Wall clock time and date at job start Sun Mar 29 2020 21:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86803 * 119.99627 * 2 1 4 4 H 1.48503 * 109.47033 * 269.99814 * 3 2 1 5 5 H 1.48495 * 109.47136 * 29.99822 * 3 2 1 6 6 H 1.48499 * 109.47173 * 150.00265 * 3 2 1 7 7 C 1.38805 * 120.00472 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00037 * 359.97438 * 7 2 1 9 9 N 1.36941 * 120.00314 * 180.02562 * 7 2 1 10 10 C 1.46496 * 119.99951 * 179.97438 * 9 7 2 11 11 H 1.09004 * 109.47522 * 35.00219 * 10 9 7 12 12 C 1.52993 * 109.47551 * 274.99864 * 10 9 7 13 13 C 1.53006 * 109.47478 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.46974 * 59.99993 * 13 12 10 15 15 C 1.53002 * 109.47092 * 300.00168 * 14 13 12 16 16 C 1.52997 * 109.47143 * 300.00129 * 15 14 13 17 17 C 1.53002 * 109.46817 * 180.02562 * 16 15 14 18 18 C 1.53000 * 109.47233 * 60.00194 * 17 16 15 19 19 C 1.52997 * 109.47060 * 299.99657 * 18 17 16 20 20 C 1.52999 * 109.47317 * 59.99960 * 19 18 17 21 21 C 1.52997 * 109.46965 * 60.00457 * 15 14 13 22 22 H 0.97000 * 120.00476 * 0.02562 * 1 2 3 23 23 H 0.97005 * 119.99678 * 359.97438 * 9 7 2 24 24 H 1.09000 * 109.47250 * 300.00222 * 12 10 9 25 25 H 1.09004 * 109.46862 * 60.00198 * 12 10 9 26 26 H 1.08998 * 109.46884 * 180.02562 * 13 12 10 27 27 H 1.09000 * 109.46866 * 300.00218 * 13 12 10 28 28 H 1.09002 * 109.47045 * 180.02562 * 14 13 12 29 29 H 1.09000 * 109.47140 * 60.00393 * 14 13 12 30 30 H 1.08993 * 109.47194 * 59.99677 * 16 15 14 31 31 H 1.09002 * 109.46695 * 299.99691 * 16 15 14 32 32 H 1.08992 * 109.47063 * 299.99823 * 17 16 15 33 33 H 1.09004 * 109.46733 * 179.97438 * 17 16 15 34 34 H 1.09002 * 109.47398 * 59.99826 * 18 17 16 35 35 H 1.09001 * 109.47194 * 180.02562 * 18 17 16 36 36 H 1.08996 * 109.47853 * 180.02562 * 19 18 17 37 37 H 1.09002 * 109.47153 * 300.00319 * 19 18 17 38 38 H 1.09000 * 109.47486 * 180.02562 * 20 19 18 39 39 H 1.09002 * 109.46716 * 60.00091 * 20 19 18 40 40 H 1.09000 * 109.47380 * 59.99705 * 21 15 14 41 41 H 1.09001 * 109.46989 * 180.02562 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4474 2.6527 0.7000 6 1 3.5476 1.4403 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3797 -1.2020 0.0000 10 6 4.1122 -2.4707 0.0000 11 1 3.5651 -3.2062 -0.5899 12 6 4.2578 -2.9756 1.4368 13 6 5.0234 -4.3003 1.4369 14 6 6.4108 -4.0875 0.8280 15 6 6.2652 -3.5826 -0.6089 16 6 5.4977 -4.6151 -1.4370 17 6 5.3527 -4.1104 -2.8741 18 6 6.7403 -3.8982 -3.4826 19 6 7.5078 -2.8656 -2.6545 20 6 7.6528 -3.3702 -1.2174 21 6 5.4997 -2.2579 -0.6089 22 1 -0.4851 0.8400 -0.0004 23 1 3.8646 -0.3619 0.0004 24 1 4.8049 -2.2402 2.0267 25 1 3.2694 -3.1268 1.8707 26 1 5.1268 -4.6602 2.4605 27 1 4.4767 -5.0359 0.8469 28 1 6.9561 -5.0313 0.8276 29 1 6.9576 -3.3519 1.4180 30 1 4.5094 -4.7668 -1.0032 31 1 6.0432 -5.5588 -1.4370 32 1 4.8075 -3.1667 -2.8744 33 1 4.8063 -4.8463 -3.4641 34 1 7.2855 -4.8420 -3.4823 35 1 6.6370 -3.5382 -4.5062 36 1 8.4962 -2.7139 -3.0882 37 1 6.9626 -1.9217 -2.6549 38 1 8.1992 -2.6344 -0.6274 39 1 8.1980 -4.3140 -1.2171 40 1 6.0464 -1.5223 -0.0189 41 1 5.3955 -1.8984 -1.6326 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173340453.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:10 Heat of formation + Delta-G solvation = -26.317154 kcal Electronic energy + Delta-G solvation = -18233.141072 eV Core-core repulsion = 15725.349101 eV Total energy + Delta-G solvation = -2507.791972 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.20605 -36.14158 -33.91211 -31.45566 -30.85040 -30.29060 -28.50985 -25.61393 -23.34849 -22.70040 -21.97711 -20.56023 -19.58241 -18.26050 -17.09246 -15.77494 -14.85265 -14.55387 -14.26699 -13.99443 -13.73555 -13.47095 -13.06801 -12.92890 -12.58118 -12.46302 -12.02352 -11.73658 -11.56725 -11.24313 -11.02019 -10.90523 -10.89708 -10.69603 -10.59911 -10.36632 -10.10239 -10.02821 -9.77495 -9.61907 -9.47384 -9.27962 -8.81629 -7.18786 -5.72049 -3.06171 3.40612 3.43957 3.48127 4.63598 4.73705 4.75625 4.88440 5.12699 5.27836 5.34135 5.43060 5.49103 5.52813 5.60513 5.66421 5.72126 5.76793 5.80259 5.87546 5.91183 5.97640 6.08815 6.10297 6.13496 6.16524 6.26047 6.27694 6.34821 6.38583 6.47378 6.52374 6.61556 6.66408 6.72088 6.83129 7.02687 7.17228 8.06145 8.47807 9.27382 10.00462 10.21166 11.46693 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.027056 B = 0.007594 C = 0.006946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.639699 B = 3686.436048 C = 4030.204642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.002 3.998 3 Si 0.883 3.117 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.278 1.278 7 C -0.237 4.237 8 H 0.089 0.911 9 N -0.751 5.751 10 C 0.182 3.818 11 H 0.057 0.943 12 C -0.135 4.135 13 C -0.119 4.119 14 C -0.105 4.105 15 C -0.050 4.050 16 C -0.109 4.109 17 C -0.125 4.125 18 C -0.116 4.116 19 C -0.122 4.122 20 C -0.106 4.106 21 C -0.117 4.117 22 H 0.258 0.742 23 H 0.359 0.641 24 H 0.050 0.950 25 H 0.062 0.938 26 H 0.051 0.949 27 H 0.061 0.939 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.072 0.928 31 H 0.053 0.947 32 H 0.072 0.928 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.056 0.944 36 H 0.054 0.946 37 H 0.067 0.933 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.053 0.947 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.136 -8.978 -2.803 18.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.193 4.193 3 Si 0.714 3.286 4 H -0.212 1.212 5 H -0.219 1.219 6 H -0.204 1.204 7 C -0.367 4.367 8 H 0.107 0.893 9 N -0.393 5.393 10 C 0.073 3.927 11 H 0.074 0.926 12 C -0.176 4.176 13 C -0.157 4.157 14 C -0.143 4.143 15 C -0.051 4.051 16 C -0.146 4.146 17 C -0.162 4.162 18 C -0.153 4.153 19 C -0.160 4.160 20 C -0.143 4.143 21 C -0.155 4.155 22 H 0.068 0.932 23 H 0.191 0.809 24 H 0.069 0.931 25 H 0.080 0.920 26 H 0.070 0.930 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.072 0.928 32 H 0.091 0.909 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.085 0.915 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 15.875 -9.032 -2.815 18.480 hybrid contribution 0.529 1.291 0.121 1.400 sum 16.404 -7.741 -2.694 18.338 Atomic orbital electron populations 1.69698 1.05083 1.25675 1.58048 1.24657 0.95206 0.97114 1.02369 0.86561 0.79219 0.85137 0.77712 1.21183 1.21879 1.20379 1.19089 0.80735 0.94587 1.42299 0.89306 1.42833 1.03925 1.02205 1.90293 1.20230 0.90447 0.88811 0.93169 0.92552 1.22212 0.99737 0.95291 1.00312 1.21574 0.95797 0.98665 0.99648 1.21568 0.97304 1.00099 0.95308 1.20462 0.94509 0.95702 0.94419 1.21657 1.00764 0.97342 0.94886 1.21597 0.96630 1.02015 0.95962 1.21501 0.96442 0.98845 0.98527 1.21578 0.99644 0.99346 0.95415 1.21567 0.96488 1.00568 0.95716 1.21968 0.96512 0.95776 1.01260 0.93184 0.80870 0.93104 0.91961 0.93030 0.92072 0.92795 0.92397 0.90963 0.92777 0.90937 0.92505 0.92595 0.92569 0.92729 0.91461 0.92389 0.92461 0.92802 0.91383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.76 13.97 55.49 0.78 -28.99 16 2 C 0.00 0.05 5.50 -17.44 -0.10 -0.04 16 3 Si 0.88 22.50 27.74 -169.99 -4.71 17.79 16 4 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 5 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 6 H -0.28 -6.70 6.52 56.52 0.37 -6.33 16 7 C -0.24 -6.74 10.41 -15.06 -0.16 -6.90 16 8 H 0.09 2.71 8.06 -52.48 -0.42 2.28 16 9 N -0.75 -17.98 4.92 -53.43 -0.26 -18.25 16 10 C 0.18 3.52 2.50 -67.93 -0.17 3.35 16 11 H 0.06 1.14 6.37 -51.93 -0.33 0.81 16 12 C -0.14 -2.41 5.50 -26.73 -0.15 -2.56 16 13 C -0.12 -1.67 5.65 -26.73 -0.15 -1.83 16 14 C -0.11 -1.33 4.73 -26.73 -0.13 -1.45 16 15 C -0.05 -0.65 0.51 -154.51 -0.08 -0.73 16 16 C -0.11 -1.39 4.04 -26.73 -0.11 -1.50 16 17 C -0.12 -1.58 5.65 -26.73 -0.15 -1.73 16 18 C -0.12 -1.28 5.92 -26.73 -0.16 -1.44 16 19 C -0.12 -1.37 5.65 -26.73 -0.15 -1.52 16 20 C -0.11 -1.20 4.73 -26.73 -0.13 -1.33 16 21 C -0.12 -1.86 3.51 -26.73 -0.09 -1.96 16 22 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 23 H 0.36 8.52 5.66 -40.82 -0.23 8.29 16 24 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.06 0.85 6.43 -51.93 -0.33 0.52 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.07 1.02 4.81 -51.93 -0.25 0.77 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.07 1.07 6.43 -51.93 -0.33 0.73 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.83 6.43 -51.93 -0.33 0.50 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.07 1.11 4.81 -51.93 -0.25 0.86 16 LS Contribution 294.81 15.07 4.44 4.44 Total: -1.00 -30.26 294.81 -8.62 -38.88 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -7.15 Total: 5.77 kcal Atomic # 6 Polarization: -17.93 SS G_CDS: -1.71 Total: -19.65 kcal Atomic # 7 Polarization: -47.75 SS G_CDS: 0.51 Total: -47.24 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -4.71 Total: 17.79 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -30.26 -8.62 -38.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173340453.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.564 kcal (2) G-P(sol) polarization free energy of solvation -30.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds