Wall clock time and date at job start Sun Mar 29 2020 21:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99940 * 2 1 4 4 H 1.48500 * 109.47389 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47057 * 300.00015 * 3 2 1 6 6 H 1.48495 * 109.47216 * 59.99887 * 3 2 1 7 7 C 1.37879 * 120.00409 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00516 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99661 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46953 * 60.00040 * 9 7 2 11 11 C 1.52997 * 109.47317 * 60.00071 * 10 9 7 12 12 C 1.53000 * 109.47060 * 59.99960 * 11 10 9 13 13 N 1.46901 * 109.46769 * 180.02562 * 12 11 10 14 14 C 1.46900 * 110.99890 * 204.99887 * 13 12 11 15 15 C 1.52999 * 109.47165 * 180.02562 * 14 13 12 16 16 C 1.53004 * 109.47208 * 179.97438 * 15 14 13 17 17 C 1.52999 * 117.50075 * 243.74768 * 16 15 14 18 18 C 1.52993 * 117.50040 * 175.08441 * 16 15 14 19 19 C 1.53002 * 109.47233 * 299.99657 * 12 11 10 20 20 C 1.52997 * 109.46817 * 60.00194 * 19 12 11 21 21 H 0.96998 * 120.00365 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.46974 * 299.99788 * 9 7 2 23 23 H 1.08996 * 109.46929 * 299.99175 * 10 9 7 24 24 H 1.09002 * 109.46716 * 179.97438 * 10 9 7 25 25 H 1.09002 * 109.47153 * 299.99641 * 11 10 9 26 26 H 1.09001 * 109.46832 * 179.97438 * 11 10 9 27 27 H 1.08992 * 109.47399 * 59.99823 * 12 11 10 28 28 H 1.00898 * 111.00476 * 81.04496 * 13 12 11 29 29 H 1.09005 * 109.46934 * 299.99673 * 14 13 12 30 30 H 1.09002 * 109.47391 * 59.99776 * 14 13 12 31 31 H 1.08994 * 109.47309 * 299.99521 * 15 14 13 32 32 H 1.08995 * 109.47559 * 60.00157 * 15 14 13 33 33 H 1.09007 * 115.54969 * 29.41603 * 16 15 14 34 34 H 1.09003 * 117.49652 * 359.97438 * 17 16 15 35 35 H 1.09004 * 117.49874 * 145.01912 * 17 16 15 36 36 H 1.09005 * 117.50214 * 214.97953 * 18 16 15 37 37 H 1.08997 * 117.50217 * 0.02562 * 18 16 15 38 38 H 1.08993 * 109.47662 * 180.02562 * 19 12 11 39 39 H 1.09002 * 109.47075 * 300.00932 * 19 12 11 40 40 H 1.09002 * 109.47153 * 60.00231 * 20 19 12 41 41 H 1.09001 * 109.47289 * 180.02562 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3964 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 0.3720 -2.5805 -1.2490 11 6 1.2520 -2.4997 -2.4979 12 6 2.2463 -3.6627 -2.4973 13 7 3.0916 -3.5847 -3.6962 14 6 3.6171 -4.9083 -4.0567 15 6 4.4912 -4.7868 -5.3066 16 6 5.0390 -6.1653 -5.6818 17 6 6.5549 -6.3632 -5.6220 18 6 5.8469 -6.2760 -6.9763 19 6 3.1255 -3.5813 -1.2478 20 6 2.2454 -3.6621 0.0011 21 1 -0.4850 0.8400 -0.0004 22 1 0.6241 -2.5567 0.8903 23 1 -0.3364 -1.7521 -1.2494 24 1 -0.1727 -3.5247 -1.2492 25 1 1.7970 -1.5557 -2.4980 26 1 0.6257 -2.5581 -3.3881 27 1 1.7013 -4.6066 -2.4973 28 1 3.8407 -2.9210 -3.5680 29 1 4.2143 -5.2989 -3.2327 30 1 2.7875 -5.5862 -4.2575 31 1 3.8944 -4.3961 -6.1307 32 1 5.3208 -4.1091 -5.1054 33 1 4.4097 -7.0119 -5.4073 34 1 7.1620 -5.5113 -5.3157 35 1 6.9229 -7.3402 -5.3085 36 1 5.7494 -7.1956 -7.5534 37 1 5.9885 -5.3668 -7.5605 38 1 3.8341 -4.4095 -1.2475 39 1 3.6704 -2.6373 -1.2478 40 1 1.7004 -4.6061 0.0012 41 1 2.8717 -3.6037 0.8914 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173330124.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:40 Heat of formation + Delta-G solvation = -21.058937 kcal Electronic energy + Delta-G solvation = -17209.170398 eV Core-core repulsion = 14701.606439 eV Total energy + Delta-G solvation = -2507.563958 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.90658 -38.53485 -36.29469 -34.05730 -31.68365 -31.14162 -28.62521 -26.53682 -23.70053 -23.17690 -22.99744 -22.23912 -21.22402 -20.47527 -17.83143 -16.87447 -16.52402 -16.29566 -16.07859 -15.59785 -14.90621 -14.79239 -14.63211 -14.29855 -13.62391 -13.35831 -13.17480 -12.87063 -12.80542 -12.58576 -12.39218 -12.34820 -12.24049 -12.10921 -11.99591 -11.81561 -11.41310 -11.16106 -10.89340 -10.76011 -10.70544 -10.51695 -10.26851 -9.16189 -8.01245 -6.11339 1.40361 1.43526 1.52704 2.47003 2.93316 3.26219 3.27644 3.89486 4.04246 4.06214 4.10487 4.19650 4.30451 4.46057 4.47630 4.66817 4.68856 4.78864 4.81917 4.82636 4.89566 4.97108 5.03136 5.04985 5.08099 5.13917 5.21919 5.26559 5.30674 5.44326 5.45243 5.48032 5.68989 5.70997 5.77981 5.96897 6.21031 6.31859 6.47415 6.58655 6.98635 7.54521 9.03822 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.034457 B = 0.004983 C = 0.004741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.405033 B = 5618.163561 C = 5904.244579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.013 3.987 3 Si 0.942 3.058 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.504 4.504 8 H 0.052 0.948 9 C 0.038 3.962 10 C -0.104 4.104 11 C -0.077 4.077 12 C 0.106 3.894 13 N -0.692 5.692 14 C 0.065 3.935 15 C -0.079 4.079 16 C -0.159 4.159 17 C -0.183 4.183 18 C -0.178 4.178 19 C -0.123 4.123 20 C -0.099 4.099 21 H 0.257 0.743 22 H -0.013 1.013 23 H 0.057 0.943 24 H 0.025 0.975 25 H 0.043 0.957 26 H 0.041 0.959 27 H 0.068 0.932 28 H 0.340 0.660 29 H 0.029 0.971 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.106 0.894 34 H 0.092 0.908 35 H 0.100 0.900 36 H 0.102 0.898 37 H 0.094 0.906 38 H 0.058 0.942 39 H 0.053 0.947 40 H 0.049 0.951 41 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.986 -11.360 -10.549 18.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.185 4.185 3 Si 0.769 3.231 4 H -0.191 1.191 5 H -0.210 1.210 6 H -0.212 1.212 7 C -0.542 4.542 8 H 0.070 0.930 9 C 0.019 3.981 10 C -0.142 4.142 11 C -0.115 4.115 12 C -0.004 4.004 13 N -0.322 5.322 14 C -0.064 4.064 15 C -0.117 4.117 16 C -0.177 4.177 17 C -0.220 4.220 18 C -0.215 4.215 19 C -0.162 4.162 20 C -0.137 4.137 21 H 0.066 0.934 22 H 0.005 0.995 23 H 0.075 0.925 24 H 0.044 0.956 25 H 0.062 0.938 26 H 0.060 0.940 27 H 0.086 0.914 28 H 0.157 0.843 29 H 0.047 0.953 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.124 0.876 34 H 0.110 0.890 35 H 0.118 0.882 36 H 0.121 0.879 37 H 0.113 0.887 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.067 0.933 41 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 9.321 -11.283 -11.003 18.310 hybrid contribution 0.666 1.069 1.055 1.643 sum 9.988 -10.214 -9.948 17.408 Atomic orbital electron populations 1.70019 1.07099 1.26563 1.52318 1.25627 0.95454 1.01871 0.95514 0.85745 0.79326 0.80769 0.77275 1.19128 1.21015 1.21151 1.21413 0.92633 0.91468 1.48709 0.92960 1.18696 0.93162 0.93133 0.93073 1.21381 0.98467 0.98491 0.95875 1.21152 0.96601 0.97766 0.95992 1.21358 0.93667 0.98079 0.87264 1.60625 1.25482 1.09464 1.36583 1.21953 0.97481 0.90497 0.96479 1.21052 0.98449 0.95009 0.97151 1.22268 0.94240 0.98549 1.02681 1.23118 0.94382 1.03379 1.01133 1.23038 1.04121 1.03675 0.90647 1.21987 0.97924 1.00636 0.95676 1.21413 0.97682 0.97643 0.96980 0.93420 0.99482 0.92487 0.95636 0.93836 0.93990 0.91401 0.84262 0.95294 0.91412 0.91411 0.92069 0.87620 0.88953 0.88199 0.87925 0.88724 0.92357 0.92806 0.93269 0.93836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.54 11.32 21.45 0.24 -53.30 16 2 C 0.01 0.72 5.30 84.66 0.45 1.17 16 3 Si 0.94 43.88 29.54 68.60 2.03 45.90 16 4 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 5 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 6 H -0.29 -13.18 7.11 99.48 0.71 -12.48 16 7 C -0.50 -27.11 6.61 25.60 0.17 -26.94 16 8 H 0.05 2.78 6.71 -2.91 -0.02 2.76 16 9 C 0.04 1.89 2.59 -11.54 -0.03 1.86 16 10 C -0.10 -4.95 5.24 30.59 0.16 -4.79 16 11 C -0.08 -3.26 5.31 30.59 0.16 -3.10 16 12 C 0.11 3.71 2.47 44.92 0.11 3.82 16 13 N -0.69 -20.77 6.25 -491.56 -3.07 -23.84 16 14 C 0.06 1.58 5.44 86.30 0.47 2.05 16 15 C -0.08 -1.62 5.76 30.60 0.18 -1.45 16 16 C -0.16 -2.79 5.73 -10.79 -0.06 -2.85 16 17 C -0.18 -2.89 10.18 30.62 0.31 -2.58 16 18 C -0.18 -2.70 10.25 30.62 0.31 -2.39 16 19 C -0.12 -4.44 4.94 30.59 0.15 -4.29 16 20 C -0.10 -4.03 5.41 30.60 0.17 -3.86 16 21 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 22 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 23 H 0.06 3.12 6.07 -2.39 -0.01 3.11 16 24 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.04 2.06 7.22 -2.39 -0.02 2.04 16 26 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.07 2.31 7.80 -2.39 -0.02 2.29 16 28 H 0.34 10.06 8.47 -89.70 -0.76 9.30 16 29 H 0.03 0.70 7.44 -2.38 -0.02 0.68 16 30 H 0.07 1.65 8.06 -2.39 -0.02 1.63 16 31 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.06 1.25 7.87 -2.39 -0.02 1.23 16 33 H 0.11 1.80 8.08 -2.38 -0.02 1.79 16 34 H 0.09 1.47 8.03 -2.39 -0.02 1.45 16 35 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.10 1.33 8.14 -2.38 -0.02 1.31 16 37 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.06 1.81 7.45 -2.39 -0.02 1.79 16 39 H 0.05 2.13 6.60 -2.39 -0.02 2.11 16 40 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -57.90 315.04 1.96 -55.94 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: 0.22 Total: 18.65 kcal Atomic # 6 Polarization: -45.91 SS G_CDS: 2.55 Total: -43.36 kcal Atomic # 7 Polarization: -74.30 SS G_CDS: -2.83 Total: -77.13 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.90 kcal Total: -57.90 1.96 -55.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173330124.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.878 kcal (2) G-P(sol) polarization free energy of solvation -57.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds