Wall clock time and date at job start Sun Mar 29 2020 21:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 120.00283 * 2 1 4 4 H 1.48497 * 109.47336 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47013 * 299.99964 * 3 2 1 6 6 H 1.48495 * 109.47241 * 60.00106 * 3 2 1 7 7 C 1.37877 * 120.00047 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00173 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99570 * 359.97438 * 7 2 1 10 10 N 1.46905 * 109.47219 * 185.92269 * 9 7 2 11 11 C 1.46893 * 111.00297 * 195.50294 * 10 9 7 12 12 C 1.53001 * 109.47339 * 169.99763 * 11 10 9 13 13 C 1.53782 * 113.61386 * 274.13803 * 12 11 10 14 14 C 1.53956 * 87.01788 * 220.04761 * 13 12 11 15 15 C 1.53774 * 87.11359 * 25.35962 * 14 13 12 16 16 C 1.46898 * 110.99908 * 71.54518 * 10 9 7 17 17 C 1.55237 * 110.58355 * 24.87891 * 16 10 9 18 18 C 1.54890 * 102.59031 * 203.34049 * 17 16 10 19 19 C 1.54264 * 104.31141 * 37.92595 * 18 17 16 20 20 C 1.53870 * 106.60128 * 336.32925 * 19 18 17 21 21 H 0.97006 * 119.99742 * 359.97438 * 1 2 3 22 22 H 1.09006 * 109.47651 * 65.92351 * 9 7 2 23 23 H 1.09002 * 109.47153 * 305.91964 * 9 7 2 24 24 H 1.09000 * 109.47108 * 289.99725 * 11 10 9 25 25 H 1.09008 * 109.47379 * 49.99841 * 11 10 9 26 26 H 1.09000 * 112.84963 * 45.33040 * 12 11 10 27 27 H 1.08999 * 113.61310 * 334.56726 * 13 12 11 28 28 H 1.08996 * 113.61583 * 105.47105 * 13 12 11 29 29 H 1.09007 * 113.53588 * 270.81108 * 14 13 12 30 30 H 1.08999 * 113.67036 * 139.93723 * 14 13 12 31 31 H 1.08994 * 113.61918 * 220.08886 * 15 14 13 32 32 H 1.09009 * 113.68867 * 89.19684 * 15 14 13 33 33 H 1.08998 * 110.43276 * 147.46125 * 16 10 9 34 34 H 1.08997 * 110.89576 * 85.04323 * 17 16 10 35 35 H 1.09006 * 110.75959 * 321.56826 * 17 16 10 36 36 H 1.08999 * 110.47911 * 279.18566 * 18 17 16 37 37 H 1.08991 * 110.48654 * 156.67654 * 18 17 16 38 38 H 1.09003 * 110.02744 * 95.61414 * 19 18 17 39 39 H 1.09004 * 110.03160 * 216.99392 * 19 18 17 40 40 H 1.09004 * 110.03390 * 119.28794 * 20 19 18 41 41 H 1.09005 * 110.02889 * 240.66233 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8905 2.3965 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 7 2.1991 -3.6121 0.1418 11 6 1.5691 -4.8896 -0.2171 12 6 2.6387 -5.9806 -0.2989 13 6 3.3310 -6.0629 -1.6696 14 6 3.2782 -7.5937 -1.5145 15 6 2.0704 -7.3802 -0.5870 16 6 2.7525 -3.6616 1.5016 17 6 1.7800 -2.9945 2.5112 18 6 2.7221 -2.5957 3.6742 19 6 4.0171 -2.1337 2.9747 20 6 4.0364 -2.8114 1.5934 21 1 -0.4850 0.8401 0.0004 22 1 0.7058 -2.6040 -0.9386 23 1 0.5475 -2.5124 0.8320 24 1 0.8338 -5.1579 0.5415 25 1 1.0748 -4.7922 -1.1838 26 1 3.3336 -5.9558 0.5404 27 1 2.7208 -5.6859 -2.4903 28 1 4.3431 -5.6581 -1.6726 29 1 4.1491 -8.0103 -1.0083 30 1 3.0326 -8.1188 -2.4375 31 1 2.0661 -8.0372 0.2826 32 1 1.1141 -7.3639 -1.1100 33 1 2.9558 -4.6922 1.7924 34 1 1.0256 -3.7040 2.8510 35 1 1.3129 -2.1127 2.0727 36 1 2.9205 -3.4543 4.3158 37 1 2.2892 -1.7800 4.2531 38 1 4.0125 -1.0499 2.8589 39 1 4.8860 -2.4433 3.5555 40 1 4.0413 -2.0564 0.8071 41 1 4.9152 -3.4499 1.5030 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202740219.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:48 Heat of formation + Delta-G solvation = 19.901716 kcal Electronic energy + Delta-G solvation = -18014.606673 eV Core-core repulsion = 15508.818902 eV Total energy + Delta-G solvation = -2505.787771 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.09044 -37.72514 -34.19178 -32.44397 -28.52342 -27.96807 -27.10154 -25.39320 -25.07679 -22.22270 -21.51007 -19.62674 -19.19138 -18.19044 -16.54032 -15.51552 -15.08022 -14.94548 -14.45613 -14.21873 -13.68146 -13.11900 -12.90988 -12.38766 -12.21066 -12.16987 -11.76092 -11.23725 -11.15324 -10.95475 -10.80854 -10.62920 -10.45626 -10.36288 -10.24340 -10.22027 -10.05782 -9.93531 -9.83760 -9.42947 -9.10901 -8.81051 -8.36145 -7.01681 -5.97841 -3.97368 3.32380 3.40617 3.44663 4.45114 4.76467 4.92161 5.01180 5.09876 5.31214 5.36894 5.43829 5.48006 5.69866 5.79710 5.81958 5.98116 6.00495 6.04666 6.07758 6.18188 6.26834 6.30577 6.34189 6.37430 6.42993 6.48979 6.60144 6.61130 6.67834 6.77721 6.86214 7.03066 7.12610 7.20297 7.45160 7.57056 8.00056 8.22867 8.32123 8.65645 9.12764 9.66169 11.12429 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.023778 B = 0.007891 C = 0.006846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.291563 B = 3547.710121 C = 4088.711162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.054 3.946 3 Si 0.889 3.111 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.496 4.496 8 H 0.072 0.928 9 C 0.182 3.818 10 N -0.529 5.529 11 C 0.066 3.934 12 C -0.103 4.103 13 C -0.123 4.123 14 C -0.146 4.146 15 C -0.139 4.139 16 C 0.096 3.904 17 C -0.164 4.164 18 C -0.117 4.117 19 C -0.117 4.117 20 C -0.117 4.117 21 H 0.259 0.741 22 H 0.019 0.981 23 H 0.013 0.987 24 H 0.019 0.981 25 H 0.066 0.934 26 H 0.086 0.914 27 H 0.079 0.921 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.077 0.923 33 H 0.055 0.945 34 H 0.041 0.959 35 H 0.121 0.879 36 H 0.048 0.952 37 H 0.054 0.946 38 H 0.060 0.940 39 H 0.046 0.954 40 H 0.097 0.903 41 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.278 -10.569 2.165 12.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.146 4.146 3 Si 0.717 3.283 4 H -0.196 1.196 5 H -0.212 1.212 6 H -0.212 1.212 7 C -0.534 4.534 8 H 0.090 0.910 9 C 0.057 3.943 10 N -0.252 5.252 11 C -0.063 4.063 12 C -0.121 4.121 13 C -0.161 4.161 14 C -0.183 4.183 15 C -0.177 4.177 16 C -0.013 4.013 17 C -0.203 4.203 18 C -0.155 4.155 19 C -0.155 4.155 20 C -0.155 4.155 21 H 0.068 0.932 22 H 0.037 0.963 23 H 0.031 0.969 24 H 0.037 0.963 25 H 0.084 0.916 26 H 0.105 0.895 27 H 0.097 0.903 28 H 0.082 0.918 29 H 0.092 0.908 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.096 0.904 33 H 0.074 0.926 34 H 0.060 0.940 35 H 0.139 0.861 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.065 0.935 40 H 0.115 0.885 41 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 5.516 -10.364 1.815 11.880 hybrid contribution -0.335 0.808 0.634 1.080 sum 5.181 -9.556 2.449 11.142 Atomic orbital electron populations 1.69968 1.05956 1.26417 1.51738 1.24969 0.94761 0.99054 0.95864 0.86579 0.80265 0.84039 0.77431 1.19630 1.21208 1.21230 1.21379 0.93762 0.89626 1.48664 0.90988 1.19991 0.90459 0.87691 0.96187 1.62233 1.37178 1.02567 1.23190 1.22036 0.94285 0.90260 0.99720 1.22576 0.98002 0.93494 0.98047 1.22840 1.01069 0.94469 0.97677 1.22867 0.98400 0.97546 0.99489 1.22936 0.98030 0.97396 0.99351 1.22349 0.94547 0.96553 0.87875 1.23463 0.97593 1.03289 0.95913 1.22189 0.96377 0.99423 0.97489 1.22029 0.96468 1.00600 0.96449 1.22363 0.95825 0.99691 0.97620 0.93161 0.96346 0.96945 0.96287 0.91591 0.89547 0.90286 0.91757 0.90797 0.92079 0.92210 0.90391 0.92646 0.94001 0.86134 0.93360 0.92688 0.92114 0.93518 0.88488 0.94033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.20 13.29 55.43 0.74 -25.46 16 2 C 0.05 1.49 5.46 -17.82 -0.10 1.39 16 3 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 6 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 7 C -0.50 -13.28 7.34 -34.44 -0.25 -13.53 16 8 H 0.07 1.92 4.96 -52.49 -0.26 1.66 16 9 C 0.18 4.56 4.26 -4.97 -0.02 4.54 16 10 N -0.53 -11.12 4.38 -225.87 -0.99 -12.11 16 11 C 0.07 1.19 4.72 -3.83 -0.02 1.17 16 12 C -0.10 -1.54 3.59 -89.81 -0.32 -1.86 16 13 C -0.12 -1.74 7.65 -25.83 -0.20 -1.93 16 14 C -0.15 -1.71 8.09 -25.83 -0.21 -1.92 16 15 C -0.14 -1.74 7.65 -25.92 -0.20 -1.94 16 16 C 0.10 1.85 2.64 -65.87 -0.17 1.68 16 17 C -0.16 -3.29 5.34 -24.55 -0.13 -3.42 16 18 C -0.12 -2.03 6.82 -25.07 -0.17 -2.20 16 19 C -0.12 -2.05 6.80 -25.62 -0.17 -2.22 16 20 C -0.12 -2.22 6.11 -25.62 -0.16 -2.38 16 21 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 22 H 0.02 0.51 7.82 -51.93 -0.41 0.10 16 23 H 0.01 0.34 5.47 -51.93 -0.28 0.06 16 24 H 0.02 0.35 8.12 -51.93 -0.42 -0.07 16 25 H 0.07 1.22 7.60 -51.92 -0.39 0.83 16 26 H 0.09 1.33 6.39 -51.93 -0.33 1.00 16 27 H 0.08 1.15 7.92 -51.93 -0.41 0.74 16 28 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.07 0.81 8.14 -51.92 -0.42 0.38 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.08 0.96 8.10 -51.92 -0.42 0.54 16 33 H 0.06 0.99 6.03 -51.93 -0.31 0.68 16 34 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.12 2.91 4.55 -51.93 -0.24 2.67 16 36 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 39 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.10 2.11 4.83 -51.93 -0.25 1.86 16 41 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 306.49 15.07 4.62 4.62 Total: -1.00 -27.54 306.49 -9.87 -37.41 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -7.09 Total: 1.78 kcal Atomic # 6 Polarization: -20.50 SS G_CDS: -2.12 Total: -22.62 kcal Atomic # 7 Polarization: -37.32 SS G_CDS: -0.25 Total: -37.57 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -27.54 -9.87 -37.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202740219.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.313 kcal (2) G-P(sol) polarization free energy of solvation -27.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds