Wall clock time and date at job start Sun Mar 29 2020 22:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50698 * 120.00139 * 2 1 4 4 C 1.53002 * 109.47262 * 124.99710 * 3 2 1 5 5 C 1.52996 * 109.47329 * 179.97438 * 4 3 2 6 6 N 1.46896 * 109.47200 * 180.02562 * 5 4 3 7 7 C 1.46903 * 111.00418 * 179.97438 * 6 5 4 8 8 C 1.52998 * 109.47667 * 205.00504 * 7 6 5 9 9 C 1.52997 * 109.47232 * 180.02562 * 8 7 6 10 10 C 1.52992 * 109.47296 * 59.99748 * 9 8 7 11 11 C 1.50700 * 109.47257 * 59.99902 * 10 9 8 12 12 H 1.07999 * 119.99988 * 359.97438 * 11 10 9 13 13 C 1.37885 * 120.00047 * 180.02562 * 11 10 9 14 14 N 1.31518 * 119.99792 * 359.72305 * 13 11 10 15 15 Si 1.86795 * 120.00009 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47163 * 59.99902 * 15 13 11 17 17 H 1.48495 * 109.47159 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.47290 * 299.99897 * 15 13 11 19 19 C 1.53003 * 109.47195 * 299.99941 * 10 9 8 20 20 C 1.52994 * 109.46903 * 84.99606 * 7 6 5 21 21 H 1.07995 * 120.00257 * 180.02562 * 1 2 3 22 22 H 1.08006 * 119.99713 * 359.97438 * 1 2 3 23 23 H 1.08005 * 119.99484 * 179.97438 * 2 1 3 24 24 H 1.09003 * 109.47111 * 5.00174 * 3 2 1 25 25 H 1.08996 * 109.47213 * 244.99507 * 3 2 1 26 26 H 1.09009 * 109.46911 * 59.99797 * 4 3 2 27 27 H 1.09002 * 109.47057 * 300.00397 * 4 3 2 28 28 H 1.08995 * 109.46990 * 60.00195 * 5 4 3 29 29 H 1.09002 * 109.47484 * 300.00269 * 5 4 3 30 30 H 1.00896 * 111.00418 * 303.95553 * 6 5 4 31 31 H 1.09005 * 109.46638 * 325.00521 * 7 6 5 32 32 H 1.08998 * 109.46987 * 59.99359 * 8 7 6 33 33 H 1.09005 * 109.46648 * 300.00005 * 8 7 6 34 34 H 1.08996 * 109.46678 * 299.99615 * 9 8 7 35 35 H 1.09004 * 109.46869 * 179.97438 * 9 8 7 36 36 H 1.08997 * 109.47279 * 180.02562 * 10 9 8 37 37 H 0.97000 * 119.99468 * 179.97438 * 14 13 11 38 38 H 1.08998 * 109.47453 * 180.02562 * 19 10 9 39 39 H 1.08996 * 109.47248 * 300.00419 * 19 10 9 40 40 H 1.08999 * 109.47824 * 300.01002 * 20 7 6 41 41 H 1.09005 * 109.46726 * 60.00969 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1817 5 6 3.8005 2.6578 1.1813 6 7 4.7337 2.6844 2.3155 7 6 5.4884 3.9444 2.3470 8 6 6.8144 3.7266 3.0785 9 6 7.6000 5.0391 3.1118 10 6 6.7823 6.1045 3.8445 11 6 6.5090 5.6468 5.2540 12 1 6.8809 4.6913 5.5932 13 6 5.7831 6.4474 6.1104 14 7 5.3339 7.6130 5.6987 15 14 5.4449 5.8804 7.8578 16 1 6.7322 5.6701 8.5678 17 1 4.6512 6.9145 8.5689 18 1 4.6832 4.6060 7.8260 19 6 5.4563 6.3223 3.1129 20 6 4.6708 5.0103 3.0792 21 1 -0.5400 -0.9352 0.0004 22 1 -0.5400 0.9354 0.0004 23 1 1.8500 -0.9354 0.0004 24 1 1.3586 2.1316 0.0896 25 1 2.6214 1.4025 -0.9313 26 1 3.7400 0.5064 1.0921 27 1 2.4772 1.2356 2.1130 28 1 3.0959 3.4846 1.2706 29 1 4.3584 2.7549 0.2499 30 1 4.2484 2.5314 3.1867 31 1 5.6860 4.2750 1.3272 32 1 7.3967 2.9672 2.5568 33 1 6.6167 3.3960 4.0982 34 1 7.7976 5.3701 2.0923 35 1 8.5445 4.8840 3.6334 36 1 7.3418 7.0396 3.8678 37 1 4.8230 8.1760 6.3010 38 1 4.8739 7.0817 3.6346 39 1 5.6539 6.6533 2.0934 40 1 3.7262 5.1654 2.5581 41 1 4.4732 4.6797 4.0989 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173329498.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:24:44 Heat of formation + Delta-G solvation = -16.701232 kcal Electronic energy + Delta-G solvation = -17111.322541 eV Core-core repulsion = 14603.947547 eV Total energy + Delta-G solvation = -2507.374994 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.28739 -36.41167 -34.49489 -32.28426 -30.79812 -29.46902 -27.87933 -25.13776 -24.03736 -21.57624 -21.19645 -20.53556 -19.87998 -18.65226 -15.94881 -15.72312 -15.12543 -14.95000 -14.49244 -14.03348 -13.67612 -13.48874 -13.09890 -12.64124 -12.46860 -12.11569 -11.76018 -11.53311 -11.31302 -11.23130 -10.96913 -10.86343 -10.72894 -10.66371 -10.53761 -10.27103 -10.02777 -9.61882 -9.48986 -9.10249 -8.93907 -8.65466 -8.26584 -7.77302 -5.93091 -3.97179 2.12040 3.33104 3.38287 3.40992 4.45847 4.47919 4.82849 4.90592 5.14223 5.36771 5.37582 5.40579 5.57555 5.65470 5.73612 5.79314 5.88050 5.91931 6.10854 6.21845 6.27185 6.37927 6.45549 6.51125 6.55418 6.58808 6.62414 6.81202 6.83441 6.92997 7.16600 7.24142 7.38152 7.54497 7.66384 7.78337 7.86372 7.99399 8.19892 8.53811 9.05495 9.65681 11.12769 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.027817 B = 0.005071 C = 0.004683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.324698 B = 5520.378464 C = 5977.793457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.148 4.148 3 C -0.095 4.095 4 C -0.112 4.112 5 C 0.059 3.941 6 N -0.690 5.690 7 C 0.093 3.907 8 C -0.091 4.091 9 C -0.107 4.107 10 C 0.044 3.956 11 C -0.500 4.500 12 H 0.055 0.945 13 C 0.060 3.940 14 N -0.892 5.892 15 Si 0.884 3.116 16 H -0.278 1.278 17 H -0.289 1.289 18 H -0.278 1.278 19 C -0.104 4.104 20 C -0.126 4.126 21 H 0.094 0.906 22 H 0.095 0.905 23 H 0.107 0.893 24 H 0.065 0.935 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.060 0.940 28 H 0.027 0.973 29 H 0.066 0.934 30 H 0.338 0.662 31 H 0.059 0.941 32 H 0.041 0.959 33 H 0.068 0.932 34 H 0.031 0.969 35 H 0.046 0.954 36 H 0.023 0.977 37 H 0.258 0.742 38 H 0.089 0.911 39 H 0.012 0.988 40 H 0.027 0.973 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.732 -10.563 -9.579 15.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.166 4.166 3 C -0.133 4.133 4 C -0.150 4.150 5 C -0.071 4.071 6 N -0.320 5.320 7 C -0.016 4.016 8 C -0.130 4.130 9 C -0.146 4.146 10 C 0.025 3.975 11 C -0.538 4.538 12 H 0.073 0.927 13 C -0.140 4.140 14 N -0.532 5.532 15 Si 0.713 3.287 16 H -0.204 1.204 17 H -0.215 1.215 18 H -0.204 1.204 19 C -0.143 4.143 20 C -0.165 4.165 21 H 0.113 0.887 22 H 0.113 0.887 23 H 0.125 0.875 24 H 0.084 0.916 25 H 0.090 0.910 26 H 0.088 0.912 27 H 0.079 0.921 28 H 0.045 0.955 29 H 0.084 0.916 30 H 0.156 0.844 31 H 0.078 0.922 32 H 0.060 0.940 33 H 0.087 0.913 34 H 0.050 0.950 35 H 0.065 0.935 36 H 0.041 0.959 37 H 0.068 0.932 38 H 0.107 0.893 39 H 0.031 0.969 40 H 0.045 0.955 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.334 -10.753 -9.850 15.528 hybrid contribution -1.043 0.374 1.317 1.721 sum -6.378 -10.379 -8.533 14.874 Atomic orbital electron populations 1.23840 0.96031 1.01687 1.02322 1.23008 0.95996 0.98686 0.98883 1.20755 0.98242 0.95137 0.99134 1.21512 0.97395 0.98362 0.97739 1.21941 0.94080 0.95829 0.95253 1.60697 1.28917 1.36357 1.06018 1.21580 0.94327 0.87157 0.98523 1.21339 0.94246 0.96893 1.00471 1.21561 0.98427 0.96437 0.98136 1.18682 0.91709 0.93436 0.93657 1.21144 1.32975 1.03621 0.96082 0.92686 1.24946 0.96142 0.94963 0.97982 1.69869 1.37395 1.10417 1.35513 0.86785 0.78293 0.78259 0.85413 1.20384 1.21485 1.20406 1.21444 0.99900 0.96522 0.96405 1.22004 0.96533 0.97525 1.00409 0.88735 0.88676 0.87468 0.91631 0.90963 0.91158 0.92119 0.95488 0.91592 0.84402 0.92224 0.94033 0.91338 0.94985 0.93498 0.95909 0.93183 0.89298 0.96936 0.95459 0.91003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.78 14.32 29.01 0.42 -1.36 16 2 C -0.15 -1.38 9.52 -36.03 -0.34 -1.72 16 3 C -0.09 -0.94 5.66 -27.88 -0.16 -1.10 16 4 C -0.11 -1.28 5.46 -26.73 -0.15 -1.42 16 5 C 0.06 0.80 5.48 -3.83 -0.02 0.78 16 6 N -0.69 -11.04 6.25 -106.73 -0.67 -11.71 16 7 C 0.09 1.71 2.47 -67.71 -0.17 1.55 16 8 C -0.09 -1.78 5.30 -26.73 -0.14 -1.92 16 9 C -0.11 -2.26 5.41 -26.74 -0.14 -2.40 16 10 C 0.04 1.07 2.58 -91.77 -0.24 0.84 16 11 C -0.50 -13.31 6.61 -34.44 -0.23 -13.54 16 12 H 0.05 1.46 6.71 -52.49 -0.35 1.11 16 13 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 14 N -0.89 -25.31 11.33 55.43 0.63 -24.69 16 15 Si 0.88 21.18 29.54 -169.99 -5.02 16.16 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 19 C -0.10 -2.45 5.23 -26.75 -0.14 -2.59 16 20 C -0.13 -2.62 4.95 -26.76 -0.13 -2.75 16 21 H 0.09 0.72 8.06 -52.49 -0.42 0.29 16 22 H 0.09 0.81 7.84 -52.48 -0.41 0.40 16 23 H 0.11 0.92 8.06 -52.48 -0.42 0.49 16 24 H 0.06 0.65 7.79 -51.93 -0.40 0.25 16 25 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.07 0.81 8.14 -51.92 -0.42 0.38 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.03 0.38 7.44 -51.93 -0.39 0.00 16 29 H 0.07 0.88 8.05 -51.93 -0.42 0.47 16 30 H 0.34 5.44 8.47 -39.29 -0.33 5.10 16 31 H 0.06 1.09 7.80 -51.93 -0.40 0.69 16 32 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.07 1.44 6.62 -51.93 -0.34 1.10 16 34 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 38 H 0.09 2.35 6.08 -51.93 -0.32 2.04 16 39 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 40 H 0.03 0.53 7.45 -51.93 -0.39 0.14 16 41 H 0.07 1.65 7.20 -51.93 -0.37 1.28 16 LS Contribution 317.75 15.07 4.79 4.79 Total: -1.00 -27.08 317.75 -9.30 -36.38 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -7.49 Total: 3.18 kcal Atomic # 6 Polarization: -22.57 SS G_CDS: -1.54 Total: -24.11 kcal Atomic # 7 Polarization: -36.36 SS G_CDS: -0.04 Total: -36.40 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -27.08 -9.30 -36.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173329498.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.681 kcal (2) G-P(sol) polarization free energy of solvation -27.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds