Wall clock time and date at job start Sun Mar 29 2020 21:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99940 * 2 1 4 4 H 1.48500 * 109.47389 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47057 * 300.00015 * 3 2 1 6 6 H 1.48495 * 109.47216 * 59.99887 * 3 2 1 7 7 C 1.37879 * 120.00409 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00516 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99661 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46953 * 60.00040 * 9 7 2 11 11 C 1.52997 * 109.47317 * 60.00071 * 10 9 7 12 12 C 1.53000 * 109.47060 * 59.99960 * 11 10 9 13 13 N 1.46901 * 109.46769 * 180.02562 * 12 11 10 14 14 C 1.46900 * 110.99890 * 204.99887 * 13 12 11 15 15 C 1.52999 * 109.47165 * 180.02562 * 14 13 12 16 16 C 1.53004 * 109.47208 * 179.97438 * 15 14 13 17 17 C 1.52999 * 117.50075 * 243.74768 * 16 15 14 18 18 C 1.52993 * 117.50040 * 175.08441 * 16 15 14 19 19 C 1.53002 * 109.47233 * 299.99657 * 12 11 10 20 20 C 1.52997 * 109.46817 * 60.00194 * 19 12 11 21 21 H 0.96998 * 120.00365 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.46974 * 299.99788 * 9 7 2 23 23 H 1.08996 * 109.46929 * 299.99175 * 10 9 7 24 24 H 1.09002 * 109.46716 * 179.97438 * 10 9 7 25 25 H 1.09002 * 109.47153 * 299.99641 * 11 10 9 26 26 H 1.09001 * 109.46832 * 179.97438 * 11 10 9 27 27 H 1.08992 * 109.47399 * 59.99823 * 12 11 10 28 28 H 1.00898 * 111.00476 * 81.04496 * 13 12 11 29 29 H 1.09005 * 109.46934 * 299.99673 * 14 13 12 30 30 H 1.09002 * 109.47391 * 59.99776 * 14 13 12 31 31 H 1.08994 * 109.47309 * 299.99521 * 15 14 13 32 32 H 1.08995 * 109.47559 * 60.00157 * 15 14 13 33 33 H 1.09007 * 115.54969 * 29.41603 * 16 15 14 34 34 H 1.09003 * 117.49652 * 359.97438 * 17 16 15 35 35 H 1.09004 * 117.49874 * 145.01912 * 17 16 15 36 36 H 1.09005 * 117.50214 * 214.97953 * 18 16 15 37 37 H 1.08997 * 117.50217 * 0.02562 * 18 16 15 38 38 H 1.08993 * 109.47662 * 180.02562 * 19 12 11 39 39 H 1.09002 * 109.47075 * 300.00932 * 19 12 11 40 40 H 1.09002 * 109.47153 * 60.00231 * 20 19 12 41 41 H 1.09001 * 109.47289 * 180.02562 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3964 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 0.3720 -2.5805 -1.2490 11 6 1.2520 -2.4997 -2.4979 12 6 2.2463 -3.6627 -2.4973 13 7 3.0916 -3.5847 -3.6962 14 6 3.6171 -4.9083 -4.0567 15 6 4.4912 -4.7868 -5.3066 16 6 5.0390 -6.1653 -5.6818 17 6 6.5549 -6.3632 -5.6220 18 6 5.8469 -6.2760 -6.9763 19 6 3.1255 -3.5813 -1.2478 20 6 2.2454 -3.6621 0.0011 21 1 -0.4850 0.8400 -0.0004 22 1 0.6241 -2.5567 0.8903 23 1 -0.3364 -1.7521 -1.2494 24 1 -0.1727 -3.5247 -1.2492 25 1 1.7970 -1.5557 -2.4980 26 1 0.6257 -2.5581 -3.3881 27 1 1.7013 -4.6066 -2.4973 28 1 3.8407 -2.9210 -3.5680 29 1 4.2143 -5.2989 -3.2327 30 1 2.7875 -5.5862 -4.2575 31 1 3.8944 -4.3961 -6.1307 32 1 5.3208 -4.1091 -5.1054 33 1 4.4097 -7.0119 -5.4073 34 1 7.1620 -5.5113 -5.3157 35 1 6.9229 -7.3402 -5.3085 36 1 5.7494 -7.1956 -7.5534 37 1 5.9885 -5.3668 -7.5605 38 1 3.8341 -4.4095 -1.2475 39 1 3.6704 -2.6373 -1.2478 40 1 1.7004 -4.6061 0.0012 41 1 2.8717 -3.6037 0.8914 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173330124.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:40 Heat of formation + Delta-G solvation = -7.204610 kcal Electronic energy + Delta-G solvation = -17208.569629 eV Core-core repulsion = 14701.606439 eV Total energy + Delta-G solvation = -2506.963189 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.41430 -37.59350 -34.85520 -32.19621 -30.24072 -29.45520 -27.11619 -24.60319 -22.64650 -22.36010 -21.35629 -20.85696 -20.18292 -18.65651 -15.96949 -15.73905 -15.13681 -14.90872 -14.63134 -14.24397 -13.60176 -13.23029 -13.10876 -12.62802 -12.29165 -11.94540 -11.69797 -11.45044 -11.34073 -11.15888 -11.11979 -10.94668 -10.86775 -10.51393 -10.32006 -10.20422 -10.05793 -9.95585 -9.54106 -9.15445 -8.91106 -8.58207 -8.22028 -7.82776 -5.91661 -3.95837 3.32347 3.40969 3.43603 3.65504 4.35357 4.48659 4.76882 4.79558 4.89211 5.20671 5.38868 5.39592 5.46521 5.53418 5.65304 5.70481 5.76911 5.83420 5.94526 5.97427 6.06488 6.17351 6.27059 6.32801 6.54207 6.60283 6.68494 6.79559 6.84828 6.91986 7.06136 7.25104 7.43969 7.62991 7.68574 7.79561 7.86115 8.02072 8.23501 8.54620 9.06430 9.67174 11.14305 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.034457 B = 0.004983 C = 0.004741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.405033 B = 5618.163561 C = 5904.244579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.883 3.117 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.286 1.286 7 C -0.499 4.499 8 H 0.054 0.946 9 C 0.043 3.957 10 C -0.108 4.108 11 C -0.086 4.086 12 C 0.095 3.905 13 N -0.689 5.689 14 C 0.062 3.938 15 C -0.087 4.087 16 C -0.148 4.148 17 C -0.184 4.184 18 C -0.183 4.183 19 C -0.132 4.132 20 C -0.103 4.103 21 H 0.258 0.742 22 H 0.023 0.977 23 H 0.091 0.909 24 H 0.012 0.988 25 H 0.069 0.931 26 H 0.037 0.963 27 H 0.060 0.940 28 H 0.337 0.663 29 H 0.026 0.974 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.060 0.940 33 H 0.103 0.897 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.031 0.969 39 H 0.070 0.930 40 H 0.032 0.968 41 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.328 -10.234 -9.491 16.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.139 4.139 3 Si 0.712 3.288 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.212 1.212 7 C -0.537 4.537 8 H 0.072 0.928 9 C 0.025 3.975 10 C -0.147 4.147 11 C -0.124 4.124 12 C -0.015 4.015 13 N -0.318 5.318 14 C -0.068 4.068 15 C -0.125 4.125 16 C -0.167 4.167 17 C -0.221 4.221 18 C -0.220 4.220 19 C -0.171 4.171 20 C -0.141 4.141 21 H 0.068 0.932 22 H 0.041 0.959 23 H 0.110 0.890 24 H 0.031 0.969 25 H 0.088 0.912 26 H 0.056 0.944 27 H 0.078 0.922 28 H 0.155 0.845 29 H 0.044 0.956 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.079 0.921 33 H 0.121 0.879 34 H 0.111 0.889 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.111 0.889 38 H 0.050 0.950 39 H 0.089 0.911 40 H 0.050 0.950 41 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 7.646 -10.148 -9.939 16.132 hybrid contribution 1.207 0.746 0.718 1.591 sum 8.853 -9.402 -9.221 15.868 Atomic orbital electron populations 1.69876 1.05811 1.26017 1.51295 1.24929 0.94747 0.98760 0.95501 0.86672 0.80165 0.84475 0.77500 1.19965 1.21114 1.21234 1.21165 0.92630 0.90467 1.49486 0.92824 1.18700 0.92668 0.92000 0.94171 1.21524 0.98753 0.99290 0.95087 1.21306 0.96390 0.97539 0.97145 1.21607 0.93975 0.99440 0.86433 1.60710 1.25149 1.07837 1.38144 1.21909 0.97162 0.92108 0.95579 1.21161 0.98920 0.94004 0.98397 1.22312 0.93612 0.99398 1.01342 1.23047 0.95139 1.02870 1.00996 1.22959 1.05172 1.03022 0.90827 1.22085 0.97989 1.00476 0.96587 1.21499 0.98168 0.98669 0.95788 0.93244 0.95910 0.89048 0.96947 0.91242 0.94432 0.92200 0.84510 0.95572 0.91539 0.90819 0.92113 0.87905 0.88870 0.89125 0.89068 0.88853 0.95035 0.91110 0.94962 0.93794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.29 11.32 55.43 0.63 -24.66 16 2 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 3 Si 0.88 21.21 29.54 -169.99 -5.02 16.19 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.50 -13.29 6.61 -34.44 -0.23 -13.52 16 8 H 0.05 1.43 6.71 -52.49 -0.35 1.07 16 9 C 0.04 1.06 2.59 -91.77 -0.24 0.82 16 10 C -0.11 -2.56 5.24 -26.73 -0.14 -2.70 16 11 C -0.09 -1.83 5.31 -26.73 -0.14 -1.98 16 12 C 0.09 1.74 2.47 -67.71 -0.17 1.57 16 13 N -0.69 -11.03 6.25 -106.72 -0.67 -11.70 16 14 C 0.06 0.83 5.44 -3.82 -0.02 0.81 16 15 C -0.09 -0.99 5.76 -26.73 -0.15 -1.15 16 16 C -0.15 -1.48 5.73 -90.62 -0.52 -2.00 16 17 C -0.18 -1.68 10.18 -26.69 -0.27 -1.95 16 18 C -0.18 -1.62 10.25 -26.70 -0.27 -1.89 16 19 C -0.13 -2.52 4.94 -26.73 -0.13 -2.65 16 20 C -0.10 -2.16 5.41 -26.73 -0.14 -2.30 16 21 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 22 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.09 2.43 6.07 -51.93 -0.32 2.12 16 24 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 25 H 0.07 1.64 7.22 -51.93 -0.37 1.26 16 26 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.06 1.10 7.80 -51.93 -0.41 0.70 16 28 H 0.34 5.31 8.47 -39.29 -0.33 4.97 16 29 H 0.03 0.36 7.44 -51.93 -0.39 -0.03 16 30 H 0.07 0.90 8.06 -51.93 -0.42 0.48 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.06 0.69 7.87 -51.93 -0.41 0.28 16 33 H 0.10 1.01 8.08 -51.92 -0.42 0.59 16 34 H 0.09 0.85 8.03 -51.93 -0.42 0.43 16 35 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.03 0.54 7.45 -51.93 -0.39 0.15 16 39 H 0.07 1.45 6.60 -51.93 -0.34 1.11 16 40 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 315.04 15.07 4.75 4.75 Total: -1.00 -27.13 315.04 -10.34 -37.47 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -7.50 Total: 3.30 kcal Atomic # 6 Polarization: -22.82 SS G_CDS: -2.53 Total: -25.35 kcal Atomic # 7 Polarization: -36.32 SS G_CDS: -0.04 Total: -36.36 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -27.13 -10.34 -37.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173330124.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.266 kcal (2) G-P(sol) polarization free energy of solvation -27.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds