Wall clock time and date at job start Sun Mar 29 2020 21:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 120.00501 * 2 1 4 4 H 1.48497 * 109.46928 * 269.99894 * 3 2 1 5 5 H 1.48494 * 109.46939 * 29.99754 * 3 2 1 6 6 H 1.48502 * 109.47198 * 149.99808 * 3 2 1 7 7 C 1.37881 * 119.99695 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00053 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00247 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.47527 * 180.02562 * 9 7 2 11 11 C 1.52993 * 109.47126 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47356 * 299.99697 * 11 10 9 13 13 N 1.46898 * 109.47080 * 180.02562 * 12 11 10 14 14 C 1.46904 * 111.00107 * 154.99993 * 13 12 11 15 15 C 1.55238 * 110.46809 * 269.81105 * 14 13 12 16 16 C 1.54894 * 102.58338 * 203.38989 * 15 14 13 17 17 C 1.54266 * 104.31305 * 37.93170 * 16 15 14 18 18 C 1.53869 * 106.60031 * 336.32486 * 17 16 15 19 19 C 1.53004 * 109.46997 * 60.00367 * 12 11 10 20 20 C 1.53001 * 109.46571 * 300.00068 * 19 12 11 21 21 H 0.97003 * 119.99521 * 0.02562 * 1 2 3 22 22 H 1.08999 * 109.47477 * 59.99817 * 9 7 2 23 23 H 1.08995 * 109.47010 * 59.99868 * 10 9 7 24 24 H 1.08999 * 109.46948 * 299.99844 * 10 9 7 25 25 H 1.08999 * 109.46895 * 179.97438 * 11 10 9 26 26 H 1.08995 * 109.47189 * 60.00093 * 11 10 9 27 27 H 1.08995 * 109.47296 * 300.00331 * 12 11 10 28 28 H 1.00893 * 111.00206 * 278.95355 * 13 12 11 29 29 H 1.09007 * 110.42882 * 32.46126 * 14 13 12 30 30 H 1.08996 * 110.89448 * 85.10553 * 15 14 13 31 31 H 1.08993 * 110.76342 * 321.62219 * 15 14 13 32 32 H 1.09002 * 110.48891 * 279.18596 * 16 15 14 33 33 H 1.08998 * 110.48494 * 156.67683 * 16 15 14 34 34 H 1.09001 * 110.03084 * 95.60669 * 17 16 15 35 35 H 1.08996 * 110.03108 * 216.98559 * 17 16 15 36 36 H 1.08999 * 110.04012 * 119.28327 * 18 17 16 37 37 H 1.09006 * 110.02998 * 240.67078 * 18 17 16 38 38 H 1.08995 * 109.47128 * 59.99861 * 19 12 11 39 39 H 1.08999 * 109.47189 * 180.02562 * 19 12 11 40 40 H 1.08995 * 109.47225 * 299.99733 * 20 19 12 41 41 H 1.09004 * 109.46845 * 180.02562 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5114 -1.1943 0.0011 10 6 4.0214 -2.6368 0.0010 11 6 5.5513 -2.6368 0.0009 12 6 6.0613 -1.9156 -1.2483 13 7 7.5303 -1.9162 -1.2486 14 6 8.0566 -1.7966 -2.6149 15 6 8.2549 -3.2014 -3.2451 16 6 9.3227 -2.9347 -4.3350 17 6 10.2780 -1.9094 -3.6901 18 6 9.4730 -1.1858 -2.5964 19 6 5.5515 -0.4730 -1.2482 20 6 4.0214 -0.4730 -1.2481 21 1 -0.4849 0.8401 -0.0004 22 1 3.8745 -0.6803 0.8911 23 1 3.6584 -3.1504 -0.8892 24 1 3.6577 -3.1508 0.8907 25 1 5.9146 -3.6645 0.0013 26 1 5.9147 -2.1231 0.8909 27 1 5.6980 -2.4293 -2.1383 28 1 7.8923 -1.1840 -0.6564 29 1 7.3884 -1.1922 -3.2285 30 1 7.3282 -3.5613 -3.6921 31 1 8.6276 -3.9083 -2.5039 32 1 8.8596 -2.5154 -5.2283 33 1 9.8568 -3.8531 -4.5786 34 1 11.1322 -2.4218 -3.2476 35 1 10.6188 -1.1943 -4.4388 36 1 9.9365 -1.3471 -1.6231 37 1 9.4231 -0.1188 -2.8138 38 1 5.9148 0.0407 -0.3582 39 1 5.9144 0.0407 -2.1384 40 1 3.6581 -0.9867 -2.1381 41 1 3.6581 0.5547 -1.2485 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173325647.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:36 Heat of formation + Delta-G solvation = -32.437617 kcal Electronic energy + Delta-G solvation = -17532.541560 eV Core-core repulsion = 15024.484185 eV Total energy + Delta-G solvation = -2508.057375 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.04414 -37.47085 -34.06031 -32.07431 -30.10227 -29.28606 -28.74874 -26.35582 -23.77314 -22.02105 -20.92067 -20.26425 -20.11982 -18.86215 -16.60208 -16.16668 -15.65062 -15.18934 -14.35327 -14.13810 -13.51297 -13.41097 -13.25895 -12.97680 -12.66545 -12.32088 -12.05447 -11.64049 -11.38312 -11.26517 -11.15659 -10.98479 -10.81119 -10.69961 -10.60273 -10.52888 -10.34281 -10.01188 -9.79653 -9.52112 -9.08160 -8.86602 -8.50401 -8.10475 -6.04019 -4.02072 3.27783 3.38601 3.41268 4.25357 4.43607 4.48590 4.60314 4.85771 5.19570 5.26906 5.32446 5.38573 5.43743 5.45959 5.55919 5.64014 5.72027 5.78601 5.83191 5.93360 5.94837 6.04645 6.08578 6.16074 6.21175 6.24673 6.26697 6.36960 6.46020 6.57423 6.68142 6.79864 6.95631 7.06004 7.29599 7.38468 7.57383 7.62959 7.83442 8.57753 9.01229 9.59501 11.09609 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.041882 B = 0.005574 C = 0.005268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.384460 B = 5022.164856 C = 5314.027785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.067 3.933 3 Si 0.888 3.112 4 H -0.281 1.281 5 H -0.299 1.299 6 H -0.266 1.266 7 C -0.511 4.511 8 H 0.073 0.927 9 C 0.014 3.986 10 C -0.099 4.099 11 C -0.103 4.103 12 C 0.092 3.908 13 N -0.681 5.681 14 C 0.079 3.921 15 C -0.112 4.112 16 C -0.126 4.126 17 C -0.120 4.120 18 C -0.128 4.128 19 C -0.147 4.147 20 C -0.115 4.115 21 H 0.262 0.738 22 H 0.025 0.975 23 H 0.052 0.948 24 H 0.055 0.945 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.074 0.926 28 H 0.337 0.663 29 H 0.050 0.950 30 H 0.061 0.939 31 H 0.075 0.925 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.071 0.929 37 H 0.059 0.941 38 H 0.055 0.945 39 H 0.044 0.956 40 H 0.058 0.942 41 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.930 -3.023 -6.043 20.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.133 4.133 3 Si 0.719 3.281 4 H -0.209 1.209 5 H -0.227 1.227 6 H -0.191 1.191 7 C -0.549 4.549 8 H 0.091 0.909 9 C -0.005 4.005 10 C -0.137 4.137 11 C -0.142 4.142 12 C -0.018 4.018 13 N -0.310 5.310 14 C -0.031 4.031 15 C -0.150 4.150 16 C -0.164 4.164 17 C -0.158 4.158 18 C -0.166 4.166 19 C -0.187 4.187 20 C -0.153 4.153 21 H 0.072 0.928 22 H 0.043 0.957 23 H 0.071 0.929 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.092 0.908 28 H 0.155 0.845 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.094 0.906 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.090 0.910 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.063 0.937 40 H 0.077 0.923 41 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 18.831 -3.604 -6.022 20.096 hybrid contribution 0.115 2.078 -0.306 2.103 sum 18.946 -1.526 -6.328 20.033 Atomic orbital electron populations 1.69907 1.06288 1.26795 1.51275 1.25036 0.94663 0.99008 0.94631 0.86828 0.79891 0.83678 0.77686 1.20851 1.22676 1.19118 1.21124 0.89105 0.94360 1.50330 0.90918 1.19150 0.96306 0.92110 0.92924 1.21438 0.92379 0.98846 1.01018 1.21531 0.96761 0.99365 0.96503 1.21621 0.85599 0.95101 0.99436 1.60783 1.08106 1.52721 1.09420 1.22466 0.94470 0.95984 0.90180 1.22570 0.98238 0.97043 0.97131 1.22346 0.97049 0.98761 0.98262 1.22042 0.98177 0.97952 0.97606 1.22324 0.95427 0.99192 0.99664 1.22300 0.99028 0.97062 1.00262 1.21910 0.91768 1.00138 1.01506 0.92786 0.95733 0.92896 0.92614 0.92531 0.92745 0.90814 0.84485 0.93202 0.91973 0.90599 0.91920 0.91802 0.91909 0.92190 0.91016 0.92194 0.92595 0.93715 0.92330 0.93805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.04 13.96 55.43 0.77 -27.26 16 2 C 0.07 1.97 5.45 -17.82 -0.10 1.87 16 3 Si 0.89 22.37 24.37 -169.99 -4.14 18.23 16 4 H -0.28 -6.93 6.87 56.52 0.39 -6.54 16 5 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16 6 H -0.27 -6.42 6.53 56.52 0.37 -6.05 16 7 C -0.51 -14.47 9.14 -34.44 -0.31 -14.79 16 8 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 9 C 0.01 0.33 1.70 -91.77 -0.16 0.17 16 10 C -0.10 -1.97 5.14 -26.73 -0.14 -2.10 16 11 C -0.10 -1.72 5.53 -26.73 -0.15 -1.87 16 12 C 0.09 1.44 2.33 -67.71 -0.16 1.28 16 13 N -0.68 -9.05 6.08 -97.81 -0.59 -9.64 16 14 C 0.08 0.94 2.95 -65.86 -0.19 0.75 16 15 C -0.11 -1.24 6.60 -24.55 -0.16 -1.40 16 16 C -0.13 -1.17 6.82 -25.07 -0.17 -1.34 16 17 C -0.12 -1.06 6.80 -25.62 -0.17 -1.23 16 18 C -0.13 -1.28 6.27 -25.62 -0.16 -1.44 16 19 C -0.15 -2.56 5.16 -26.73 -0.14 -2.70 16 20 C -0.12 -2.48 4.68 -26.73 -0.13 -2.61 16 21 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 22 H 0.02 0.60 7.20 -51.93 -0.37 0.22 16 23 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 24 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 25 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.07 1.20 7.86 -51.93 -0.41 0.79 16 28 H 0.34 4.26 8.07 -39.30 -0.32 3.95 16 29 H 0.05 0.65 7.21 -51.93 -0.37 0.28 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.71 7.93 -51.93 -0.41 0.30 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.97 8.13 -51.93 -0.42 0.55 16 39 H 0.04 0.72 7.50 -51.93 -0.39 0.33 16 40 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 41 H 0.04 1.01 3.27 -51.93 -0.17 0.84 16 LS Contribution 304.64 15.07 4.59 4.59 Total: -1.00 -29.40 304.64 -9.05 -38.45 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -7.54 Total: 1.05 kcal Atomic # 6 Polarization: -23.28 SS G_CDS: -2.14 Total: -25.42 kcal Atomic # 7 Polarization: -37.09 SS G_CDS: 0.18 Total: -36.91 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -4.14 Total: 18.23 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -29.40 -9.05 -38.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173325647.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.011 kcal (2) G-P(sol) polarization free energy of solvation -29.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds