Wall clock time and date at job start Sun Mar 29 2020 22:12:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 115.55881 * 2 1 4 4 C 1.52994 * 117.50223 * 214.31054 * 2 1 3 5 5 C 1.52994 * 60.00099 * 252.50620 * 4 2 1 6 6 H 1.08999 * 117.52414 * 252.51860 * 5 4 2 7 7 N 1.46911 * 117.49598 * 107.48761 * 5 4 2 8 8 C 1.46903 * 110.99835 * 136.38034 * 7 5 4 9 9 C 1.53000 * 109.46898 * 204.99947 * 8 7 5 10 10 C 1.52995 * 109.47200 * 180.02562 * 9 8 7 11 11 C 1.53001 * 109.47124 * 60.00113 * 10 9 8 12 12 C 1.50694 * 109.47168 * 60.00026 * 11 10 9 13 13 H 1.08000 * 120.00563 * 0.02562 * 12 11 10 14 14 C 1.37885 * 119.99902 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99913 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99766 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.46985 * 179.97438 * 16 14 12 18 18 H 1.48494 * 109.47276 * 299.99832 * 16 14 12 19 19 H 1.48498 * 109.47150 * 60.00043 * 16 14 12 20 20 C 1.53000 * 109.46989 * 300.00016 * 11 10 9 21 21 C 1.53001 * 109.46909 * 84.99983 * 8 7 5 22 22 H 1.08999 * 109.47415 * 274.30635 * 1 2 3 23 23 H 1.08995 * 109.47497 * 34.31385 * 1 2 3 24 24 H 1.09007 * 109.46809 * 154.31096 * 1 2 3 25 25 H 1.09000 * 109.47152 * 205.68739 * 3 2 1 26 26 H 1.08998 * 109.47250 * 325.69201 * 3 2 1 27 27 H 1.09000 * 109.47294 * 85.68938 * 3 2 1 28 28 H 1.09004 * 117.49947 * 145.02128 * 4 2 1 29 29 H 1.08995 * 117.50143 * 359.97438 * 4 2 1 30 30 H 1.00901 * 110.99941 * 260.33491 * 7 5 4 31 31 H 1.08998 * 109.47002 * 324.99860 * 8 7 5 32 32 H 1.08997 * 109.47359 * 59.99533 * 9 8 7 33 33 H 1.09007 * 109.46901 * 300.00289 * 9 8 7 34 34 H 1.08998 * 109.46811 * 299.99981 * 10 9 8 35 35 H 1.09002 * 109.47384 * 180.02562 * 10 9 8 36 36 H 1.09003 * 109.46836 * 180.02562 * 11 10 9 37 37 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 38 38 H 1.08997 * 109.47359 * 180.02562 * 20 11 10 39 39 H 1.09007 * 109.47356 * 300.00069 * 20 11 10 40 40 H 1.08994 * 109.47397 * 299.99613 * 21 8 7 41 41 H 1.08998 * 109.47388 * 60.00114 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1901 1.3803 0.0000 4 6 2.2365 -1.1209 -0.7649 5 6 2.2365 -1.1209 0.7650 6 1 3.1713 -0.8749 1.2687 7 7 1.3939 -2.1149 1.4433 8 6 2.1101 -2.7332 2.5671 9 6 1.5219 -4.1177 2.8468 10 6 2.2673 -4.7614 4.0176 11 6 2.1186 -3.8832 5.2616 12 6 0.6586 -3.7479 5.6093 13 1 -0.0886 -4.2393 5.0038 14 6 0.2766 -2.9965 6.7004 15 7 1.1864 -2.3984 7.4381 16 14 -1.5333 -2.8281 7.1310 17 1 -1.6777 -1.9758 8.3385 18 1 -2.2565 -2.2034 5.9943 19 1 -2.1046 -4.1715 7.4027 20 6 2.7068 -2.4988 4.9819 21 6 1.9619 -1.8552 3.8113 22 1 -0.3634 0.0772 1.0247 23 1 -0.3634 0.8488 -0.5793 24 1 -0.3633 -0.9262 -0.4455 25 1 3.1823 1.3086 -0.4455 26 1 1.5811 2.0743 -0.5792 27 1 2.2772 1.7415 1.0247 28 1 3.1716 -0.8750 -1.2682 29 1 1.6114 -1.8587 -1.2679 30 1 0.5254 -1.7034 1.7506 31 1 3.1660 -2.8312 2.3151 32 1 1.6273 -4.7431 1.9604 33 1 0.4659 -4.0196 3.0987 34 1 3.3234 -4.8593 3.7660 35 1 1.8486 -5.7479 4.2166 36 1 2.6501 -4.3417 6.0956 37 1 0.9176 -1.8695 8.2055 38 1 2.6013 -1.8733 5.8682 39 1 3.7629 -2.5967 4.7304 40 1 2.3809 -0.8689 3.6120 41 1 0.9060 -1.7572 4.0632 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173329913.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:49 Heat of formation + Delta-G solvation = -5.146902 kcal Electronic energy + Delta-G solvation = -17740.211392 eV Core-core repulsion = 15233.337431 eV Total energy + Delta-G solvation = -2506.873961 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.94620 -37.42068 -33.57442 -31.65899 -29.49512 -28.99383 -27.72743 -26.92783 -24.55403 -21.63440 -21.13277 -20.46652 -19.14347 -18.39129 -15.88134 -15.49913 -15.14305 -14.56152 -14.07845 -13.78349 -13.31572 -13.19071 -12.88805 -12.59104 -12.52751 -12.25972 -11.91219 -11.52687 -11.33140 -11.29447 -11.12838 -10.96632 -10.85157 -10.59759 -10.41592 -10.16104 -10.03873 -9.65169 -9.49404 -9.07146 -8.89436 -8.64481 -8.26565 -7.71373 -5.93403 -3.97510 3.32544 3.37791 3.40448 3.88015 4.35283 4.46860 4.84379 4.96114 5.14380 5.36760 5.38996 5.60345 5.64086 5.67939 5.81686 5.88393 5.93116 5.97897 5.99487 6.09410 6.13227 6.19227 6.37593 6.40957 6.49716 6.56776 6.58593 6.80752 6.82677 6.92549 7.16471 7.23313 7.38321 7.54810 7.66742 7.77685 7.84093 7.98942 8.19817 8.53390 9.05099 9.65322 11.12403 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.026092 B = 0.006815 C = 0.006201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.888235 B = 4107.780411 C = 4514.193438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.148 4.148 3 C -0.113 4.113 4 C -0.166 4.166 5 C 0.035 3.965 6 H 0.095 0.905 7 N -0.657 5.657 8 C 0.095 3.905 9 C -0.091 4.091 10 C -0.107 4.107 11 C 0.043 3.957 12 C -0.499 4.499 13 H 0.055 0.945 14 C 0.060 3.940 15 N -0.892 5.892 16 Si 0.884 3.116 17 H -0.289 1.289 18 H -0.278 1.278 19 H -0.278 1.278 20 C -0.104 4.104 21 C -0.125 4.125 22 H 0.058 0.942 23 H 0.055 0.945 24 H 0.062 0.938 25 H 0.054 0.946 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.087 0.913 29 H 0.095 0.905 30 H 0.342 0.658 31 H 0.061 0.939 32 H 0.041 0.959 33 H 0.068 0.932 34 H 0.032 0.968 35 H 0.046 0.954 36 H 0.023 0.977 37 H 0.258 0.742 38 H 0.089 0.911 39 H 0.012 0.988 40 H 0.027 0.973 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.458 4.581 -12.717 13.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.149 4.149 3 C -0.171 4.171 4 C -0.205 4.205 5 C -0.076 4.076 6 H 0.113 0.887 7 N -0.287 5.287 8 C -0.014 4.014 9 C -0.129 4.129 10 C -0.145 4.145 11 C 0.025 3.975 12 C -0.537 4.537 13 H 0.073 0.927 14 C -0.140 4.140 15 N -0.532 5.532 16 Si 0.712 3.288 17 H -0.215 1.215 18 H -0.204 1.204 19 H -0.204 1.204 20 C -0.143 4.143 21 C -0.164 4.164 22 H 0.076 0.924 23 H 0.074 0.926 24 H 0.081 0.919 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.105 0.895 29 H 0.113 0.887 30 H 0.162 0.838 31 H 0.080 0.920 32 H 0.060 0.940 33 H 0.086 0.914 34 H 0.050 0.950 35 H 0.065 0.935 36 H 0.041 0.959 37 H 0.068 0.932 38 H 0.108 0.892 39 H 0.031 0.969 40 H 0.046 0.954 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.608 4.176 -12.984 13.733 hybrid contribution -0.966 0.914 0.958 1.638 sum 0.642 5.090 -12.026 13.075 Atomic orbital electron populations 1.21237 0.92126 1.01873 1.01755 1.21855 0.95144 0.91293 1.06621 1.21339 0.99692 0.94318 1.01703 1.23386 1.01563 1.00366 0.95153 1.22518 0.97863 0.94299 0.92962 0.88730 1.60432 1.06690 1.31557 1.30013 1.21651 0.96459 0.95035 0.88231 1.21334 1.01078 0.93946 0.96583 1.21558 0.97076 0.98960 0.96931 1.18689 0.96174 0.91120 0.91542 1.21128 0.92014 1.29796 1.10783 0.92721 1.24945 0.96788 0.95963 0.96344 1.69864 1.32405 1.33291 1.17628 0.86791 0.86241 0.78006 0.77750 1.21483 1.20415 1.20389 1.21451 0.94159 1.00767 0.97926 1.22023 1.02456 0.96053 0.95838 0.92352 0.92552 0.91925 0.92694 0.92415 0.92408 0.89470 0.88655 0.83789 0.92027 0.93979 0.91353 0.94950 0.93480 0.95890 0.93177 0.89240 0.96932 0.95391 0.91044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.32 8.79 37.16 0.33 -0.99 16 2 C -0.15 -1.81 2.70 -154.51 -0.42 -2.23 16 3 C -0.11 -1.21 9.85 37.16 0.37 -0.85 16 4 C -0.17 -2.06 9.75 -26.74 -0.26 -2.32 16 5 C 0.03 0.50 5.67 -67.71 -0.38 0.11 16 6 H 0.09 1.41 7.77 -51.93 -0.40 1.01 16 7 N -0.66 -10.66 6.31 -99.74 -0.63 -11.29 16 8 C 0.10 1.75 2.37 -67.71 -0.16 1.59 16 9 C -0.09 -1.78 5.30 -26.73 -0.14 -1.92 16 10 C -0.11 -2.25 5.41 -26.73 -0.14 -2.39 16 11 C 0.04 1.06 2.59 -91.77 -0.24 0.82 16 12 C -0.50 -13.22 6.61 -34.44 -0.23 -13.45 16 13 H 0.05 1.44 6.71 -52.49 -0.35 1.09 16 14 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 15 N -0.89 -25.26 11.32 55.43 0.63 -24.64 16 16 Si 0.88 21.14 29.54 -169.99 -5.02 16.12 16 17 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 C -0.10 -2.44 5.23 -26.76 -0.14 -2.58 16 21 C -0.12 -2.59 4.95 -26.76 -0.13 -2.72 16 22 H 0.06 0.72 7.59 -51.93 -0.39 0.33 16 23 H 0.06 0.58 7.92 -51.93 -0.41 0.16 16 24 H 0.06 0.74 7.90 -51.93 -0.41 0.33 16 25 H 0.05 0.54 7.90 -51.93 -0.41 0.13 16 26 H 0.06 0.55 7.92 -51.93 -0.41 0.14 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.09 0.97 8.05 -51.93 -0.42 0.55 16 29 H 0.10 1.21 8.05 -51.93 -0.42 0.80 16 30 H 0.34 5.60 6.94 -39.29 -0.27 5.32 16 31 H 0.06 1.14 7.73 -51.93 -0.40 0.74 16 32 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.07 1.43 6.62 -51.93 -0.34 1.09 16 34 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 38 H 0.09 2.36 6.07 -51.93 -0.32 2.05 16 39 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 40 H 0.03 0.54 8.07 -51.93 -0.42 0.13 16 41 H 0.07 1.64 7.20 -51.93 -0.37 1.27 16 LS Contribution 312.61 15.07 4.71 4.71 Total: -1.00 -26.83 312.61 -9.39 -36.22 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -7.43 Total: 4.27 kcal Atomic # 6 Polarization: -23.75 SS G_CDS: -1.65 Total: -25.40 kcal Atomic # 7 Polarization: -35.92 SS G_CDS: 0.00 Total: -35.92 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -26.83 -9.39 -36.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173329913.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.070 kcal (2) G-P(sol) polarization free energy of solvation -26.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds