Wall clock time and date at job start Sun Mar 29 2020 21:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86803 * 119.99627 * 2 1 4 4 H 1.48503 * 109.47033 * 269.99814 * 3 2 1 5 5 H 1.48495 * 109.47136 * 29.99822 * 3 2 1 6 6 H 1.48499 * 109.47173 * 150.00265 * 3 2 1 7 7 C 1.38805 * 120.00472 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00037 * 359.97438 * 7 2 1 9 9 N 1.36941 * 120.00314 * 180.02562 * 7 2 1 10 10 C 1.46496 * 119.99951 * 179.97438 * 9 7 2 11 11 H 1.09004 * 109.47522 * 35.00219 * 10 9 7 12 12 C 1.52993 * 109.47551 * 274.99864 * 10 9 7 13 13 C 1.53006 * 109.47478 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.46974 * 59.99993 * 13 12 10 15 15 C 1.53002 * 109.47092 * 300.00168 * 14 13 12 16 16 C 1.52997 * 109.47143 * 300.00129 * 15 14 13 17 17 C 1.53002 * 109.46817 * 180.02562 * 16 15 14 18 18 C 1.53000 * 109.47233 * 60.00194 * 17 16 15 19 19 C 1.52997 * 109.47060 * 299.99657 * 18 17 16 20 20 C 1.52999 * 109.47317 * 59.99960 * 19 18 17 21 21 C 1.52997 * 109.46965 * 60.00457 * 15 14 13 22 22 H 0.97000 * 120.00476 * 0.02562 * 1 2 3 23 23 H 0.97005 * 119.99678 * 359.97438 * 9 7 2 24 24 H 1.09000 * 109.47250 * 300.00222 * 12 10 9 25 25 H 1.09004 * 109.46862 * 60.00198 * 12 10 9 26 26 H 1.08998 * 109.46884 * 180.02562 * 13 12 10 27 27 H 1.09000 * 109.46866 * 300.00218 * 13 12 10 28 28 H 1.09002 * 109.47045 * 180.02562 * 14 13 12 29 29 H 1.09000 * 109.47140 * 60.00393 * 14 13 12 30 30 H 1.08993 * 109.47194 * 59.99677 * 16 15 14 31 31 H 1.09002 * 109.46695 * 299.99691 * 16 15 14 32 32 H 1.08992 * 109.47063 * 299.99823 * 17 16 15 33 33 H 1.09004 * 109.46733 * 179.97438 * 17 16 15 34 34 H 1.09002 * 109.47398 * 59.99826 * 18 17 16 35 35 H 1.09001 * 109.47194 * 180.02562 * 18 17 16 36 36 H 1.08996 * 109.47853 * 180.02562 * 19 18 17 37 37 H 1.09002 * 109.47153 * 300.00319 * 19 18 17 38 38 H 1.09000 * 109.47486 * 180.02562 * 20 19 18 39 39 H 1.09002 * 109.46716 * 60.00091 * 20 19 18 40 40 H 1.09000 * 109.47380 * 59.99705 * 21 15 14 41 41 H 1.09001 * 109.46989 * 180.02562 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4474 2.6527 0.7000 6 1 3.5476 1.4403 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3797 -1.2020 0.0000 10 6 4.1122 -2.4707 0.0000 11 1 3.5651 -3.2062 -0.5899 12 6 4.2578 -2.9756 1.4368 13 6 5.0234 -4.3003 1.4369 14 6 6.4108 -4.0875 0.8280 15 6 6.2652 -3.5826 -0.6089 16 6 5.4977 -4.6151 -1.4370 17 6 5.3527 -4.1104 -2.8741 18 6 6.7403 -3.8982 -3.4826 19 6 7.5078 -2.8656 -2.6545 20 6 7.6528 -3.3702 -1.2174 21 6 5.4997 -2.2579 -0.6089 22 1 -0.4851 0.8400 -0.0004 23 1 3.8646 -0.3619 0.0004 24 1 4.8049 -2.2402 2.0267 25 1 3.2694 -3.1268 1.8707 26 1 5.1268 -4.6602 2.4605 27 1 4.4767 -5.0359 0.8469 28 1 6.9561 -5.0313 0.8276 29 1 6.9576 -3.3519 1.4180 30 1 4.5094 -4.7668 -1.0032 31 1 6.0432 -5.5588 -1.4370 32 1 4.8075 -3.1667 -2.8744 33 1 4.8063 -4.8463 -3.4641 34 1 7.2855 -4.8420 -3.4823 35 1 6.6370 -3.5382 -4.5062 36 1 8.4962 -2.7139 -3.0882 37 1 6.9626 -1.9217 -2.6549 38 1 8.1992 -2.6344 -0.6274 39 1 8.1980 -4.3140 -1.2171 40 1 6.0464 -1.5223 -0.0189 41 1 5.3955 -1.8984 -1.6326 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173340453.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:10 Heat of formation + Delta-G solvation = -43.529765 kcal Electronic energy + Delta-G solvation = -18233.887467 eV Core-core repulsion = 15725.349101 eV Total energy + Delta-G solvation = -2508.538366 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.34081 -37.53007 -35.57487 -33.43050 -31.93643 -31.34258 -30.19435 -26.71418 -25.33388 -23.71751 -23.19595 -21.92540 -20.78247 -20.02604 -18.61486 -17.08239 -16.39289 -16.01993 -15.63292 -15.24324 -14.98383 -14.78465 -14.55938 -14.34381 -13.94014 -13.90345 -13.20523 -13.00241 -12.95534 -12.81472 -12.54363 -12.33422 -12.05897 -11.96180 -11.84694 -11.77351 -11.70988 -11.53115 -11.24281 -10.98385 -10.83101 -10.57572 -10.45910 -9.27729 -8.02516 -5.34535 1.35190 1.38581 1.46005 2.47523 3.28543 3.51493 3.71542 3.85530 3.96145 4.21818 4.23433 4.30101 4.40979 4.43385 4.53317 4.62424 4.67510 4.69260 4.76118 4.79460 4.80080 4.93152 4.96103 5.13114 5.14992 5.17358 5.24316 5.29671 5.30184 5.37071 5.41658 5.48625 5.52321 5.57392 5.58928 5.71446 5.77564 5.81426 6.22682 7.08790 7.87001 8.05891 9.19536 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.027056 B = 0.007594 C = 0.006946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.639699 B = 3686.436048 C = 4030.204642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.986 5.986 2 C -0.067 4.067 3 Si 0.955 3.045 4 H -0.278 1.278 5 H -0.296 1.296 6 H -0.254 1.254 7 C -0.224 4.224 8 H 0.052 0.948 9 N -0.755 5.755 10 C 0.176 3.824 11 H 0.039 0.961 12 C -0.129 4.129 13 C -0.113 4.113 14 C -0.101 4.101 15 C -0.046 4.046 16 C -0.108 4.108 17 C -0.126 4.126 18 C -0.111 4.111 19 C -0.123 4.123 20 C -0.101 4.101 21 C -0.107 4.107 22 H 0.257 0.743 23 H 0.362 0.638 24 H 0.050 0.950 25 H 0.028 0.972 26 H 0.067 0.933 27 H 0.061 0.939 28 H 0.081 0.919 29 H 0.063 0.937 30 H 0.051 0.949 31 H 0.076 0.924 32 H 0.042 0.958 33 H 0.059 0.941 34 H 0.072 0.928 35 H 0.058 0.942 36 H 0.072 0.928 37 H 0.049 0.951 38 H 0.063 0.937 39 H 0.077 0.923 40 H 0.056 0.944 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.719 -9.495 -2.881 22.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.637 5.637 2 C -0.258 4.258 3 Si 0.782 3.218 4 H -0.204 1.204 5 H -0.223 1.223 6 H -0.179 1.179 7 C -0.355 4.355 8 H 0.070 0.930 9 N -0.397 5.397 10 C 0.069 3.931 11 H 0.057 0.943 12 C -0.169 4.169 13 C -0.151 4.151 14 C -0.138 4.138 15 C -0.047 4.047 16 C -0.145 4.145 17 C -0.164 4.164 18 C -0.149 4.149 19 C -0.161 4.161 20 C -0.138 4.138 21 C -0.145 4.145 22 H 0.066 0.934 23 H 0.195 0.805 24 H 0.068 0.932 25 H 0.047 0.953 26 H 0.086 0.914 27 H 0.079 0.921 28 H 0.099 0.901 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.094 0.906 32 H 0.061 0.939 33 H 0.078 0.922 34 H 0.091 0.909 35 H 0.077 0.923 36 H 0.091 0.909 37 H 0.068 0.932 38 H 0.082 0.918 39 H 0.096 0.904 40 H 0.074 0.926 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 19.513 -9.584 -2.891 21.931 hybrid contribution -0.649 1.342 0.129 1.496 sum 18.864 -8.242 -2.762 20.770 Atomic orbital electron populations 1.69884 1.07096 1.26537 1.60226 1.25486 0.96114 1.01161 1.03052 0.85405 0.78551 0.79739 0.78068 1.20436 1.22255 1.17901 1.19019 0.82782 0.93198 1.40505 0.92954 1.42885 1.02392 1.04170 1.90291 1.20460 0.91880 0.86488 0.94247 0.94288 1.22073 0.98659 0.97671 0.98546 1.21526 0.96457 0.96073 1.01000 1.21563 0.96116 1.01637 0.94504 1.20455 0.95280 0.93715 0.95253 1.21640 0.99974 0.98323 0.94588 1.21584 0.97740 1.00578 0.96451 1.21477 0.95202 0.99709 0.98486 1.21590 1.00324 0.98479 0.95696 1.21537 0.95043 1.01805 0.95435 1.21864 0.94379 0.97956 1.00329 0.93449 0.80481 0.93159 0.95286 0.91416 0.92076 0.90077 0.91855 0.93078 0.90565 0.93884 0.92210 0.90885 0.92284 0.90915 0.93230 0.91809 0.90448 0.92571 0.92134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -64.92 13.97 21.65 0.30 -64.62 16 2 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 3 Si 0.95 47.00 27.74 68.60 1.90 48.91 16 4 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 5 H -0.30 -14.68 7.11 99.48 0.71 -13.97 16 6 H -0.25 -11.40 6.52 99.48 0.65 -10.75 16 7 C -0.22 -13.21 10.41 84.03 0.87 -12.34 16 8 H 0.05 3.40 8.06 -2.91 -0.02 3.38 16 9 N -0.75 -36.68 4.92 -322.94 -1.59 -38.27 16 10 C 0.18 6.90 2.50 44.99 0.11 7.01 16 11 H 0.04 1.66 6.37 -2.39 -0.02 1.64 16 12 C -0.13 -4.63 5.50 30.59 0.17 -4.46 16 13 C -0.11 -2.97 5.65 30.60 0.17 -2.80 16 14 C -0.10 -2.18 4.73 30.59 0.14 -2.04 16 15 C -0.05 -1.08 0.51 -52.18 -0.03 -1.11 16 16 C -0.11 -2.55 4.04 30.59 0.12 -2.43 16 17 C -0.13 -3.06 5.65 30.60 0.17 -2.89 16 18 C -0.11 -2.17 5.92 30.59 0.18 -1.99 16 19 C -0.12 -2.40 5.65 30.59 0.17 -2.22 16 20 C -0.10 -1.89 4.73 30.60 0.14 -1.75 16 21 C -0.11 -3.29 3.51 30.60 0.11 -3.19 16 22 H 0.26 16.08 8.31 -92.71 -0.77 15.31 16 23 H 0.36 16.96 5.66 -92.70 -0.52 16.44 16 24 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 25 H 0.03 1.19 8.14 -2.38 -0.02 1.17 16 26 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.06 1.62 6.43 -2.39 -0.02 1.61 16 28 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.06 1.34 8.14 -2.39 -0.02 1.33 16 30 H 0.05 1.42 4.81 -2.39 -0.01 1.41 16 31 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.04 1.28 6.43 -2.39 -0.02 1.27 16 33 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.06 1.11 8.14 -2.39 -0.02 1.10 16 36 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.05 1.14 6.43 -2.39 -0.02 1.12 16 38 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.06 1.96 4.81 -2.39 -0.01 1.95 16 Total: -1.00 -67.35 294.81 3.84 -63.51 By element: Atomic # 1 Polarization: 23.87 SS G_CDS: 0.41 Total: 24.27 kcal Atomic # 6 Polarization: -36.62 SS G_CDS: 2.82 Total: -33.81 kcal Atomic # 7 Polarization: -101.59 SS G_CDS: -1.29 Total: -102.88 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 1.90 Total: 48.91 kcal Total: -67.35 3.84 -63.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173340453.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.981 kcal (2) G-P(sol) polarization free energy of solvation -67.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds