Wall clock time and date at job start Sun Mar 29 2020 21:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 120.00283 * 2 1 4 4 H 1.48497 * 109.47336 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47013 * 299.99964 * 3 2 1 6 6 H 1.48495 * 109.47241 * 60.00106 * 3 2 1 7 7 C 1.37877 * 120.00047 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00173 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99570 * 359.97438 * 7 2 1 10 10 N 1.46905 * 109.47219 * 185.92269 * 9 7 2 11 11 C 1.46893 * 111.00297 * 195.50294 * 10 9 7 12 12 C 1.53001 * 109.47339 * 169.99763 * 11 10 9 13 13 C 1.53782 * 113.61386 * 274.13803 * 12 11 10 14 14 C 1.53956 * 87.01788 * 220.04761 * 13 12 11 15 15 C 1.53774 * 87.11359 * 25.35962 * 14 13 12 16 16 C 1.46898 * 110.99908 * 71.54518 * 10 9 7 17 17 C 1.55237 * 110.58355 * 24.87891 * 16 10 9 18 18 C 1.54890 * 102.59031 * 203.34049 * 17 16 10 19 19 C 1.54264 * 104.31141 * 37.92595 * 18 17 16 20 20 C 1.53870 * 106.60128 * 336.32925 * 19 18 17 21 21 H 0.97006 * 119.99742 * 359.97438 * 1 2 3 22 22 H 1.09006 * 109.47651 * 65.92351 * 9 7 2 23 23 H 1.09002 * 109.47153 * 305.91964 * 9 7 2 24 24 H 1.09000 * 109.47108 * 289.99725 * 11 10 9 25 25 H 1.09008 * 109.47379 * 49.99841 * 11 10 9 26 26 H 1.09000 * 112.84963 * 45.33040 * 12 11 10 27 27 H 1.08999 * 113.61310 * 334.56726 * 13 12 11 28 28 H 1.08996 * 113.61583 * 105.47105 * 13 12 11 29 29 H 1.09007 * 113.53588 * 270.81108 * 14 13 12 30 30 H 1.08999 * 113.67036 * 139.93723 * 14 13 12 31 31 H 1.08994 * 113.61918 * 220.08886 * 15 14 13 32 32 H 1.09009 * 113.68867 * 89.19684 * 15 14 13 33 33 H 1.08998 * 110.43276 * 147.46125 * 16 10 9 34 34 H 1.08997 * 110.89576 * 85.04323 * 17 16 10 35 35 H 1.09006 * 110.75959 * 321.56826 * 17 16 10 36 36 H 1.08999 * 110.47911 * 279.18566 * 18 17 16 37 37 H 1.08991 * 110.48654 * 156.67654 * 18 17 16 38 38 H 1.09003 * 110.02744 * 95.61414 * 19 18 17 39 39 H 1.09004 * 110.03160 * 216.99392 * 19 18 17 40 40 H 1.09004 * 110.03390 * 119.28794 * 20 19 18 41 41 H 1.09005 * 110.02889 * 240.66233 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8905 2.3965 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 7 2.1991 -3.6121 0.1418 11 6 1.5691 -4.8896 -0.2171 12 6 2.6387 -5.9806 -0.2989 13 6 3.3310 -6.0629 -1.6696 14 6 3.2782 -7.5937 -1.5145 15 6 2.0704 -7.3802 -0.5870 16 6 2.7525 -3.6616 1.5016 17 6 1.7800 -2.9945 2.5112 18 6 2.7221 -2.5957 3.6742 19 6 4.0171 -2.1337 2.9747 20 6 4.0364 -2.8114 1.5934 21 1 -0.4850 0.8401 0.0004 22 1 0.7058 -2.6040 -0.9386 23 1 0.5475 -2.5124 0.8320 24 1 0.8338 -5.1579 0.5415 25 1 1.0748 -4.7922 -1.1838 26 1 3.3336 -5.9558 0.5404 27 1 2.7208 -5.6859 -2.4903 28 1 4.3431 -5.6581 -1.6726 29 1 4.1491 -8.0103 -1.0083 30 1 3.0326 -8.1188 -2.4375 31 1 2.0661 -8.0372 0.2826 32 1 1.1141 -7.3639 -1.1100 33 1 2.9558 -4.6922 1.7924 34 1 1.0256 -3.7040 2.8510 35 1 1.3129 -2.1127 2.0727 36 1 2.9205 -3.4543 4.3158 37 1 2.2892 -1.7800 4.2531 38 1 4.0125 -1.0499 2.8589 39 1 4.8860 -2.4433 3.5555 40 1 4.0413 -2.0564 0.8071 41 1 4.9152 -3.4499 1.5030 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202740219.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:48 Heat of formation + Delta-G solvation = 5.336858 kcal Electronic energy + Delta-G solvation = -18015.238252 eV Core-core repulsion = 15508.818902 eV Total energy + Delta-G solvation = -2506.419351 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.50699 -39.04148 -35.82098 -34.46830 -30.20312 -29.48727 -28.76247 -26.83630 -26.32733 -24.00437 -22.93732 -21.09844 -20.47008 -19.68935 -18.52078 -16.97803 -16.78895 -16.40211 -16.09752 -15.58396 -15.12168 -14.64432 -14.49067 -14.23990 -13.71723 -13.32480 -13.23200 -12.88568 -12.79997 -12.62875 -12.39381 -12.24455 -12.08243 -11.91300 -11.73633 -11.62717 -11.53766 -11.22708 -11.06259 -10.94124 -10.79217 -10.63236 -10.47911 -8.76083 -8.11310 -6.17361 1.39376 1.41457 1.53070 2.43551 3.21376 3.28306 3.83643 3.88843 3.92513 3.95593 4.01911 4.13002 4.31140 4.51282 4.55174 4.64111 4.74710 4.81987 4.82657 4.90667 4.93780 4.96348 4.99084 5.06647 5.10246 5.16009 5.21452 5.24004 5.28042 5.31023 5.37002 5.48723 5.55776 5.60162 5.71912 5.75329 5.94863 6.24265 6.52023 6.81417 7.01830 7.50681 8.99086 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.023778 B = 0.007891 C = 0.006846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.291563 B = 3547.710121 C = 4088.711162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.003 3.997 3 Si 0.951 3.049 4 H -0.262 1.262 5 H -0.284 1.284 6 H -0.282 1.282 7 C -0.496 4.496 8 H 0.074 0.926 9 C 0.199 3.801 10 N -0.534 5.534 11 C 0.066 3.934 12 C -0.104 4.104 13 C -0.130 4.130 14 C -0.130 4.130 15 C -0.132 4.132 16 C 0.096 3.904 17 C -0.165 4.165 18 C -0.110 4.110 19 C -0.115 4.115 20 C -0.116 4.116 21 H 0.259 0.741 22 H -0.016 1.016 23 H -0.008 1.008 24 H 0.015 0.985 25 H 0.052 0.948 26 H 0.089 0.911 27 H 0.067 0.933 28 H 0.060 0.940 29 H 0.089 0.911 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.045 0.955 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.053 0.947 38 H 0.044 0.956 39 H 0.080 0.920 40 H 0.064 0.936 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.295 -12.020 3.120 14.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.194 4.194 3 Si 0.777 3.223 4 H -0.186 1.186 5 H -0.210 1.210 6 H -0.208 1.208 7 C -0.535 4.535 8 H 0.092 0.908 9 C 0.072 3.928 10 N -0.257 5.257 11 C -0.062 4.062 12 C -0.123 4.123 13 C -0.168 4.168 14 C -0.167 4.167 15 C -0.170 4.170 16 C -0.012 4.012 17 C -0.204 4.204 18 C -0.148 4.148 19 C -0.153 4.153 20 C -0.154 4.154 21 H 0.068 0.932 22 H 0.002 0.998 23 H 0.010 0.990 24 H 0.033 0.967 25 H 0.070 0.930 26 H 0.107 0.893 27 H 0.085 0.915 28 H 0.078 0.922 29 H 0.107 0.893 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.063 0.937 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.072 0.928 38 H 0.062 0.938 39 H 0.098 0.902 40 H 0.082 0.918 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.550 -11.829 2.770 14.304 hybrid contribution -0.991 1.215 0.325 1.601 sum 6.560 -10.615 3.096 12.856 Atomic orbital electron populations 1.70095 1.07518 1.27174 1.53164 1.25749 0.95470 1.02463 0.95723 0.85597 0.79416 0.79937 0.77355 1.18621 1.21037 1.20839 1.21649 0.93902 0.90415 1.47491 0.90850 1.19640 0.90482 0.89141 0.93489 1.62172 1.36076 1.02677 1.24781 1.22106 0.95418 0.89993 0.98703 1.22583 0.97289 0.93712 0.98692 1.22859 1.00411 0.96828 0.96685 1.22809 0.98429 0.95448 1.00006 1.22913 0.98383 0.95530 1.00172 1.22458 0.94413 0.97862 0.86511 1.23316 0.98292 1.01496 0.97297 1.22180 0.95421 1.00556 0.96684 1.22025 0.97817 0.99496 0.95961 1.22307 0.96420 0.99156 0.97506 0.93205 0.99794 0.99025 0.96721 0.92964 0.89276 0.91473 0.92161 0.89260 0.90692 0.90618 0.90451 0.90311 0.93659 0.90731 0.90364 0.92818 0.93755 0.90182 0.91787 0.91681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.51 13.29 21.45 0.28 -56.23 16 2 C 0.00 0.16 5.46 84.66 0.46 0.63 16 3 Si 0.95 44.65 29.54 68.60 2.03 46.68 16 4 H -0.26 -11.79 7.11 99.48 0.71 -11.09 16 5 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 6 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 7 C -0.50 -27.41 7.34 25.60 0.19 -27.22 16 8 H 0.07 4.00 4.96 -2.91 -0.01 3.98 16 9 C 0.20 10.46 4.26 85.56 0.36 10.82 16 10 N -0.53 -22.86 4.38 -868.53 -3.81 -26.67 16 11 C 0.07 2.42 4.72 86.30 0.41 2.82 16 12 C -0.10 -2.96 3.59 -10.27 -0.04 -3.00 16 13 C -0.13 -3.49 7.65 31.18 0.24 -3.26 16 14 C -0.13 -2.65 8.09 31.18 0.25 -2.40 16 15 C -0.13 -2.97 7.65 31.12 0.24 -2.73 16 16 C 0.10 3.63 2.64 46.11 0.12 3.75 16 17 C -0.17 -6.61 5.34 32.01 0.17 -6.44 16 18 C -0.11 -3.62 6.82 31.67 0.22 -3.40 16 19 C -0.12 -3.75 6.80 31.32 0.21 -3.54 16 20 C -0.12 -4.21 6.11 31.32 0.19 -4.02 16 21 H 0.26 14.83 8.31 -92.70 -0.77 14.06 16 22 H -0.02 -0.93 7.82 -2.38 -0.02 -0.95 16 23 H -0.01 -0.44 5.47 -2.39 -0.01 -0.45 16 24 H 0.01 0.54 8.12 -2.39 -0.02 0.52 16 25 H 0.05 2.02 7.60 -2.38 -0.02 2.00 16 26 H 0.09 2.51 6.39 -2.39 -0.02 2.49 16 27 H 0.07 1.94 7.92 -2.39 -0.02 1.92 16 28 H 0.06 1.64 8.14 -2.39 -0.02 1.63 16 29 H 0.09 1.59 8.14 -2.38 -0.02 1.57 16 30 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.08 1.76 8.10 -2.38 -0.02 1.74 16 33 H 0.08 2.63 6.03 -2.39 -0.01 2.61 16 34 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.07 3.73 4.55 -2.38 -0.01 3.72 16 36 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.08 2.09 8.14 -2.38 -0.02 2.07 16 40 H 0.06 2.77 4.83 -2.39 -0.01 2.76 16 41 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 Total: -1.00 -61.02 306.49 2.51 -58.51 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: 0.98 Total: 15.69 kcal Atomic # 6 Polarization: -41.02 SS G_CDS: 3.03 Total: -37.99 kcal Atomic # 7 Polarization: -79.37 SS G_CDS: -3.52 Total: -82.89 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -61.02 2.51 -58.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202740219.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.848 kcal (2) G-P(sol) polarization free energy of solvation -61.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds