Wall clock time and date at job start Sun Mar 29 2020 21:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48496 * 109.47141 * 239.99943 * 3 2 1 5 5 H 1.48490 * 109.47071 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46993 * 120.00220 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 C 1.46505 * 119.99788 * 179.72358 * 9 7 2 11 11 H 1.09000 * 109.46989 * 324.99520 * 10 9 7 12 12 C 1.52996 * 109.47130 * 84.99932 * 10 9 7 13 13 C 1.52998 * 109.47178 * 179.97438 * 12 10 9 14 14 C 1.52998 * 109.47164 * 300.00289 * 13 12 10 15 15 C 1.52996 * 109.47309 * 59.99792 * 14 13 12 16 16 C 1.53003 * 109.47332 * 180.02562 * 15 14 13 17 17 C 1.53012 * 109.46768 * 299.99994 * 16 15 14 18 18 C 1.52997 * 109.46849 * 299.99849 * 17 16 15 19 19 C 1.52994 * 109.47326 * 60.00071 * 18 17 16 20 20 C 1.52996 * 109.47201 * 60.00252 * 15 14 13 21 21 C 1.53003 * 109.47208 * 299.99860 * 15 14 13 22 22 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 23 23 H 0.97000 * 120.00420 * 359.72564 * 9 7 2 24 24 H 1.08998 * 109.47099 * 300.00036 * 12 10 9 25 25 H 1.09002 * 109.46807 * 60.00065 * 12 10 9 26 26 H 1.09000 * 109.46863 * 59.99636 * 13 12 10 27 27 H 1.08994 * 109.47323 * 180.02562 * 13 12 10 28 28 H 1.08998 * 109.47497 * 180.02562 * 14 13 12 29 29 H 1.09002 * 109.47179 * 300.00028 * 14 13 12 30 30 H 1.08994 * 109.47273 * 59.99808 * 16 15 14 31 31 H 1.09001 * 109.47515 * 180.02562 * 16 15 14 32 32 H 1.09008 * 109.46656 * 180.02562 * 17 16 15 33 33 H 1.08992 * 109.46900 * 59.99926 * 17 16 15 34 34 H 1.09004 * 109.47577 * 300.00159 * 18 17 16 35 35 H 1.09003 * 109.46936 * 180.02562 * 18 17 16 36 36 H 1.09002 * 109.47448 * 179.97438 * 19 18 17 37 37 H 1.09006 * 109.46991 * 60.00022 * 19 18 17 38 38 H 1.09004 * 109.47496 * 180.02562 * 20 15 14 39 39 H 1.08998 * 109.46919 * 299.99896 * 20 15 14 40 40 H 1.08994 * 109.47227 * 300.00088 * 21 15 14 41 41 H 1.09004 * 109.47179 * 179.97438 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 6 2.0580 -3.6568 -0.0134 11 1 2.9686 -3.5475 -0.6024 12 6 2.4219 -4.0431 1.4215 13 6 3.1863 -5.3685 1.4146 14 6 2.3085 -6.4602 0.7994 15 6 1.9446 -6.0739 -0.6355 16 6 1.0664 -7.1654 -1.2505 17 6 1.8304 -8.4911 -1.2574 18 6 3.1086 -8.3387 -2.0843 19 6 3.9867 -7.2472 -1.4694 20 6 3.2229 -5.9211 -1.4623 21 6 1.1801 -4.7486 -0.6286 22 1 -0.4850 0.8401 0.0004 23 1 0.3555 -2.3880 -0.0068 24 1 3.0468 -3.2651 1.8599 25 1 1.5111 -4.1524 2.0104 26 1 4.0969 -5.2596 0.8255 27 1 3.4451 -5.6440 2.4369 28 1 2.8529 -7.4046 0.7949 29 1 1.3978 -6.5691 1.3884 30 1 0.1558 -7.2739 -0.6614 31 1 0.8074 -6.8904 -2.2730 32 1 1.2048 -9.2687 -1.6960 33 1 2.0896 -8.7663 -0.2351 34 1 2.8493 -8.0635 -3.1067 35 1 3.6526 -9.2833 -2.0896 36 1 4.8976 -7.1390 -2.0583 37 1 4.2461 -7.5225 -0.4471 38 1 2.9637 -5.6454 -2.4846 39 1 3.8482 -5.1433 -1.0241 40 1 0.2695 -4.8575 -0.0396 41 1 0.9213 -4.4731 -1.6510 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173340454.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:12 Heat of formation + Delta-G solvation = -30.224455 kcal Electronic energy + Delta-G solvation = -18020.869374 eV Core-core repulsion = 15512.907969 eV Total energy + Delta-G solvation = -2507.961405 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.14671 -36.15427 -33.55967 -31.19555 -31.02219 -30.44549 -27.82225 -25.58400 -23.61609 -22.64927 -21.63920 -21.12766 -19.36074 -17.85628 -16.95434 -15.70239 -14.82442 -14.50274 -14.27252 -14.00724 -13.69815 -13.41816 -13.08695 -12.82664 -12.62380 -12.12847 -11.98691 -11.75398 -11.40094 -11.10077 -10.95885 -10.88116 -10.76848 -10.70995 -10.50486 -10.34151 -10.14255 -9.99743 -9.79890 -9.68779 -9.39595 -9.18416 -8.78152 -6.86844 -5.70199 -2.97803 3.47338 3.51584 3.52640 4.62373 4.77390 4.79572 4.88837 5.18985 5.28762 5.35422 5.44565 5.50551 5.57096 5.65696 5.70146 5.71855 5.80763 5.92223 5.96769 6.00552 6.02280 6.10334 6.14730 6.19647 6.24351 6.27353 6.32082 6.33798 6.47183 6.51059 6.60444 6.70994 6.74627 6.81256 6.91961 7.11597 7.27848 7.75439 8.49251 9.59664 10.20319 10.54716 11.52783 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.041770 B = 0.005767 C = 0.005720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.169423 B = 4854.093810 C = 4894.059289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.016 4.016 3 Si 0.905 3.095 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.287 1.287 7 C -0.234 4.234 8 H 0.068 0.932 9 N -0.727 5.727 10 C 0.179 3.821 11 H 0.047 0.953 12 C -0.134 4.134 13 C -0.119 4.119 14 C -0.106 4.106 15 C -0.049 4.049 16 C -0.108 4.108 17 C -0.120 4.120 18 C -0.118 4.118 19 C -0.121 4.121 20 C -0.112 4.112 21 C -0.112 4.112 22 H 0.254 0.746 23 H 0.382 0.618 24 H 0.056 0.944 25 H 0.051 0.949 26 H 0.059 0.941 27 H 0.048 0.952 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.054 0.946 36 H 0.055 0.945 37 H 0.063 0.937 38 H 0.058 0.942 39 H 0.071 0.929 40 H 0.056 0.944 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.284 -17.064 -1.604 17.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.211 4.211 3 Si 0.736 3.264 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.214 1.214 7 C -0.366 4.366 8 H 0.086 0.914 9 N -0.367 5.367 10 C 0.069 3.931 11 H 0.065 0.935 12 C -0.175 4.175 13 C -0.157 4.157 14 C -0.144 4.144 15 C -0.049 4.049 16 C -0.146 4.146 17 C -0.157 4.157 18 C -0.155 4.155 19 C -0.158 4.158 20 C -0.149 4.149 21 C -0.150 4.150 22 H 0.064 0.936 23 H 0.215 0.785 24 H 0.075 0.925 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.090 0.910 40 H 0.075 0.925 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.391 -16.895 -1.623 17.809 hybrid contribution 0.099 1.008 0.078 1.016 sum 5.491 -15.887 -1.546 16.880 Atomic orbital electron populations 1.69653 1.05084 1.25591 1.58075 1.24719 0.95478 0.97568 1.03358 0.86300 0.78527 0.83788 0.77796 1.21353 1.21750 1.21367 1.19207 0.90904 0.84264 1.42180 0.91380 1.42452 1.05747 0.99898 1.88569 1.20238 0.94338 0.85757 0.92769 0.93512 1.22239 0.99449 0.95088 1.00703 1.21582 0.98752 0.95976 0.99372 1.21642 0.99553 0.97964 0.95212 1.20448 0.94967 0.94749 0.94782 1.21593 0.97902 0.94306 1.00797 1.21568 0.96510 0.97362 1.00277 1.21517 0.96309 0.98305 0.99377 1.21588 0.97860 0.95488 1.00862 1.21688 0.96404 0.96907 0.99907 1.21844 0.98500 0.93657 1.01009 0.93580 0.78452 0.92479 0.92991 0.92273 0.93280 0.92251 0.92550 0.92255 0.92179 0.92701 0.91865 0.92302 0.92746 0.92629 0.91843 0.92299 0.91001 0.92484 0.92207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.76 13.06 55.49 0.72 -28.04 16 2 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 3 Si 0.90 22.76 29.55 -169.99 -5.02 17.74 16 4 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 6 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 7 C -0.23 -6.63 9.93 -15.06 -0.15 -6.77 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.73 -18.64 5.12 -53.42 -0.27 -18.92 16 10 C 0.18 3.61 2.50 -67.93 -0.17 3.45 16 11 H 0.05 0.98 6.37 -51.93 -0.33 0.65 16 12 C -0.13 -2.49 5.50 -26.73 -0.15 -2.64 16 13 C -0.12 -1.73 5.65 -26.73 -0.15 -1.88 16 14 C -0.11 -1.40 4.04 -26.73 -0.11 -1.51 16 15 C -0.05 -0.67 0.51 -154.51 -0.08 -0.74 16 16 C -0.11 -1.31 4.73 -26.72 -0.13 -1.43 16 17 C -0.12 -1.23 5.65 -26.73 -0.15 -1.38 16 18 C -0.12 -1.18 5.92 -26.74 -0.16 -1.34 16 19 C -0.12 -1.33 5.65 -26.71 -0.15 -1.48 16 20 C -0.11 -1.48 4.04 -26.71 -0.11 -1.59 16 21 C -0.11 -1.92 4.20 -26.73 -0.11 -2.03 16 22 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 23 H 0.38 10.45 7.80 -40.82 -0.32 10.13 16 24 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 25 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.06 0.84 6.43 -51.93 -0.33 0.51 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.69 4.81 -51.93 -0.25 0.44 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.05 0.51 8.14 -51.92 -0.42 0.09 16 33 H 0.06 0.64 6.43 -51.93 -0.33 0.31 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.69 6.43 -51.93 -0.33 0.35 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.07 1.04 4.81 -51.93 -0.25 0.79 16 40 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 297.92 15.07 4.49 4.49 Total: -1.00 -29.54 297.92 -8.98 -38.52 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -7.19 Total: 6.11 kcal Atomic # 6 Polarization: -18.20 SS G_CDS: -1.71 Total: -19.91 kcal Atomic # 7 Polarization: -47.40 SS G_CDS: 0.45 Total: -46.95 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.02 Total: 17.74 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -29.54 -8.98 -38.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173340454.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.295 kcal (2) G-P(sol) polarization free energy of solvation -29.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds