Wall clock time and date at job start Sun Mar 29 2020 21:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.46764 * 2 1 4 4 C 1.34948 * 126.03161 * 124.97813 * 3 2 1 5 5 C 1.35318 * 107.74367 * 179.74750 * 4 3 2 6 6 C 1.39870 * 107.91757 * 0.39507 * 5 4 3 7 7 C 1.50703 * 125.89966 * 179.86282 * 6 5 4 8 8 N 1.46891 * 109.47378 * 94.71345 * 7 6 5 9 9 C 1.46904 * 111.00294 * 293.95726 * 8 7 6 10 10 C 1.46902 * 111.00371 * 169.99970 * 8 7 6 11 11 H 1.09002 * 109.46719 * 60.00237 * 10 8 7 12 12 C 1.52997 * 109.47094 * 300.00463 * 10 8 7 13 13 C 1.50697 * 109.47181 * 180.02562 * 10 8 7 14 14 H 1.07999 * 120.00055 * 0.02562 * 13 10 8 15 15 C 1.37878 * 119.99687 * 180.02562 * 13 10 8 16 16 N 1.31511 * 120.00458 * 359.97438 * 15 13 10 17 17 Si 1.86805 * 119.99926 * 180.02562 * 15 13 10 18 18 H 1.48500 * 109.47262 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.46882 * 119.99668 * 17 15 13 20 20 H 1.48493 * 109.47394 * 239.99732 * 17 15 13 21 21 N 1.30841 * 108.20224 * 359.59833 * 6 5 4 22 22 H 1.09003 * 109.46757 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47464 * 299.99320 * 1 2 3 24 24 H 1.08995 * 109.47621 * 59.99826 * 1 2 3 25 25 H 1.09006 * 109.47257 * 240.00414 * 2 1 3 26 26 H 1.08995 * 109.47621 * 120.00174 * 2 1 3 27 27 H 1.07998 * 126.13261 * 0.02562 * 4 3 2 28 28 H 1.07994 * 126.04217 * 180.27187 * 5 4 3 29 29 H 1.09003 * 109.46712 * 334.71494 * 7 6 5 30 30 H 1.08998 * 109.47145 * 214.72168 * 7 6 5 31 31 H 1.09001 * 109.46959 * 296.04481 * 9 8 7 32 32 H 1.09004 * 109.46998 * 56.04312 * 9 8 7 33 33 H 1.09000 * 109.47411 * 176.04522 * 9 8 7 34 34 H 1.09002 * 109.47153 * 299.99508 * 12 10 8 35 35 H 1.09001 * 109.46832 * 179.97438 * 12 10 8 36 36 H 1.09004 * 109.47261 * 59.99681 * 12 10 8 37 37 H 0.96999 * 120.00480 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.8726 1.9212 0.8942 5 6 3.0757 3.2122 0.5430 6 6 2.3124 3.4724 -0.5998 7 6 2.2359 4.7882 -1.3306 8 7 3.2003 4.7898 -2.4386 9 6 4.5800 4.7490 -1.9358 10 6 2.9935 5.9504 -3.3150 11 1 3.1208 6.8674 -2.7395 12 6 1.5788 5.9052 -3.8959 13 6 3.9983 5.9177 -4.4375 14 1 4.7183 5.1147 -4.4945 15 6 3.9985 6.9128 -5.3918 16 7 3.1215 7.8904 -5.3228 17 14 5.2436 6.8718 -6.7838 18 1 6.1117 5.6761 -6.6364 19 1 4.5299 6.8074 -8.0845 20 1 6.0785 8.0990 -6.7375 21 7 1.6808 2.3746 -0.9281 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5138 0.8899 27 1 3.3184 1.4128 1.7363 28 1 3.7128 3.9175 1.0558 29 1 2.4717 5.6001 -0.6426 30 1 1.2292 4.9268 -1.7248 31 1 4.7870 5.6564 -1.3685 32 1 4.7057 3.8800 -1.2898 33 1 5.2711 4.6801 -2.7759 34 1 1.4515 4.9882 -4.4713 35 1 1.4253 6.7667 -4.5458 36 1 0.8517 5.9287 -3.0841 37 1 3.1218 8.5907 -5.9939 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180031037.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:43 Heat of formation + Delta-G solvation = 64.061597 kcal Electronic energy + Delta-G solvation = -16930.130218 eV Core-core repulsion = 14322.717020 eV Total energy + Delta-G solvation = -2607.413198 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.04476 -38.72464 -35.54104 -34.57986 -31.77910 -31.06727 -30.18009 -28.65159 -26.70884 -25.30879 -23.67703 -21.89595 -21.55281 -20.25662 -18.38982 -17.76909 -17.13807 -16.28129 -15.92278 -15.72438 -15.26605 -15.05363 -14.54314 -14.31181 -14.20638 -13.59414 -13.40686 -13.17658 -12.94341 -12.87867 -12.79020 -12.57159 -12.41767 -12.18045 -12.09811 -11.95455 -11.74750 -11.26553 -10.89608 -10.52567 -10.12237 -9.39878 -8.90749 -8.09949 -6.21570 1.06833 1.41969 1.43617 1.55741 1.74580 1.88535 2.44403 3.18176 3.53041 3.60849 4.04444 4.07938 4.15877 4.34332 4.41195 4.54790 4.63800 4.69664 4.76107 4.84525 4.93425 4.93708 4.99389 5.04075 5.08850 5.20917 5.26060 5.30276 5.49958 5.72017 5.76180 5.78364 6.25617 6.32050 6.41384 6.71973 6.91274 6.93977 7.47204 8.96503 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.040107 B = 0.005208 C = 0.005130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.964371 B = 5375.558059 C = 5457.215840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.122 3.878 3 N -0.379 5.379 4 C 0.064 3.936 5 C -0.288 4.288 6 C 0.074 3.926 7 C 0.130 3.870 8 N -0.541 5.541 9 C 0.047 3.953 10 C 0.217 3.783 11 H -0.030 1.030 12 C -0.121 4.121 13 C -0.518 4.518 14 H 0.057 0.943 15 C 0.012 3.988 16 N -0.920 5.920 17 Si 0.962 3.038 18 H -0.269 1.269 19 H -0.280 1.280 20 H -0.278 1.278 21 N -0.322 5.322 22 H 0.101 0.899 23 H 0.055 0.945 24 H 0.040 0.960 25 H 0.081 0.919 26 H 0.135 0.865 27 H 0.219 0.781 28 H 0.154 0.846 29 H 0.047 0.953 30 H 0.073 0.927 31 H 0.013 0.987 32 H 0.068 0.932 33 H 0.056 0.944 34 H 0.025 0.975 35 H 0.063 0.937 36 H 0.029 0.971 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.319 -14.296 14.088 20.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.003 3.997 3 N -0.162 5.162 4 C -0.082 4.082 5 C -0.318 4.318 6 C -0.092 4.092 7 C 0.000 4.000 8 N -0.266 5.266 9 C -0.101 4.101 10 C 0.111 3.889 11 H -0.013 1.013 12 C -0.179 4.179 13 C -0.556 4.556 14 H 0.075 0.925 15 C -0.187 4.187 16 N -0.560 5.560 17 Si 0.787 3.213 18 H -0.194 1.194 19 H -0.206 1.206 20 H -0.204 1.204 21 N -0.145 5.145 22 H 0.119 0.881 23 H 0.074 0.926 24 H 0.059 0.941 25 H 0.100 0.900 26 H 0.153 0.847 27 H 0.235 0.765 28 H 0.171 0.829 29 H 0.065 0.935 30 H 0.091 0.909 31 H 0.032 0.968 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.044 0.956 35 H 0.082 0.918 36 H 0.048 0.952 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.316 -15.279 12.896 20.128 hybrid contribution 1.104 1.564 0.031 1.914 sum -1.212 -13.716 12.928 18.887 Atomic orbital electron populations 1.22004 0.93965 1.03855 1.01909 1.22028 0.96106 0.76083 1.05479 1.49117 1.35799 1.10724 1.20565 1.23134 0.94397 0.94186 0.96513 1.21631 1.10097 0.98313 1.01761 1.22172 0.96796 0.94405 0.95812 1.20337 0.97775 0.90425 0.91422 1.61988 1.03410 1.44122 1.17114 1.22138 0.90069 0.99043 0.98842 1.19071 0.94300 0.85046 0.90532 1.01268 1.21673 0.96230 1.00644 0.99324 1.21423 1.15805 1.08629 1.09784 0.92491 1.25709 0.97765 0.94990 1.00223 1.70021 1.36652 1.12983 1.36339 0.85451 0.78931 0.77985 0.78910 1.19365 1.20629 1.20383 1.77270 1.25451 0.97598 1.14204 0.88066 0.92567 0.94090 0.90024 0.84673 0.76476 0.82854 0.93502 0.90882 0.96832 0.91372 0.92570 0.95563 0.91807 0.95225 0.92879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.61 10.10 71.98 0.73 -1.89 16 2 C 0.12 1.99 7.23 86.38 0.62 2.61 16 3 N -0.38 -9.85 3.68 -348.05 -1.28 -11.13 16 4 C 0.06 1.40 11.45 83.54 0.96 2.36 16 5 C -0.29 -8.21 9.62 21.99 0.21 -8.00 16 6 C 0.07 2.70 5.94 43.10 0.26 2.96 16 7 C 0.13 5.32 5.34 85.56 0.46 5.78 16 8 N -0.54 -25.43 4.61 -906.05 -4.18 -29.61 16 9 C 0.05 2.00 9.05 127.69 1.16 3.16 16 10 C 0.22 11.72 2.06 44.17 0.09 11.81 16 11 H -0.03 -1.77 8.14 -2.39 -0.02 -1.79 16 12 C -0.12 -6.34 8.76 71.98 0.63 -5.71 16 13 C -0.52 -29.73 7.93 25.60 0.20 -29.53 16 14 H 0.06 3.28 6.40 -2.91 -0.02 3.26 16 15 C 0.01 0.66 5.30 84.66 0.45 1.11 16 16 N -0.92 -54.17 11.32 21.45 0.24 -53.93 16 17 Si 0.96 44.85 29.54 68.60 2.03 46.88 16 18 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 19 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 20 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 21 N -0.32 -11.76 12.42 -47.38 -0.59 -12.35 16 22 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 23 H 0.06 0.94 8.14 -2.39 -0.02 0.93 16 24 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 26 H 0.14 1.01 8.07 -2.39 -0.02 0.99 16 27 H 0.22 2.35 8.06 -2.91 -0.02 2.33 16 28 H 0.15 3.83 8.06 -2.91 -0.02 3.81 16 29 H 0.05 1.82 8.12 -2.39 -0.02 1.80 16 30 H 0.07 3.12 5.83 -2.39 -0.01 3.11 16 31 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.07 2.55 6.32 -2.38 -0.02 2.53 16 33 H 0.06 2.53 6.24 -2.39 -0.01 2.52 16 34 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.06 3.61 6.07 -2.39 -0.01 3.60 16 36 H 0.03 1.38 6.20 -2.38 -0.01 1.37 16 37 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 Total: -1.00 -70.68 300.33 3.02 -67.66 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: 1.04 Total: 7.80 kcal Atomic # 6 Polarization: -21.09 SS G_CDS: 5.76 Total: -15.33 kcal Atomic # 7 Polarization: -101.21 SS G_CDS: -5.81 Total: -107.01 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -70.68 3.02 -67.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180031037.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.725 kcal (2) G-P(sol) polarization free energy of solvation -70.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds