Wall clock time and date at job start Sun Mar 29 2020 21:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48496 * 109.47141 * 239.99943 * 3 2 1 5 5 H 1.48490 * 109.47071 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46993 * 120.00220 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 C 1.46505 * 119.99788 * 179.72358 * 9 7 2 11 11 H 1.09000 * 109.46989 * 324.99520 * 10 9 7 12 12 C 1.52996 * 109.47130 * 84.99932 * 10 9 7 13 13 C 1.52998 * 109.47178 * 179.97438 * 12 10 9 14 14 C 1.52998 * 109.47164 * 300.00289 * 13 12 10 15 15 C 1.52996 * 109.47309 * 59.99792 * 14 13 12 16 16 C 1.53003 * 109.47332 * 180.02562 * 15 14 13 17 17 C 1.53012 * 109.46768 * 299.99994 * 16 15 14 18 18 C 1.52997 * 109.46849 * 299.99849 * 17 16 15 19 19 C 1.52994 * 109.47326 * 60.00071 * 18 17 16 20 20 C 1.52996 * 109.47201 * 60.00252 * 15 14 13 21 21 C 1.53003 * 109.47208 * 299.99860 * 15 14 13 22 22 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 23 23 H 0.97000 * 120.00420 * 359.72564 * 9 7 2 24 24 H 1.08998 * 109.47099 * 300.00036 * 12 10 9 25 25 H 1.09002 * 109.46807 * 60.00065 * 12 10 9 26 26 H 1.09000 * 109.46863 * 59.99636 * 13 12 10 27 27 H 1.08994 * 109.47323 * 180.02562 * 13 12 10 28 28 H 1.08998 * 109.47497 * 180.02562 * 14 13 12 29 29 H 1.09002 * 109.47179 * 300.00028 * 14 13 12 30 30 H 1.08994 * 109.47273 * 59.99808 * 16 15 14 31 31 H 1.09001 * 109.47515 * 180.02562 * 16 15 14 32 32 H 1.09008 * 109.46656 * 180.02562 * 17 16 15 33 33 H 1.08992 * 109.46900 * 59.99926 * 17 16 15 34 34 H 1.09004 * 109.47577 * 300.00159 * 18 17 16 35 35 H 1.09003 * 109.46936 * 180.02562 * 18 17 16 36 36 H 1.09002 * 109.47448 * 179.97438 * 19 18 17 37 37 H 1.09006 * 109.46991 * 60.00022 * 19 18 17 38 38 H 1.09004 * 109.47496 * 180.02562 * 20 15 14 39 39 H 1.08998 * 109.46919 * 299.99896 * 20 15 14 40 40 H 1.08994 * 109.47227 * 300.00088 * 21 15 14 41 41 H 1.09004 * 109.47179 * 179.97438 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 6 2.0580 -3.6568 -0.0134 11 1 2.9686 -3.5475 -0.6024 12 6 2.4219 -4.0431 1.4215 13 6 3.1863 -5.3685 1.4146 14 6 2.3085 -6.4602 0.7994 15 6 1.9446 -6.0739 -0.6355 16 6 1.0664 -7.1654 -1.2505 17 6 1.8304 -8.4911 -1.2574 18 6 3.1086 -8.3387 -2.0843 19 6 3.9867 -7.2472 -1.4694 20 6 3.2229 -5.9211 -1.4623 21 6 1.1801 -4.7486 -0.6286 22 1 -0.4850 0.8401 0.0004 23 1 0.3555 -2.3880 -0.0068 24 1 3.0468 -3.2651 1.8599 25 1 1.5111 -4.1524 2.0104 26 1 4.0969 -5.2596 0.8255 27 1 3.4451 -5.6440 2.4369 28 1 2.8529 -7.4046 0.7949 29 1 1.3978 -6.5691 1.3884 30 1 0.1558 -7.2739 -0.6614 31 1 0.8074 -6.8904 -2.2730 32 1 1.2048 -9.2687 -1.6960 33 1 2.0896 -8.7663 -0.2351 34 1 2.8493 -8.0635 -3.1067 35 1 3.6526 -9.2833 -2.0896 36 1 4.8976 -7.1390 -2.0583 37 1 4.2461 -7.5225 -0.4471 38 1 2.9637 -5.6454 -2.4846 39 1 3.8482 -5.1433 -1.0241 40 1 0.2695 -4.8575 -0.0396 41 1 0.9213 -4.4731 -1.6510 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173340454.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:12 Heat of formation + Delta-G solvation = -46.268227 kcal Electronic energy + Delta-G solvation = -18021.565084 eV Core-core repulsion = 15512.907969 eV Total energy + Delta-G solvation = -2508.657115 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.31022 -37.56552 -35.31261 -32.89537 -32.31177 -31.45126 -29.54904 -26.75578 -25.62122 -23.63482 -23.02134 -22.23192 -20.75110 -19.34727 -18.67100 -17.06288 -16.30276 -15.99851 -15.46490 -15.26109 -15.05528 -14.98502 -14.57894 -14.13398 -13.86002 -13.54411 -13.00617 -12.95374 -12.85793 -12.78962 -12.52941 -12.24706 -12.17416 -12.04624 -11.92657 -11.82795 -11.63167 -11.51622 -11.21256 -10.92742 -10.71886 -10.62300 -10.44416 -8.98206 -7.93751 -5.21713 1.45085 1.48455 1.54556 2.56040 3.38912 3.66354 3.73456 3.87159 4.09625 4.18631 4.25032 4.34424 4.43063 4.47900 4.56750 4.66491 4.68934 4.72379 4.76189 4.77654 4.80440 4.92664 4.98837 5.10465 5.15661 5.22093 5.25919 5.30162 5.32235 5.40623 5.40974 5.45816 5.52197 5.56817 5.57485 5.61409 5.73245 5.81722 6.29272 7.33883 8.12645 8.35536 9.30010 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.041770 B = 0.005767 C = 0.005720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.169423 B = 4854.093810 C = 4894.059289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.078 4.078 3 Si 0.972 3.028 4 H -0.278 1.278 5 H -0.295 1.295 6 H -0.279 1.279 7 C -0.238 4.238 8 H 0.072 0.928 9 N -0.741 5.741 10 C 0.174 3.826 11 H 0.040 0.960 12 C -0.127 4.127 13 C -0.111 4.111 14 C -0.102 4.102 15 C -0.043 4.043 16 C -0.107 4.107 17 C -0.115 4.115 18 C -0.116 4.116 19 C -0.116 4.116 20 C -0.112 4.112 21 C -0.103 4.103 22 H 0.250 0.750 23 H 0.369 0.631 24 H 0.033 0.967 25 H 0.040 0.960 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.087 0.913 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.053 0.947 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.054 0.946 35 H 0.073 0.927 36 H 0.063 0.937 37 H 0.071 0.929 38 H 0.048 0.952 39 H 0.055 0.945 40 H 0.049 0.951 41 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.766 -19.122 -1.497 20.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.270 4.270 3 Si 0.800 3.200 4 H -0.204 1.204 5 H -0.221 1.221 6 H -0.205 1.205 7 C -0.370 4.370 8 H 0.090 0.910 9 N -0.380 5.380 10 C 0.067 3.933 11 H 0.058 0.942 12 C -0.167 4.167 13 C -0.149 4.149 14 C -0.139 4.139 15 C -0.044 4.044 16 C -0.145 4.145 17 C -0.153 4.153 18 C -0.154 4.154 19 C -0.153 4.153 20 C -0.149 4.149 21 C -0.142 4.142 22 H 0.059 0.941 23 H 0.201 0.799 24 H 0.052 0.948 25 H 0.059 0.941 26 H 0.084 0.916 27 H 0.086 0.914 28 H 0.105 0.895 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.073 0.927 35 H 0.092 0.908 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.066 0.934 39 H 0.074 0.926 40 H 0.068 0.932 41 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 6.914 -18.996 -1.515 20.272 hybrid contribution -0.358 1.624 0.027 1.663 sum 6.556 -17.373 -1.488 18.628 Atomic orbital electron populations 1.69819 1.06627 1.26000 1.59886 1.25545 0.96365 1.01019 1.04053 0.85237 0.77230 0.79326 0.78165 1.20405 1.22076 1.20470 1.19578 0.91259 0.85447 1.40684 0.91032 1.42699 1.05342 1.01248 1.88719 1.20463 0.94099 0.84678 0.94091 0.94226 1.22072 0.99081 0.96948 0.98586 1.21527 0.98560 0.93874 1.00920 1.21633 0.99574 0.98449 0.94212 1.20404 0.95047 0.93078 0.95845 1.21567 0.97878 0.94825 1.00201 1.21554 0.96520 0.96216 1.00984 1.21523 0.96148 0.98732 0.98990 1.21562 0.97941 0.94142 1.01672 1.21657 0.96142 0.98138 0.98960 1.21751 0.98147 0.94842 0.99437 0.94101 0.79933 0.94799 0.94097 0.91648 0.91408 0.89505 0.92596 0.92216 0.92823 0.91330 0.91040 0.92685 0.90844 0.91872 0.91025 0.93361 0.92595 0.93221 0.93774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.36 13.06 21.65 0.28 -61.08 16 2 C -0.08 -4.62 5.50 84.86 0.47 -4.15 16 3 Si 0.97 47.40 29.55 68.60 2.03 49.43 16 4 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 5 H -0.29 -14.41 7.11 99.48 0.71 -13.70 16 6 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 7 C -0.24 -13.73 9.93 84.04 0.83 -12.90 16 8 H 0.07 3.99 7.83 -2.91 -0.02 3.97 16 9 N -0.74 -39.31 5.12 -322.93 -1.65 -40.96 16 10 C 0.17 7.22 2.50 44.99 0.11 7.33 16 11 H 0.04 1.70 6.37 -2.39 -0.02 1.68 16 12 C -0.13 -4.72 5.50 30.59 0.17 -4.55 16 13 C -0.11 -3.02 5.65 30.59 0.17 -2.85 16 14 C -0.10 -2.41 4.04 30.59 0.12 -2.28 16 15 C -0.04 -1.12 0.51 -52.18 -0.03 -1.15 16 16 C -0.11 -2.37 4.73 30.60 0.14 -2.23 16 17 C -0.12 -1.97 5.65 30.60 0.17 -1.80 16 18 C -0.12 -1.94 5.92 30.59 0.18 -1.76 16 19 C -0.12 -2.20 5.65 30.61 0.17 -2.02 16 20 C -0.11 -2.80 4.04 30.61 0.12 -2.68 16 21 C -0.10 -3.61 4.20 30.60 0.13 -3.48 16 22 H 0.25 15.31 8.31 -92.70 -0.77 14.54 16 23 H 0.37 21.09 7.80 -92.71 -0.72 20.36 16 24 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.06 1.73 6.43 -2.39 -0.02 1.71 16 27 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.09 1.66 4.81 -2.39 -0.01 1.65 16 29 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 33 H 0.07 1.13 6.43 -2.39 -0.02 1.12 16 34 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.07 1.26 6.43 -2.38 -0.02 1.24 16 38 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.06 1.57 4.81 -2.39 -0.01 1.56 16 40 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 41 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -64.28 297.92 3.70 -60.58 By element: Atomic # 1 Polarization: 26.27 SS G_CDS: 0.27 Total: 26.54 kcal Atomic # 6 Polarization: -37.29 SS G_CDS: 2.78 Total: -34.51 kcal Atomic # 7 Polarization: -100.66 SS G_CDS: -1.37 Total: -102.04 kcal Atomic # 14 Polarization: 47.40 SS G_CDS: 2.03 Total: 49.43 kcal Total: -64.28 3.70 -60.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173340454.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.311 kcal (2) G-P(sol) polarization free energy of solvation -64.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds