -4.04 16 9 C 0.04 1.84 2.58 -11.54 -0.03 1.81 16 10 C -0.50 -26.96 6.61 25.60 0.17 -26.79 16 11 H 0.05 2.84 6.71 -2.91 -0.02 2.82 16 12 C 0.01 0.67 5.31 84.66 0.45 1.12 16 13 N -0.92 -53.54 11.33 21.45 0.24 -53.30 16 14 Si 0.94 43.82 29.54 68.60 2.03 45.85 16 15 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 16 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 17 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 18 C -0.10 -4.80 5.24 30.61 0.16 -4.64 16 19 C -0.11 -4.49 4.96 30.61 0.15 -4.34 16 20 C -0.17 -3.93 7.26 31.12 0.23 -3.71 16 21 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 22 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 23 H 0.05 0.91 7.35 -2.39 -0.02 0.89 16 24 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.07 1.39 8.10 -2.39 -0.02 1.37 16 26 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 27 H 0.09 2.29 6.99 -2.39 -0.02 2.27 16 28 H 0.34 10.40 7.94 -89.69 -0.71 9.69 16 29 H 0.07 2.26 7.46 -2.39 -0.02 2.24 16 30 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.05 2.04 6.62 -2.39 -0.02 2.02 16 32 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 34 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 35 H 0.26 14.27 8.31 -92.70 -0.77 13.50 16 36 H 0.05 2.96 6.08 -2.39 -0.01 2.95 16 37 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.04 1.47 8.07 -2.38 -0.02 1.45 16 39 H 0.04 2.08 7.21 -2.39 -0.02 2.06 16 40 H 0.08 1.87 7.82 -2.39 -0.02 1.86 16 41 H 0.06 1.42 8.10 -2.39 -0.02 1.41 16 Total: -1.00 -57.41 308.98 2.17 -55.24 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: 0.27 Total: 19.33 kcal Atomic # 6 Polarization: -46.55 SS G_CDS: 2.61 Total: -43.94 kcal Atomic # 7 Polarization: -73.75 SS G_CDS: -2.73 Total: -76.48 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -57.41 2.17 -55.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173324667.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.681 kcal (2) G-P(sol) polarization free energy of solvation -57.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds