Wall clock time and date at job start Sun Mar 29 2020 21:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 120.00501 * 2 1 4 4 H 1.48497 * 109.46928 * 269.99894 * 3 2 1 5 5 H 1.48494 * 109.46939 * 29.99754 * 3 2 1 6 6 H 1.48502 * 109.47198 * 149.99808 * 3 2 1 7 7 C 1.37881 * 119.99695 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00053 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00247 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.47527 * 180.02562 * 9 7 2 11 11 C 1.52993 * 109.47126 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47356 * 299.99697 * 11 10 9 13 13 N 1.46898 * 109.47080 * 180.02562 * 12 11 10 14 14 C 1.46904 * 111.00107 * 154.99993 * 13 12 11 15 15 C 1.55238 * 110.46809 * 269.81105 * 14 13 12 16 16 C 1.54894 * 102.58338 * 203.38989 * 15 14 13 17 17 C 1.54266 * 104.31305 * 37.93170 * 16 15 14 18 18 C 1.53869 * 106.60031 * 336.32486 * 17 16 15 19 19 C 1.53004 * 109.46997 * 60.00367 * 12 11 10 20 20 C 1.53001 * 109.46571 * 300.00068 * 19 12 11 21 21 H 0.97003 * 119.99521 * 0.02562 * 1 2 3 22 22 H 1.08999 * 109.47477 * 59.99817 * 9 7 2 23 23 H 1.08995 * 109.47010 * 59.99868 * 10 9 7 24 24 H 1.08999 * 109.46948 * 299.99844 * 10 9 7 25 25 H 1.08999 * 109.46895 * 179.97438 * 11 10 9 26 26 H 1.08995 * 109.47189 * 60.00093 * 11 10 9 27 27 H 1.08995 * 109.47296 * 300.00331 * 12 11 10 28 28 H 1.00893 * 111.00206 * 278.95355 * 13 12 11 29 29 H 1.09007 * 110.42882 * 32.46126 * 14 13 12 30 30 H 1.08996 * 110.89448 * 85.10553 * 15 14 13 31 31 H 1.08993 * 110.76342 * 321.62219 * 15 14 13 32 32 H 1.09002 * 110.48891 * 279.18596 * 16 15 14 33 33 H 1.08998 * 110.48494 * 156.67683 * 16 15 14 34 34 H 1.09001 * 110.03084 * 95.60669 * 17 16 15 35 35 H 1.08996 * 110.03108 * 216.98559 * 17 16 15 36 36 H 1.08999 * 110.04012 * 119.28327 * 18 17 16 37 37 H 1.09006 * 110.02998 * 240.67078 * 18 17 16 38 38 H 1.08995 * 109.47128 * 59.99861 * 19 12 11 39 39 H 1.08999 * 109.47189 * 180.02562 * 19 12 11 40 40 H 1.08995 * 109.47225 * 299.99733 * 20 19 12 41 41 H 1.09004 * 109.46845 * 180.02562 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5114 -1.1943 0.0011 10 6 4.0214 -2.6368 0.0010 11 6 5.5513 -2.6368 0.0009 12 6 6.0613 -1.9156 -1.2483 13 7 7.5303 -1.9162 -1.2486 14 6 8.0566 -1.7966 -2.6149 15 6 8.2549 -3.2014 -3.2451 16 6 9.3227 -2.9347 -4.3350 17 6 10.2780 -1.9094 -3.6901 18 6 9.4730 -1.1858 -2.5964 19 6 5.5515 -0.4730 -1.2482 20 6 4.0214 -0.4730 -1.2481 21 1 -0.4849 0.8401 -0.0004 22 1 3.8745 -0.6803 0.8911 23 1 3.6584 -3.1504 -0.8892 24 1 3.6577 -3.1508 0.8907 25 1 5.9146 -3.6645 0.0013 26 1 5.9147 -2.1231 0.8909 27 1 5.6980 -2.4293 -2.1383 28 1 7.8923 -1.1840 -0.6564 29 1 7.3884 -1.1922 -3.2285 30 1 7.3282 -3.5613 -3.6921 31 1 8.6276 -3.9083 -2.5039 32 1 8.8596 -2.5154 -5.2283 33 1 9.8568 -3.8531 -4.5786 34 1 11.1322 -2.4218 -3.2476 35 1 10.6188 -1.1943 -4.4388 36 1 9.9365 -1.3471 -1.6231 37 1 9.4231 -0.1188 -2.8138 38 1 5.9148 0.0407 -0.3582 39 1 5.9144 0.0407 -2.1384 40 1 3.6581 -0.9867 -2.1381 41 1 3.6581 0.5547 -1.2485 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173325647.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:36 Heat of formation + Delta-G solvation = -50.339137 kcal Electronic energy + Delta-G solvation = -17533.317828 eV Core-core repulsion = 15024.484185 eV Total energy + Delta-G solvation = -2508.833643 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.24350 -38.65186 -35.56096 -33.96978 -31.65503 -30.73972 -29.54498 -27.58807 -25.48730 -23.57007 -22.25698 -21.31630 -21.06675 -20.33591 -18.76643 -17.29645 -16.83673 -16.43380 -15.83980 -15.19743 -15.01330 -14.87487 -14.64290 -14.42263 -14.17217 -13.71063 -13.57760 -13.19183 -12.85186 -12.41802 -12.18629 -12.07050 -11.96655 -11.94947 -11.83301 -11.79251 -11.64029 -11.56858 -11.28595 -11.18862 -10.92383 -10.75789 -10.59638 -9.24495 -8.30685 -6.33509 1.27087 1.32790 1.43898 2.30994 3.04759 3.20327 3.68362 3.82346 3.86584 4.00072 4.09189 4.29599 4.44147 4.48683 4.51621 4.61261 4.66682 4.69180 4.73980 4.76914 4.80751 4.85068 4.90352 4.98915 5.04994 5.11814 5.18517 5.20039 5.26188 5.33269 5.36173 5.38906 5.43450 5.52614 5.62344 5.71280 5.81480 6.22865 6.33520 6.56844 6.74650 7.31951 8.86632 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.041882 B = 0.005574 C = 0.005268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.384460 B = 5022.164856 C = 5314.027785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.009 3.991 3 Si 0.952 3.048 4 H -0.270 1.270 5 H -0.300 1.300 6 H -0.246 1.246 7 C -0.519 4.519 8 H 0.031 0.969 9 C 0.013 3.987 10 C -0.095 4.095 11 C -0.093 4.093 12 C 0.101 3.899 13 N -0.675 5.675 14 C 0.075 3.925 15 C -0.113 4.113 16 C -0.123 4.123 17 C -0.118 4.118 18 C -0.124 4.124 19 C -0.138 4.138 20 C -0.114 4.114 21 H 0.264 0.736 22 H 0.021 0.979 23 H 0.045 0.955 24 H 0.048 0.952 25 H 0.071 0.929 26 H 0.060 0.940 27 H 0.067 0.933 28 H 0.344 0.656 29 H 0.040 0.960 30 H 0.052 0.948 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.049 0.951 41 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.242 -2.280 -6.537 23.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.188 4.188 3 Si 0.780 3.220 4 H -0.196 1.196 5 H -0.228 1.228 6 H -0.170 1.170 7 C -0.557 4.557 8 H 0.049 0.951 9 C -0.005 4.005 10 C -0.133 4.133 11 C -0.131 4.131 12 C -0.009 4.009 13 N -0.305 5.305 14 C -0.035 4.035 15 C -0.151 4.151 16 C -0.161 4.161 17 C -0.156 4.156 18 C -0.162 4.162 19 C -0.178 4.178 20 C -0.152 4.152 21 H 0.073 0.927 22 H 0.040 0.960 23 H 0.063 0.937 24 H 0.067 0.933 25 H 0.090 0.910 26 H 0.079 0.921 27 H 0.085 0.915 28 H 0.163 0.837 29 H 0.058 0.942 30 H 0.071 0.929 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.068 0.932 41 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 22.175 -2.877 -6.519 23.291 hybrid contribution -0.993 1.735 -0.152 2.005 sum 21.182 -1.142 -6.671 22.237 Atomic orbital electron populations 1.70062 1.08249 1.27906 1.53184 1.25912 0.95411 1.03050 0.94379 0.85782 0.79169 0.78675 0.78409 1.19644 1.22787 1.16952 1.21500 0.92006 0.92786 1.49429 0.95090 1.19121 0.92958 0.94660 0.93799 1.21349 0.95177 0.96409 1.00376 1.21412 0.93699 1.00665 0.97358 1.21419 0.87196 0.93737 0.98531 1.60741 1.06177 1.53075 1.10509 1.22551 0.95393 0.96485 0.89079 1.22558 0.98486 0.96482 0.97582 1.22338 0.96638 0.99496 0.97656 1.22048 0.98075 0.97959 0.97488 1.22300 0.94145 0.99474 1.00302 1.22229 0.95507 0.98574 1.01449 1.21785 0.95033 0.98631 0.99778 0.92666 0.96046 0.93653 0.93343 0.91007 0.92121 0.91462 0.83708 0.94196 0.92920 0.91089 0.91793 0.90769 0.91115 0.91197 0.90726 0.91690 0.91882 0.92010 0.93188 0.95147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.00 13.96 21.45 0.30 -60.70 16 2 C 0.01 0.53 5.45 84.66 0.46 0.99 16 3 Si 0.95 46.11 24.37 68.60 1.67 47.78 16 4 H -0.27 -12.51 6.87 99.48 0.68 -11.83 16 5 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 6 H -0.25 -10.98 6.53 99.48 0.65 -10.33 16 7 C -0.52 -30.27 9.14 25.60 0.23 -30.04 16 8 H 0.03 2.00 7.99 -2.91 -0.02 1.97 16 9 C 0.01 0.62 1.70 -11.54 -0.02 0.60 16 10 C -0.09 -3.75 5.14 30.59 0.16 -3.59 16 11 C -0.09 -2.89 5.53 30.59 0.17 -2.73 16 12 C 0.10 2.92 2.33 44.92 0.10 3.02 16 13 N -0.68 -15.88 6.08 -463.35 -2.82 -18.70 16 14 C 0.07 1.58 2.95 46.11 0.14 1.71 16 15 C -0.11 -2.26 6.60 32.01 0.21 -2.05 16 16 C -0.12 -1.95 6.82 31.67 0.22 -1.73 16 17 C -0.12 -1.70 6.80 31.32 0.21 -1.49 16 18 C -0.12 -2.08 6.27 31.32 0.20 -1.88 16 19 C -0.14 -4.42 5.16 30.60 0.16 -4.26 16 20 C -0.11 -4.76 4.68 30.60 0.14 -4.62 16 21 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 22 H 0.02 1.01 7.20 -2.39 -0.02 1.00 16 23 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 24 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 25 H 0.07 2.04 8.14 -2.39 -0.02 2.03 16 26 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.07 2.06 7.86 -2.39 -0.02 2.04 16 28 H 0.34 7.44 8.07 -89.70 -0.72 6.72 16 29 H 0.04 0.94 7.21 -2.38 -0.02 0.92 16 30 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.07 0.92 8.14 -2.39 -0.02 0.91 16 35 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.07 1.22 7.93 -2.39 -0.02 1.20 16 37 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 38 H 0.06 1.95 8.13 -2.39 -0.02 1.93 16 39 H 0.06 1.79 7.50 -2.39 -0.02 1.77 16 40 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 41 H 0.03 1.34 3.27 -2.38 -0.01 1.34 16 Total: -1.00 -64.31 304.64 1.71 -62.60 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: 0.17 Total: 15.09 kcal Atomic # 6 Polarization: -48.45 SS G_CDS: 2.38 Total: -46.07 kcal Atomic # 7 Polarization: -76.89 SS G_CDS: -2.52 Total: -79.40 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 1.67 Total: 47.78 kcal Total: -64.31 1.71 -62.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173325647.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.262 kcal (2) G-P(sol) polarization free energy of solvation -64.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds