Wall clock time and date at job start Sun Mar 29 2020 22:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47208 * 2 1 4 4 C 1.52995 * 109.47289 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.47341 * 179.97438 * 4 3 2 6 6 C 1.36935 * 119.99769 * 89.99745 * 5 4 3 7 7 H 1.08001 * 120.00403 * 318.71994 * 6 5 4 8 8 C 1.38811 * 119.99950 * 138.72307 * 6 5 4 9 9 N 1.31613 * 119.99969 * 342.31871 * 8 6 5 10 10 Si 1.86804 * 119.99954 * 162.31939 * 8 6 5 11 11 H 1.48504 * 109.46998 * 60.00075 * 10 8 6 12 12 H 1.48501 * 109.46768 * 179.97438 * 10 8 6 13 13 H 1.48495 * 109.47180 * 299.99863 * 10 8 6 14 14 C 1.46494 * 120.00193 * 269.99764 * 5 4 3 15 15 C 1.53002 * 109.47168 * 85.84165 * 14 5 4 16 16 H 1.09005 * 109.64202 * 302.18535 * 15 14 5 17 17 C 1.53022 * 109.64071 * 62.60282 * 15 14 5 18 18 C 1.50065 * 110.14815 * 169.12224 * 17 15 14 19 19 C 1.29444 * 124.07580 * 342.86858 * 18 17 15 20 20 C 1.50073 * 124.07243 * 0.48826 * 19 18 17 21 21 C 1.53036 * 110.14126 * 342.83745 * 20 19 18 22 22 H 1.09000 * 109.47447 * 60.00122 * 1 2 3 23 23 H 1.09003 * 109.47326 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.47159 * 300.00065 * 1 2 3 25 25 H 1.09004 * 109.47292 * 239.99813 * 2 1 3 26 26 H 1.09003 * 109.47053 * 120.00189 * 2 1 3 27 27 H 1.09003 * 109.47268 * 300.00057 * 3 2 1 28 28 H 1.09004 * 109.47147 * 59.99724 * 3 2 1 29 29 H 1.09000 * 109.47154 * 299.99749 * 4 3 2 30 30 H 1.08994 * 109.47370 * 59.99756 * 4 3 2 31 31 H 0.97001 * 120.00204 * 180.02562 * 9 8 6 32 32 H 1.08997 * 109.47427 * 205.84155 * 14 5 4 33 33 H 1.09007 * 109.46793 * 325.84682 * 14 5 4 34 34 H 1.09000 * 109.35649 * 289.32810 * 17 15 14 35 35 H 1.08997 * 109.36027 * 49.04541 * 17 15 14 36 36 H 1.08000 * 117.96563 * 162.89085 * 18 17 15 37 37 H 1.07994 * 117.96422 * 180.47303 * 19 18 17 38 38 H 1.09000 * 109.35437 * 103.05606 * 20 19 18 39 39 H 1.08995 * 109.35854 * 222.77556 * 20 19 18 40 40 H 1.09001 * 109.65318 * 289.77516 * 21 20 19 41 41 H 1.08999 * 109.63477 * 169.14212 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0584 2.8237 -0.0013 6 6 4.2870 3.4696 1.1844 7 1 3.5927 3.3562 2.0038 8 6 5.4113 4.2701 1.3331 9 7 6.4220 4.1465 0.4992 10 14 5.4896 5.5226 2.7167 11 1 5.3701 4.8257 4.0226 12 1 6.7861 6.2444 2.6582 13 1 4.3752 6.4930 2.5697 14 6 4.3021 3.5139 -1.2702 15 6 3.0003 4.1484 -1.7639 16 1 2.2366 3.3786 -1.8751 17 6 2.5273 5.2006 -0.7585 18 6 1.4098 6.0117 -1.3463 19 6 1.1372 6.0616 -2.6107 20 6 1.8940 5.3073 -3.6644 21 6 3.2422 4.8395 -3.1117 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 1.6767 1.9563 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 3.9337 0.9286 0.8891 30 1 3.9330 0.9288 -0.8908 31 1 7.2078 4.7056 0.6033 32 1 5.0520 4.2911 -1.1230 33 1 4.6608 2.7982 -2.0100 34 1 2.1763 4.7040 0.1460 35 1 3.3578 5.8609 -0.5089 36 1 0.7950 6.5899 -0.6725 37 1 0.3138 6.6848 -2.9270 38 1 1.3112 4.4409 -3.9772 39 1 2.0637 5.9575 -4.5226 40 1 3.8985 5.6982 -2.9706 41 1 3.6991 4.1358 -3.8076 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201423854.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:02 Heat of formation + Delta-G solvation = 0.197775 kcal Electronic energy + Delta-G solvation = -17905.173467 eV Core-core repulsion = 15398.531269 eV Total energy + Delta-G solvation = -2506.642198 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.22784 -35.95572 -33.97218 -31.50920 -30.65127 -30.02745 -27.72340 -25.43023 -23.64997 -22.48043 -21.30883 -20.11831 -19.73752 -17.32651 -16.49230 -15.45277 -14.83348 -14.64641 -13.87528 -13.65905 -13.59696 -13.36120 -12.71691 -12.64387 -12.20092 -12.04519 -11.82089 -11.63966 -11.49443 -11.11015 -10.91426 -10.74168 -10.64514 -10.52632 -10.34949 -10.16960 -10.08378 -9.87788 -9.45021 -9.36393 -9.23981 -8.43974 -8.36871 -6.39799 -5.70993 -3.33634 2.78761 3.38493 3.44432 3.46466 4.51344 5.22465 5.29914 5.36626 5.41344 5.42023 5.53421 5.62118 5.79349 5.87039 5.97065 6.02955 6.04956 6.17672 6.20084 6.29364 6.32238 6.43930 6.45861 6.47397 6.60564 6.66802 6.71725 6.71847 6.91715 6.97538 7.04349 7.13432 7.19294 7.27480 7.36325 7.55470 7.80071 7.87924 8.62838 9.29655 9.89951 10.51991 11.28422 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.013844 B = 0.011106 C = 0.007463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.995884 B = 2520.502333 C = 3751.029160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C -0.138 4.138 4 C 0.148 3.852 5 N -0.583 5.583 6 C -0.253 4.253 7 H 0.054 0.946 8 C 0.017 3.983 9 N -0.889 5.889 10 Si 0.890 3.110 11 H -0.282 1.282 12 H -0.291 1.291 13 H -0.281 1.281 14 C 0.158 3.842 15 C -0.103 4.103 16 H 0.056 0.944 17 C -0.071 4.071 18 C -0.139 4.139 19 C -0.181 4.181 20 C -0.083 4.083 21 C -0.115 4.115 22 H 0.049 0.951 23 H 0.044 0.956 24 H 0.050 0.950 25 H 0.053 0.947 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.043 0.957 30 H 0.028 0.972 31 H 0.254 0.746 32 H 0.089 0.911 33 H 0.019 0.981 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.063 0.937 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.806 -1.229 -5.262 10.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.178 4.178 4 C 0.022 3.978 5 N -0.303 5.303 6 C -0.383 4.383 7 H 0.072 0.928 8 C -0.183 4.183 9 N -0.531 5.531 10 Si 0.719 3.281 11 H -0.208 1.208 12 H -0.217 1.217 13 H -0.207 1.207 14 C 0.031 3.969 15 C -0.124 4.124 16 H 0.074 0.926 17 C -0.108 4.108 18 C -0.157 4.157 19 C -0.199 4.199 20 C -0.120 4.120 21 C -0.153 4.153 22 H 0.068 0.932 23 H 0.064 0.936 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.062 0.938 30 H 0.046 0.954 31 H 0.064 0.936 32 H 0.107 0.893 33 H 0.037 0.963 34 H 0.099 0.901 35 H 0.088 0.912 36 H 0.108 0.892 37 H 0.107 0.893 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.596 -1.148 -5.252 10.138 hybrid contribution -0.101 0.856 0.734 1.132 sum -8.696 -0.293 -4.518 9.804 Atomic orbital electron populations 1.21763 0.96877 1.00494 1.01466 1.21510 0.94891 0.98577 1.01152 1.22308 0.99817 0.94241 1.01436 1.20863 0.90925 0.87541 0.98518 1.43668 1.76398 1.08052 1.02148 1.18852 1.02728 1.24671 0.92080 0.92799 1.25243 0.94551 1.01138 0.97410 1.69979 1.04865 1.39513 1.38781 0.86590 0.76889 0.82030 0.82585 1.20779 1.21697 1.20749 1.20892 0.93689 0.96456 0.85822 1.21930 1.00965 0.96638 0.92875 0.92577 1.20343 0.95316 0.96273 0.98820 1.22439 0.98690 0.98790 0.95818 1.21891 1.00914 1.01998 0.95060 1.20375 0.96428 0.98654 0.96579 1.21630 0.95855 1.00074 0.97731 0.93175 0.93648 0.93088 0.92783 0.92597 0.92724 0.92659 0.93840 0.95352 0.93627 0.89342 0.96277 0.90142 0.91166 0.89183 0.89309 0.91882 0.92326 0.92248 0.92534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.91 37.16 0.37 -1.56 16 2 C -0.12 -1.83 5.93 -26.73 -0.16 -1.99 16 3 C -0.14 -2.49 5.45 -26.74 -0.15 -2.63 16 4 C 0.15 3.12 5.71 -4.04 -0.02 3.10 16 5 N -0.58 -14.06 2.20 -173.24 -0.38 -14.44 16 6 C -0.25 -6.68 7.99 -15.06 -0.12 -6.80 16 7 H 0.05 1.44 7.89 -52.49 -0.41 1.03 16 8 C 0.02 0.46 4.97 -17.43 -0.09 0.37 16 9 N -0.89 -25.28 11.57 55.49 0.64 -24.64 16 10 Si 0.89 21.34 29.59 -169.99 -5.03 16.31 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 12 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 13 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 14 C 0.16 3.61 4.76 -4.04 -0.02 3.59 16 15 C -0.10 -2.01 2.39 -90.41 -0.22 -2.22 16 16 H 0.06 1.10 5.94 -51.93 -0.31 0.79 16 17 C -0.07 -1.41 4.63 -28.18 -0.13 -1.54 16 18 C -0.14 -2.38 9.80 -35.90 -0.35 -2.73 16 19 C -0.18 -2.80 9.80 -35.90 -0.35 -3.15 16 20 C -0.08 -1.23 6.12 -28.17 -0.17 -1.40 16 21 C -0.11 -1.94 5.31 -26.51 -0.14 -2.08 16 22 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 23 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.05 1.00 5.96 -51.93 -0.31 0.69 16 28 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 29 H 0.04 0.95 8.04 -51.93 -0.42 0.53 16 30 H 0.03 0.58 7.93 -51.93 -0.41 0.17 16 31 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 32 H 0.09 2.30 5.72 -51.93 -0.30 2.01 16 33 H 0.02 0.43 7.95 -51.93 -0.41 0.02 16 34 H 0.08 1.74 7.30 -51.93 -0.38 1.36 16 35 H 0.07 1.55 8.10 -51.93 -0.42 1.13 16 36 H 0.09 1.42 8.06 -52.49 -0.42 0.99 16 37 H 0.09 1.20 8.06 -52.49 -0.42 0.78 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.06 1.05 8.12 -51.93 -0.42 0.63 16 41 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 318.13 15.07 4.79 4.79 Total: -1.00 -27.13 318.13 -9.10 -36.23 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -7.58 Total: 0.77 kcal Atomic # 6 Polarization: -17.49 SS G_CDS: -1.55 Total: -19.04 kcal Atomic # 7 Polarization: -39.34 SS G_CDS: 0.26 Total: -39.07 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.31 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -27.13 -9.10 -36.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201423854.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.431 kcal (2) G-P(sol) polarization free energy of solvation -27.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds