Wall clock time and date at job start Sun Mar 29 2020 22:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.30528 * 124.44929 * 2 1 4 4 C 1.51097 * 111.10519 * 179.97438 * 3 2 1 5 5 C 1.54634 * 104.72356 * 16.43859 * 4 3 2 6 6 H 1.09006 * 111.06784 * 93.41614 * 5 4 3 7 7 C 1.52995 * 111.03540 * 217.32756 * 5 4 3 8 8 C 1.53000 * 109.47596 * 287.02503 * 7 5 4 9 9 N 1.46506 * 109.47282 * 179.97438 * 8 7 5 10 10 C 1.46497 * 119.99839 * 270.00334 * 9 8 7 11 11 C 1.36932 * 119.99794 * 90.00000 * 9 8 7 12 12 H 1.08002 * 120.00360 * 22.34709 * 11 9 8 13 13 C 1.38817 * 119.99755 * 202.34202 * 11 9 8 14 14 N 1.31615 * 119.99921 * 11.35091 * 13 11 9 15 15 Si 1.86802 * 119.99930 * 191.34417 * 13 11 9 16 16 H 1.48507 * 109.47099 * 60.00499 * 15 13 11 17 17 H 1.48497 * 109.46824 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47315 * 300.00670 * 15 13 11 19 19 C 1.51095 * 124.44831 * 179.97438 * 2 1 3 20 20 C 1.53008 * 110.38723 * 44.77458 * 19 2 1 21 21 C 1.52998 * 110.48696 * 282.44844 * 19 2 1 22 22 H 1.09000 * 109.46980 * 270.02224 * 1 2 3 23 23 H 1.09005 * 109.47029 * 30.02261 * 1 2 3 24 24 H 1.08998 * 109.47398 * 150.02439 * 1 2 3 25 25 H 1.07997 * 124.44525 * 0.02562 * 3 2 1 26 26 H 1.09000 * 110.39269 * 257.62562 * 4 3 2 27 27 H 1.09002 * 110.38229 * 135.24854 * 4 3 2 28 28 H 1.09002 * 109.47371 * 47.02831 * 7 5 4 29 29 H 1.09005 * 109.47154 * 167.02018 * 7 5 4 30 30 H 1.09003 * 109.47228 * 299.99780 * 8 7 5 31 31 H 1.08998 * 109.46958 * 60.00178 * 8 7 5 32 32 H 1.08995 * 109.47807 * 94.21009 * 10 9 8 33 33 H 1.09001 * 109.47096 * 214.21192 * 10 9 8 34 34 H 1.09000 * 109.47154 * 334.20487 * 10 9 8 35 35 H 0.97006 * 119.99912 * 179.97438 * 14 13 11 36 36 H 1.08996 * 109.47056 * 175.30222 * 20 19 2 37 37 H 1.08998 * 109.47096 * 295.30195 * 20 19 2 38 38 H 1.08999 * 109.46798 * 55.29959 * 20 19 2 39 39 H 1.09001 * 109.47068 * 304.63704 * 21 19 2 40 40 H 1.08998 * 109.47221 * 64.63536 * 21 19 2 41 41 H 1.09002 * 109.47478 * 184.63958 * 21 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2454 1.0764 0.0000 4 6 3.7156 0.7276 0.0006 5 6 3.7670 -0.7589 -0.4222 6 1 3.9072 -0.8554 -1.4989 7 6 4.8609 -1.5091 0.3403 8 6 6.2328 -1.0905 -0.1924 9 7 7.2802 -1.8085 0.5382 10 6 7.8498 -1.2309 1.7581 11 6 7.7267 -3.0195 0.0808 12 1 7.5998 -3.2845 -0.9585 13 6 8.3425 -3.9067 0.9530 14 7 8.3007 -3.6898 2.2505 15 14 9.2304 -5.4084 0.2852 16 1 10.3263 -4.9744 -0.6181 17 1 9.7981 -6.1899 1.4130 18 1 8.2722 -6.2547 -0.4703 19 6 2.3617 -1.2460 0.0006 20 6 1.8236 -2.2619 -1.0092 21 6 2.4098 -1.8617 1.4003 22 1 -0.3633 0.0004 1.0277 23 1 -0.3633 0.8898 -0.5142 24 1 -0.3634 -0.8902 -0.5134 25 1 1.8565 2.0839 0.0004 26 1 4.1353 0.8533 0.9987 27 1 4.2527 1.3459 -0.7187 28 1 4.7943 -1.2688 1.4014 29 1 4.7294 -2.5823 0.2020 30 1 6.2994 -1.3309 -1.2535 31 1 6.3642 -0.0174 -0.0540 32 1 7.3209 -1.6225 2.6269 33 1 8.9053 -1.4942 1.8262 34 1 7.7472 -0.1462 1.7287 35 1 8.7307 -4.3099 2.8600 36 1 2.4966 -3.1179 -1.0571 37 1 0.8338 -2.5950 -0.6971 38 1 1.7571 -1.7965 -1.9925 39 1 2.7563 -1.1144 2.1143 40 1 1.4129 -2.1996 1.6831 41 1 3.0947 -2.7097 1.4010 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207278990.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:13 Heat of formation + Delta-G solvation = 17.694296 kcal Electronic energy + Delta-G solvation = -17609.204516 eV Core-core repulsion = 15103.321024 eV Total energy + Delta-G solvation = -2505.883492 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.80805 -35.67752 -32.89892 -32.04776 -30.89656 -28.68454 -27.12083 -25.83176 -25.10048 -23.71276 -22.46574 -20.43600 -18.78730 -17.22032 -16.60540 -15.25208 -14.74168 -14.63206 -13.95732 -13.72394 -13.35257 -13.26403 -12.99182 -12.73358 -12.39522 -12.31520 -12.17334 -11.72433 -11.31460 -11.19731 -11.09789 -10.84965 -10.78410 -10.64101 -10.46181 -10.35110 -10.20582 -10.05636 -9.95399 -9.63451 -9.49594 -8.48958 -8.45832 -6.64462 -5.63782 -3.08296 2.37847 3.43191 3.48247 3.49382 4.56983 4.70648 4.77308 5.15699 5.26996 5.40570 5.48379 5.51325 5.58116 5.62409 5.75094 5.80581 5.86027 5.88911 5.92652 6.03182 6.10238 6.14926 6.18889 6.23268 6.40911 6.45034 6.49837 6.55134 6.67646 6.74401 6.79804 6.86988 7.08627 7.18070 7.25265 7.47620 7.81750 7.88504 8.49832 9.33764 9.98155 10.47488 11.41621 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.036440 B = 0.005762 C = 0.005421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.207389 B = 4858.251888 C = 5163.637744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.129 4.129 3 C -0.172 4.172 4 C -0.092 4.092 5 C -0.080 4.080 6 H 0.073 0.927 7 C -0.124 4.124 8 C 0.153 3.847 9 N -0.605 5.605 10 C 0.166 3.834 11 C -0.249 4.249 12 H 0.066 0.934 13 C -0.001 4.001 14 N -0.911 5.911 15 Si 0.903 3.097 16 H -0.285 1.285 17 H -0.291 1.291 18 H -0.284 1.284 19 C -0.032 4.032 20 C -0.136 4.136 21 C -0.133 4.133 22 H 0.063 0.937 23 H 0.059 0.941 24 H 0.063 0.937 25 H 0.115 0.885 26 H 0.074 0.926 27 H 0.064 0.936 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.038 0.962 31 H 0.034 0.966 32 H 0.026 0.974 33 H 0.042 0.958 34 H -0.006 1.006 35 H 0.251 0.749 36 H 0.059 0.941 37 H 0.050 0.950 38 H 0.051 0.949 39 H 0.053 0.947 40 H 0.044 0.956 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.440 7.321 -3.919 15.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.129 4.129 3 C -0.190 4.190 4 C -0.129 4.129 5 C -0.099 4.099 6 H 0.092 0.908 7 C -0.164 4.164 8 C 0.026 3.974 9 N -0.328 5.328 10 C 0.021 3.979 11 C -0.379 4.379 12 H 0.084 0.916 13 C -0.198 4.198 14 N -0.557 5.557 15 Si 0.733 3.267 16 H -0.212 1.212 17 H -0.217 1.217 18 H -0.210 1.210 19 C -0.032 4.032 20 C -0.194 4.194 21 C -0.190 4.190 22 H 0.082 0.918 23 H 0.078 0.922 24 H 0.082 0.918 25 H 0.133 0.867 26 H 0.092 0.908 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.044 0.956 33 H 0.061 0.939 34 H 0.013 0.987 35 H 0.061 0.939 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.064 0.936 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -13.325 7.219 -3.770 15.617 hybrid contribution 0.378 -0.848 -0.174 0.944 sum -12.947 6.371 -3.945 14.959 Atomic orbital electron populations 1.20528 0.91942 1.01989 1.01632 1.21964 0.94902 0.95422 1.00619 1.23113 0.95937 0.97543 1.02435 1.21388 0.93527 0.96456 1.01539 1.22154 0.93644 0.94102 0.99987 0.90841 1.22289 0.94964 0.99940 0.99231 1.20839 0.87261 0.94221 0.95123 1.43968 1.40059 1.20523 1.28220 1.20759 0.98218 0.90332 0.88600 1.19174 1.33166 0.92644 0.92901 0.91596 1.25000 1.01884 0.97803 0.95145 1.70058 1.47221 1.37638 1.00760 0.86364 0.79821 0.82900 0.77626 1.21174 1.21698 1.21048 1.20348 0.93953 0.93051 0.95877 1.21822 1.00421 0.98820 0.98289 1.21813 1.00961 1.01070 0.95127 0.91845 0.92240 0.91838 0.86672 0.90767 0.91692 0.92475 0.91892 0.94313 0.94772 0.95563 0.93893 0.98729 0.93861 0.92215 0.93129 0.92966 0.92741 0.93643 0.91373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.06 10.19 36.01 0.37 -0.69 16 2 C -0.13 -1.63 5.02 -100.74 -0.51 -2.13 16 3 C -0.17 -2.19 10.59 -35.70 -0.38 -2.57 16 4 C -0.09 -1.29 5.87 -26.83 -0.16 -1.45 16 5 C -0.08 -1.22 2.55 -88.91 -0.23 -1.45 16 6 H 0.07 1.12 7.91 -51.93 -0.41 0.71 16 7 C -0.12 -2.34 3.69 -26.73 -0.10 -2.44 16 8 C 0.15 3.22 5.61 -4.04 -0.02 3.20 16 9 N -0.60 -15.68 2.93 -181.12 -0.53 -16.21 16 10 C 0.17 4.23 9.01 59.85 0.54 4.77 16 11 C -0.25 -7.01 9.67 -15.06 -0.15 -7.15 16 12 H 0.07 1.82 7.84 -52.49 -0.41 1.40 16 13 C 0.00 -0.02 5.13 -17.43 -0.09 -0.11 16 14 N -0.91 -27.09 10.58 55.49 0.59 -26.51 16 15 Si 0.90 22.27 29.57 -169.99 -5.03 17.24 16 16 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 17 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 18 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 19 C -0.03 -0.45 0.80 -154.61 -0.12 -0.57 16 20 C -0.14 -1.75 8.00 37.16 0.30 -1.45 16 21 C -0.13 -1.93 7.39 37.16 0.27 -1.65 16 22 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 24 H 0.06 0.61 6.80 -51.93 -0.35 0.26 16 25 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 26 H 0.07 1.10 7.74 -51.93 -0.40 0.70 16 27 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.06 1.14 6.87 -51.93 -0.36 0.79 16 29 H 0.06 1.33 7.48 -51.93 -0.39 0.94 16 30 H 0.04 0.81 8.03 -51.93 -0.42 0.39 16 31 H 0.03 0.67 7.48 -51.93 -0.39 0.28 16 32 H 0.03 0.72 7.42 -51.93 -0.39 0.33 16 33 H 0.04 1.17 7.19 -51.93 -0.37 0.80 16 34 H -0.01 -0.13 7.84 -51.93 -0.41 -0.54 16 35 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.05 0.58 7.29 -51.93 -0.38 0.20 16 38 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.05 0.82 7.78 -51.93 -0.40 0.41 16 40 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.07 1.10 6.64 -51.93 -0.34 0.76 16 LS Contribution 317.45 15.07 4.78 4.78 Total: -1.00 -29.60 317.45 -7.97 -37.57 By element: Atomic # 1 Polarization: 4.34 SS G_CDS: -7.52 Total: -3.17 kcal Atomic # 6 Polarization: -13.43 SS G_CDS: -0.27 Total: -13.70 kcal Atomic # 7 Polarization: -42.78 SS G_CDS: 0.06 Total: -42.72 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.03 Total: 17.24 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.60 -7.97 -37.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207278990.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.260 kcal (2) G-P(sol) polarization free energy of solvation -29.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds