Wall clock time and date at job start Sun Mar 29 2020 22:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 115.55881 * 2 1 4 4 C 1.52994 * 117.50223 * 214.31054 * 2 1 3 5 5 C 1.52994 * 60.00099 * 252.50620 * 4 2 1 6 6 H 1.08999 * 117.52414 * 252.51860 * 5 4 2 7 7 N 1.46911 * 117.49598 * 107.48761 * 5 4 2 8 8 C 1.46903 * 110.99835 * 136.38034 * 7 5 4 9 9 C 1.53000 * 109.46898 * 204.99947 * 8 7 5 10 10 C 1.52995 * 109.47200 * 180.02562 * 9 8 7 11 11 C 1.53001 * 109.47124 * 60.00113 * 10 9 8 12 12 C 1.50694 * 109.47168 * 60.00026 * 11 10 9 13 13 H 1.08000 * 120.00563 * 0.02562 * 12 11 10 14 14 C 1.37885 * 119.99902 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99913 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99766 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.46985 * 179.97438 * 16 14 12 18 18 H 1.48494 * 109.47276 * 299.99832 * 16 14 12 19 19 H 1.48498 * 109.47150 * 60.00043 * 16 14 12 20 20 C 1.53000 * 109.46989 * 300.00016 * 11 10 9 21 21 C 1.53001 * 109.46909 * 84.99983 * 8 7 5 22 22 H 1.08999 * 109.47415 * 274.30635 * 1 2 3 23 23 H 1.08995 * 109.47497 * 34.31385 * 1 2 3 24 24 H 1.09007 * 109.46809 * 154.31096 * 1 2 3 25 25 H 1.09000 * 109.47152 * 205.68739 * 3 2 1 26 26 H 1.08998 * 109.47250 * 325.69201 * 3 2 1 27 27 H 1.09000 * 109.47294 * 85.68938 * 3 2 1 28 28 H 1.09004 * 117.49947 * 145.02128 * 4 2 1 29 29 H 1.08995 * 117.50143 * 359.97438 * 4 2 1 30 30 H 1.00901 * 110.99941 * 260.33491 * 7 5 4 31 31 H 1.08998 * 109.47002 * 324.99860 * 8 7 5 32 32 H 1.08997 * 109.47359 * 59.99533 * 9 8 7 33 33 H 1.09007 * 109.46901 * 300.00289 * 9 8 7 34 34 H 1.08998 * 109.46811 * 299.99981 * 10 9 8 35 35 H 1.09002 * 109.47384 * 180.02562 * 10 9 8 36 36 H 1.09003 * 109.46836 * 180.02562 * 11 10 9 37 37 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 38 38 H 1.08997 * 109.47359 * 180.02562 * 20 11 10 39 39 H 1.09007 * 109.47356 * 300.00069 * 20 11 10 40 40 H 1.08994 * 109.47397 * 299.99613 * 21 8 7 41 41 H 1.08998 * 109.47388 * 60.00114 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1901 1.3803 0.0000 4 6 2.2365 -1.1209 -0.7649 5 6 2.2365 -1.1209 0.7650 6 1 3.1713 -0.8749 1.2687 7 7 1.3939 -2.1149 1.4433 8 6 2.1101 -2.7332 2.5671 9 6 1.5219 -4.1177 2.8468 10 6 2.2673 -4.7614 4.0176 11 6 2.1186 -3.8832 5.2616 12 6 0.6586 -3.7479 5.6093 13 1 -0.0886 -4.2393 5.0038 14 6 0.2766 -2.9965 6.7004 15 7 1.1864 -2.3984 7.4381 16 14 -1.5333 -2.8281 7.1310 17 1 -1.6777 -1.9758 8.3385 18 1 -2.2565 -2.2034 5.9943 19 1 -2.1046 -4.1715 7.4027 20 6 2.7068 -2.4988 4.9819 21 6 1.9619 -1.8552 3.8113 22 1 -0.3634 0.0772 1.0247 23 1 -0.3634 0.8488 -0.5793 24 1 -0.3633 -0.9262 -0.4455 25 1 3.1823 1.3086 -0.4455 26 1 1.5811 2.0743 -0.5792 27 1 2.2772 1.7415 1.0247 28 1 3.1716 -0.8750 -1.2682 29 1 1.6114 -1.8587 -1.2679 30 1 0.5254 -1.7034 1.7506 31 1 3.1660 -2.8312 2.3151 32 1 1.6273 -4.7431 1.9604 33 1 0.4659 -4.0196 3.0987 34 1 3.3234 -4.8593 3.7660 35 1 1.8486 -5.7479 4.2166 36 1 2.6501 -4.3417 6.0956 37 1 0.9176 -1.8695 8.2055 38 1 2.6013 -1.8733 5.8682 39 1 3.7629 -2.5967 4.7304 40 1 2.3809 -0.8689 3.6120 41 1 0.9060 -1.7572 4.0632 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173329913.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:48 Heat of formation + Delta-G solvation = -18.900735 kcal Electronic energy + Delta-G solvation = -17740.807803 eV Core-core repulsion = 15233.337431 eV Total energy + Delta-G solvation = -2507.470371 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.24057 -38.87863 -35.24599 -33.45504 -31.23425 -30.18819 -28.91610 -28.13267 -26.50351 -23.23567 -22.57596 -21.87513 -20.67376 -19.72369 -17.77413 -16.85528 -16.64954 -16.29633 -15.45154 -15.06555 -14.83232 -14.59385 -14.52176 -13.96271 -13.71210 -13.35577 -13.18393 -13.04333 -12.90395 -12.79186 -12.64036 -12.54409 -12.42151 -12.19241 -12.03298 -11.76722 -11.54914 -11.31261 -11.04272 -10.69262 -10.53926 -10.45558 -10.25753 -9.04751 -8.02459 -6.12528 1.41396 1.42011 1.48852 2.45683 2.87227 3.13744 3.25385 3.87767 3.95419 4.09213 4.16481 4.24489 4.32622 4.52155 4.61752 4.71657 4.74130 4.77431 4.86063 4.87866 4.96964 4.99904 5.04156 5.07124 5.08920 5.14274 5.18382 5.26347 5.29933 5.45988 5.50266 5.55338 5.61923 5.65469 5.73651 5.96227 6.22574 6.29403 6.45798 6.51379 6.97384 7.53147 9.02026 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.026092 B = 0.006815 C = 0.006201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.888235 B = 4107.780411 C = 4514.193438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.141 4.141 3 C -0.113 4.113 4 C -0.153 4.153 5 C 0.008 3.992 6 H 0.089 0.911 7 N -0.653 5.653 8 C 0.108 3.892 9 C -0.084 4.084 10 C -0.102 4.102 11 C 0.038 3.962 12 C -0.504 4.504 13 H 0.053 0.947 14 C 0.013 3.987 15 N -0.921 5.921 16 Si 0.941 3.059 17 H -0.289 1.289 18 H -0.271 1.271 19 H -0.274 1.274 20 C -0.100 4.100 21 C -0.112 4.112 22 H 0.047 0.953 23 H 0.073 0.927 24 H 0.059 0.941 25 H 0.064 0.936 26 H 0.072 0.928 27 H 0.050 0.950 28 H 0.104 0.896 29 H 0.093 0.907 30 H 0.339 0.661 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.050 0.950 34 H 0.049 0.951 35 H 0.047 0.953 36 H -0.012 1.012 37 H 0.256 0.744 38 H 0.055 0.945 39 H 0.024 0.976 40 H 0.037 0.963 41 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.130 5.011 -14.848 15.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.142 4.142 3 C -0.170 4.170 4 C -0.191 4.191 5 C -0.103 4.103 6 H 0.107 0.893 7 N -0.282 5.282 8 C -0.002 4.002 9 C -0.122 4.122 10 C -0.140 4.140 11 C 0.019 3.981 12 C -0.542 4.542 13 H 0.071 0.929 14 C -0.185 4.185 15 N -0.561 5.561 16 Si 0.767 3.233 17 H -0.215 1.215 18 H -0.197 1.197 19 H -0.199 1.199 20 C -0.139 4.139 21 C -0.151 4.151 22 H 0.066 0.934 23 H 0.092 0.908 24 H 0.078 0.922 25 H 0.083 0.917 26 H 0.090 0.910 27 H 0.069 0.931 28 H 0.122 0.878 29 H 0.112 0.888 30 H 0.159 0.841 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.006 0.994 37 H 0.065 0.935 38 H 0.074 0.926 39 H 0.043 0.957 40 H 0.055 0.945 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.278 4.603 -15.135 15.871 hybrid contribution -0.825 0.779 1.621 1.978 sum 0.453 5.382 -13.514 14.554 Atomic orbital electron populations 1.21255 0.91840 1.02530 1.01412 1.21980 0.95441 0.91732 1.05039 1.21361 1.00414 0.93554 1.01657 1.23414 1.02215 1.00012 0.93428 1.22591 0.97920 0.95674 0.94066 0.89294 1.60426 1.06620 1.32548 1.28594 1.21432 0.96958 0.94066 0.87730 1.21247 0.99641 0.94832 0.96512 1.21467 0.98486 0.98225 0.95805 1.18695 0.94913 0.92312 0.92168 1.21375 0.92980 1.29245 1.10600 0.92861 1.25633 1.00432 0.95928 0.96506 1.70014 1.34065 1.34031 1.18002 0.85876 0.81892 0.77996 0.77506 1.21511 1.19653 1.19927 1.21317 0.95237 0.99644 0.97724 1.21866 1.00255 0.96938 0.96012 0.93358 0.90809 0.92219 0.91741 0.90952 0.93131 0.87807 0.88846 0.84113 0.91389 0.91934 0.93150 0.93269 0.93466 0.99433 0.93451 0.92621 0.95689 0.94473 0.93617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.42 8.79 71.98 0.63 -1.78 16 2 C -0.14 -3.11 2.70 -52.18 -0.14 -3.25 16 3 C -0.11 -2.11 9.85 71.98 0.71 -1.41 16 4 C -0.15 -3.35 9.75 30.59 0.30 -3.05 16 5 C 0.01 0.22 5.67 44.91 0.25 0.47 16 6 H 0.09 2.49 7.77 -2.39 -0.02 2.47 16 7 N -0.65 -20.13 6.31 -469.45 -2.96 -23.09 16 8 C 0.11 3.82 2.37 44.92 0.11 3.92 16 9 C -0.08 -3.16 5.30 30.59 0.16 -2.99 16 10 C -0.10 -4.18 5.41 30.59 0.17 -4.02 16 11 C 0.04 1.88 2.59 -11.54 -0.03 1.85 16 12 C -0.50 -27.07 6.61 25.60 0.17 -26.90 16 13 H 0.05 2.83 6.71 -2.91 -0.02 2.81 16 14 C 0.01 0.70 5.30 84.66 0.45 1.14 16 15 N -0.92 -53.47 11.32 21.45 0.24 -53.22 16 16 Si 0.94 43.72 29.54 68.60 2.03 45.74 16 17 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 18 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 19 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 20 C -0.10 -4.77 5.23 30.58 0.16 -4.61 16 21 C -0.11 -4.61 4.95 30.58 0.15 -4.46 16 22 H 0.05 1.12 7.59 -2.39 -0.02 1.11 16 23 H 0.07 1.31 7.92 -2.39 -0.02 1.29 16 24 H 0.06 1.30 7.90 -2.38 -0.02 1.28 16 25 H 0.06 1.09 7.90 -2.39 -0.02 1.07 16 26 H 0.07 1.15 7.92 -2.39 -0.02 1.13 16 27 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.10 1.94 8.05 -2.39 -0.02 1.92 16 29 H 0.09 2.12 8.05 -2.39 -0.02 2.10 16 30 H 0.34 10.75 6.94 -89.69 -0.62 10.12 16 31 H 0.07 2.36 7.73 -2.39 -0.02 2.34 16 32 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.05 2.07 6.62 -2.38 -0.02 2.05 16 34 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 36 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 37 H 0.26 14.36 8.31 -92.71 -0.77 13.58 16 38 H 0.06 3.03 6.07 -2.39 -0.01 3.01 16 39 H 0.02 1.08 8.14 -2.38 -0.02 1.06 16 40 H 0.04 1.44 8.07 -2.39 -0.02 1.42 16 41 H 0.05 2.12 7.20 -2.39 -0.02 2.10 16 Total: -1.00 -57.40 312.61 2.75 -54.65 By element: Atomic # 1 Polarization: 20.66 SS G_CDS: 0.36 Total: 21.01 kcal Atomic # 6 Polarization: -48.18 SS G_CDS: 3.09 Total: -45.09 kcal Atomic # 7 Polarization: -73.59 SS G_CDS: -2.72 Total: -76.31 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.74 kcal Total: -57.40 2.75 -54.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173329913.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.747 kcal (2) G-P(sol) polarization free energy of solvation -57.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds