Wall clock time and date at job start Sun Mar 29 2020 22:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47208 * 2 1 4 4 C 1.52995 * 109.47289 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.47341 * 179.97438 * 4 3 2 6 6 C 1.36935 * 119.99769 * 89.99745 * 5 4 3 7 7 H 1.08001 * 120.00403 * 318.71994 * 6 5 4 8 8 C 1.38811 * 119.99950 * 138.72307 * 6 5 4 9 9 N 1.31613 * 119.99969 * 342.31871 * 8 6 5 10 10 Si 1.86804 * 119.99954 * 162.31939 * 8 6 5 11 11 H 1.48504 * 109.46998 * 60.00075 * 10 8 6 12 12 H 1.48501 * 109.46768 * 179.97438 * 10 8 6 13 13 H 1.48495 * 109.47180 * 299.99863 * 10 8 6 14 14 C 1.46494 * 120.00193 * 269.99764 * 5 4 3 15 15 C 1.53002 * 109.47168 * 85.84165 * 14 5 4 16 16 H 1.09005 * 109.64202 * 302.18535 * 15 14 5 17 17 C 1.53022 * 109.64071 * 62.60282 * 15 14 5 18 18 C 1.50065 * 110.14815 * 169.12224 * 17 15 14 19 19 C 1.29444 * 124.07580 * 342.86858 * 18 17 15 20 20 C 1.50073 * 124.07243 * 0.48826 * 19 18 17 21 21 C 1.53036 * 110.14126 * 342.83745 * 20 19 18 22 22 H 1.09000 * 109.47447 * 60.00122 * 1 2 3 23 23 H 1.09003 * 109.47326 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.47159 * 300.00065 * 1 2 3 25 25 H 1.09004 * 109.47292 * 239.99813 * 2 1 3 26 26 H 1.09003 * 109.47053 * 120.00189 * 2 1 3 27 27 H 1.09003 * 109.47268 * 300.00057 * 3 2 1 28 28 H 1.09004 * 109.47147 * 59.99724 * 3 2 1 29 29 H 1.09000 * 109.47154 * 299.99749 * 4 3 2 30 30 H 1.08994 * 109.47370 * 59.99756 * 4 3 2 31 31 H 0.97001 * 120.00204 * 180.02562 * 9 8 6 32 32 H 1.08997 * 109.47427 * 205.84155 * 14 5 4 33 33 H 1.09007 * 109.46793 * 325.84682 * 14 5 4 34 34 H 1.09000 * 109.35649 * 289.32810 * 17 15 14 35 35 H 1.08997 * 109.36027 * 49.04541 * 17 15 14 36 36 H 1.08000 * 117.96563 * 162.89085 * 18 17 15 37 37 H 1.07994 * 117.96422 * 180.47303 * 19 18 17 38 38 H 1.09000 * 109.35437 * 103.05606 * 20 19 18 39 39 H 1.08995 * 109.35854 * 222.77556 * 20 19 18 40 40 H 1.09001 * 109.65318 * 289.77516 * 21 20 19 41 41 H 1.08999 * 109.63477 * 169.14212 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0584 2.8237 -0.0013 6 6 4.2870 3.4696 1.1844 7 1 3.5927 3.3562 2.0038 8 6 5.4113 4.2701 1.3331 9 7 6.4220 4.1465 0.4992 10 14 5.4896 5.5226 2.7167 11 1 5.3701 4.8257 4.0226 12 1 6.7861 6.2444 2.6582 13 1 4.3752 6.4930 2.5697 14 6 4.3021 3.5139 -1.2702 15 6 3.0003 4.1484 -1.7639 16 1 2.2366 3.3786 -1.8751 17 6 2.5273 5.2006 -0.7585 18 6 1.4098 6.0117 -1.3463 19 6 1.1372 6.0616 -2.6107 20 6 1.8940 5.3073 -3.6644 21 6 3.2422 4.8395 -3.1117 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 1.6767 1.9563 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 3.9337 0.9286 0.8891 30 1 3.9330 0.9288 -0.8908 31 1 7.2078 4.7056 0.6033 32 1 5.0520 4.2911 -1.1230 33 1 4.6608 2.7982 -2.0100 34 1 2.1763 4.7040 0.1460 35 1 3.3578 5.8609 -0.5089 36 1 0.7950 6.5899 -0.6725 37 1 0.3138 6.6848 -2.9270 38 1 1.3112 4.4409 -3.9772 39 1 2.0637 5.9575 -4.5226 40 1 3.8985 5.6982 -2.9706 41 1 3.6991 4.1358 -3.8076 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201423854.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:02 Heat of formation + Delta-G solvation = -11.475870 kcal Electronic energy + Delta-G solvation = -17905.679674 eV Core-core repulsion = 15398.531269 eV Total energy + Delta-G solvation = -2507.148405 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.75094 -37.57036 -35.48964 -33.37302 -32.18492 -31.41575 -29.28429 -27.29141 -25.28332 -23.87111 -22.76653 -21.67971 -21.38742 -18.88461 -18.29536 -16.96729 -16.49523 -16.27656 -15.55882 -15.26772 -15.12227 -14.65326 -14.29079 -14.05174 -13.68416 -13.53336 -13.29987 -13.05493 -13.02857 -12.87569 -12.71730 -12.37726 -12.25743 -12.07568 -11.85910 -11.83975 -11.69723 -11.43430 -11.09266 -10.92224 -10.81615 -10.41241 -9.76343 -8.41123 -7.75412 -5.43033 1.43508 1.46030 1.50446 1.51619 2.51271 3.29004 3.70715 3.97878 4.02376 4.17027 4.19854 4.35072 4.46171 4.51780 4.58455 4.61908 4.70035 4.77725 4.87014 4.94498 5.02264 5.07530 5.08964 5.10405 5.14206 5.16499 5.22339 5.30008 5.37985 5.43713 5.48843 5.55902 5.63953 5.68966 5.76463 5.89601 5.94464 6.19302 6.54646 7.25646 7.93852 8.49163 9.18708 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.013844 B = 0.011106 C = 0.007463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.995884 B = 2520.502333 C = 3751.029160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.119 4.119 3 C -0.121 4.121 4 C 0.146 3.854 5 N -0.598 5.598 6 C -0.250 4.250 7 H 0.046 0.954 8 C -0.029 4.029 9 N -0.920 5.920 10 Si 0.943 3.057 11 H -0.276 1.276 12 H -0.294 1.294 13 H -0.278 1.278 14 C 0.162 3.838 15 C -0.092 4.092 16 H 0.060 0.940 17 C -0.060 4.060 18 C -0.168 4.168 19 C -0.158 4.158 20 C -0.083 4.083 21 C -0.113 4.113 22 H 0.053 0.947 23 H 0.066 0.934 24 H 0.047 0.953 25 H 0.064 0.936 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.037 0.963 29 H 0.029 0.971 30 H 0.035 0.965 31 H 0.249 0.751 32 H 0.055 0.945 33 H 0.015 0.985 34 H 0.053 0.947 35 H 0.036 0.964 36 H 0.102 0.898 37 H 0.120 0.880 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.046 0.954 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.944 -1.294 -6.557 12.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.157 4.157 3 C -0.161 4.161 4 C 0.020 3.980 5 N -0.319 5.319 6 C -0.381 4.381 7 H 0.064 0.936 8 C -0.226 4.226 9 N -0.564 5.564 10 Si 0.771 3.229 11 H -0.202 1.202 12 H -0.220 1.220 13 H -0.204 1.204 14 C 0.036 3.964 15 C -0.113 4.113 16 H 0.078 0.922 17 C -0.097 4.097 18 C -0.186 4.186 19 C -0.176 4.176 20 C -0.120 4.120 21 C -0.151 4.151 22 H 0.072 0.928 23 H 0.085 0.915 24 H 0.066 0.934 25 H 0.082 0.918 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.056 0.944 29 H 0.048 0.952 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.073 0.927 33 H 0.034 0.966 34 H 0.072 0.928 35 H 0.054 0.946 36 H 0.120 0.880 37 H 0.138 0.862 38 H 0.098 0.902 39 H 0.104 0.896 40 H 0.064 0.936 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.759 -1.227 -6.547 12.654 hybrid contribution 0.567 0.814 1.088 1.472 sum -10.191 -0.413 -5.459 11.569 Atomic orbital electron populations 1.21720 0.95027 1.01940 1.01513 1.21468 0.96474 0.96005 1.01744 1.22064 0.97098 0.96513 1.00435 1.20967 0.93021 0.85897 0.98087 1.43878 1.76788 1.09318 1.01902 1.18950 1.02050 1.24462 0.92606 0.93639 1.25812 0.94401 1.02846 0.99522 1.70102 1.05315 1.40463 1.40505 0.85731 0.76548 0.80107 0.80474 1.20187 1.21976 1.20443 1.20788 0.94802 0.95428 0.85378 1.21717 0.98760 0.96556 0.94234 0.92168 1.20092 0.95378 0.95983 0.98240 1.22296 0.98894 1.00326 0.97047 1.22234 1.00617 1.00504 0.94272 1.20450 0.94732 0.99774 0.97051 1.21606 0.97557 0.99609 0.96370 0.92836 0.91515 0.93380 0.91762 0.92485 0.92867 0.94415 0.95249 0.94708 0.94146 0.92711 0.96633 0.92808 0.94582 0.88010 0.86224 0.90183 0.89604 0.93562 0.91454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.39 9.91 71.98 0.71 -2.67 16 2 C -0.12 -3.32 5.93 30.59 0.18 -3.13 16 3 C -0.12 -4.32 5.45 30.59 0.17 -4.15 16 4 C 0.15 6.23 5.71 86.38 0.49 6.72 16 5 N -0.60 -29.69 2.20 -702.02 -1.54 -31.23 16 6 C -0.25 -13.62 7.99 84.03 0.67 -12.94 16 7 H 0.05 2.52 7.89 -2.91 -0.02 2.50 16 8 C -0.03 -1.59 4.97 84.86 0.42 -1.17 16 9 N -0.92 -54.17 11.57 21.65 0.25 -53.92 16 10 Si 0.94 45.07 29.59 68.60 2.03 47.10 16 11 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 12 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 13 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 14 C 0.16 7.64 4.76 86.38 0.41 8.05 16 15 C -0.09 -3.58 2.39 -10.66 -0.03 -3.61 16 16 H 0.06 2.29 5.94 -2.38 -0.01 2.28 16 17 C -0.06 -2.43 4.63 29.66 0.14 -2.29 16 18 C -0.17 -5.49 9.80 27.04 0.27 -5.23 16 19 C -0.16 -4.36 9.80 27.04 0.27 -4.09 16 20 C -0.08 -2.15 6.12 29.66 0.18 -1.97 16 21 C -0.11 -3.68 5.31 30.74 0.16 -3.51 16 22 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 23 H 0.07 1.29 8.14 -2.39 -0.02 1.28 16 24 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 26 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.05 1.90 5.96 -2.39 -0.01 1.89 16 28 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 29 H 0.03 1.31 8.04 -2.39 -0.02 1.29 16 30 H 0.03 1.42 7.93 -2.39 -0.02 1.40 16 31 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 32 H 0.05 2.99 5.72 -2.39 -0.01 2.97 16 33 H 0.02 0.72 7.95 -2.38 -0.02 0.70 16 34 H 0.05 2.41 7.30 -2.39 -0.02 2.39 16 35 H 0.04 1.67 8.10 -2.39 -0.02 1.65 16 36 H 0.10 3.06 8.06 -2.91 -0.02 3.03 16 37 H 0.12 2.65 8.06 -2.91 -0.02 2.62 16 38 H 0.08 1.88 8.14 -2.39 -0.02 1.87 16 39 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.05 1.61 8.12 -2.39 -0.02 1.59 16 41 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -59.81 318.13 5.73 -54.08 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: 0.95 Total: 13.97 kcal Atomic # 6 Polarization: -34.04 SS G_CDS: 4.05 Total: -29.99 kcal Atomic # 7 Polarization: -83.86 SS G_CDS: -1.29 Total: -85.16 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -59.81 5.73 -54.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201423854.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.605 kcal (2) G-P(sol) polarization free energy of solvation -59.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds