Wall clock time and date at job start Sun Mar 29 2020 22:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.30528 * 124.44929 * 2 1 4 4 C 1.51097 * 111.10519 * 179.97438 * 3 2 1 5 5 C 1.54634 * 104.72356 * 16.43859 * 4 3 2 6 6 H 1.09006 * 111.06784 * 93.41614 * 5 4 3 7 7 C 1.52995 * 111.03540 * 217.32756 * 5 4 3 8 8 C 1.53000 * 109.47596 * 287.02503 * 7 5 4 9 9 N 1.46506 * 109.47282 * 179.97438 * 8 7 5 10 10 C 1.46497 * 119.99839 * 270.00334 * 9 8 7 11 11 C 1.36932 * 119.99794 * 90.00000 * 9 8 7 12 12 H 1.08002 * 120.00360 * 22.34709 * 11 9 8 13 13 C 1.38817 * 119.99755 * 202.34202 * 11 9 8 14 14 N 1.31615 * 119.99921 * 11.35091 * 13 11 9 15 15 Si 1.86802 * 119.99930 * 191.34417 * 13 11 9 16 16 H 1.48507 * 109.47099 * 60.00499 * 15 13 11 17 17 H 1.48497 * 109.46824 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47315 * 300.00670 * 15 13 11 19 19 C 1.51095 * 124.44831 * 179.97438 * 2 1 3 20 20 C 1.53008 * 110.38723 * 44.77458 * 19 2 1 21 21 C 1.52998 * 110.48696 * 282.44844 * 19 2 1 22 22 H 1.09000 * 109.46980 * 270.02224 * 1 2 3 23 23 H 1.09005 * 109.47029 * 30.02261 * 1 2 3 24 24 H 1.08998 * 109.47398 * 150.02439 * 1 2 3 25 25 H 1.07997 * 124.44525 * 0.02562 * 3 2 1 26 26 H 1.09000 * 110.39269 * 257.62562 * 4 3 2 27 27 H 1.09002 * 110.38229 * 135.24854 * 4 3 2 28 28 H 1.09002 * 109.47371 * 47.02831 * 7 5 4 29 29 H 1.09005 * 109.47154 * 167.02018 * 7 5 4 30 30 H 1.09003 * 109.47228 * 299.99780 * 8 7 5 31 31 H 1.08998 * 109.46958 * 60.00178 * 8 7 5 32 32 H 1.08995 * 109.47807 * 94.21009 * 10 9 8 33 33 H 1.09001 * 109.47096 * 214.21192 * 10 9 8 34 34 H 1.09000 * 109.47154 * 334.20487 * 10 9 8 35 35 H 0.97006 * 119.99912 * 179.97438 * 14 13 11 36 36 H 1.08996 * 109.47056 * 175.30222 * 20 19 2 37 37 H 1.08998 * 109.47096 * 295.30195 * 20 19 2 38 38 H 1.08999 * 109.46798 * 55.29959 * 20 19 2 39 39 H 1.09001 * 109.47068 * 304.63704 * 21 19 2 40 40 H 1.08998 * 109.47221 * 64.63536 * 21 19 2 41 41 H 1.09002 * 109.47478 * 184.63958 * 21 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2454 1.0764 0.0000 4 6 3.7156 0.7276 0.0006 5 6 3.7670 -0.7589 -0.4222 6 1 3.9072 -0.8554 -1.4989 7 6 4.8609 -1.5091 0.3403 8 6 6.2328 -1.0905 -0.1924 9 7 7.2802 -1.8085 0.5382 10 6 7.8498 -1.2309 1.7581 11 6 7.7267 -3.0195 0.0808 12 1 7.5998 -3.2845 -0.9585 13 6 8.3425 -3.9067 0.9530 14 7 8.3007 -3.6898 2.2505 15 14 9.2304 -5.4084 0.2852 16 1 10.3263 -4.9744 -0.6181 17 1 9.7981 -6.1899 1.4130 18 1 8.2722 -6.2547 -0.4703 19 6 2.3617 -1.2460 0.0006 20 6 1.8236 -2.2619 -1.0092 21 6 2.4098 -1.8617 1.4003 22 1 -0.3633 0.0004 1.0277 23 1 -0.3633 0.8898 -0.5142 24 1 -0.3634 -0.8902 -0.5134 25 1 1.8565 2.0839 0.0004 26 1 4.1353 0.8533 0.9987 27 1 4.2527 1.3459 -0.7187 28 1 4.7943 -1.2688 1.4014 29 1 4.7294 -2.5823 0.2020 30 1 6.2994 -1.3309 -1.2535 31 1 6.3642 -0.0174 -0.0540 32 1 7.3209 -1.6225 2.6269 33 1 8.9053 -1.4942 1.8262 34 1 7.7472 -0.1462 1.7287 35 1 8.7307 -4.3099 2.8600 36 1 2.4966 -3.1179 -1.0571 37 1 0.8338 -2.5950 -0.6971 38 1 1.7571 -1.7965 -1.9925 39 1 2.7563 -1.1144 2.1143 40 1 1.4129 -2.1996 1.6831 41 1 3.0947 -2.7097 1.4010 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207278990.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:13 Heat of formation + Delta-G solvation = 3.270464 kcal Electronic energy + Delta-G solvation = -17609.829980 eV Core-core repulsion = 15103.321024 eV Total energy + Delta-G solvation = -2506.508956 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.94926 -37.59862 -34.42420 -33.21653 -32.61679 -30.09063 -28.25488 -27.92153 -26.58079 -24.85117 -24.00402 -22.22722 -20.05556 -18.74966 -18.25229 -16.88443 -16.26984 -15.96320 -15.50144 -15.26150 -14.71676 -14.56500 -14.41006 -14.19021 -13.69448 -13.51829 -13.48336 -13.01407 -12.88546 -12.79628 -12.56429 -12.39196 -12.28371 -12.22502 -12.08672 -12.00855 -11.90240 -11.58497 -11.44554 -11.23804 -10.96055 -10.61293 -9.47703 -8.75591 -7.81039 -5.28212 1.40760 1.45720 1.48204 1.54831 2.52260 3.32258 3.59472 3.67364 3.77401 4.03646 4.24662 4.33381 4.43552 4.50742 4.61719 4.72621 4.72822 4.75163 4.81827 4.82956 4.90617 4.92671 4.97234 5.00683 5.06006 5.10733 5.18234 5.21106 5.29628 5.33604 5.41464 5.43885 5.55134 5.61932 5.66604 5.74273 5.76126 6.22490 6.35482 7.17559 7.90756 8.34543 9.22947 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.036440 B = 0.005762 C = 0.005421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.207389 B = 4858.251888 C = 5163.637744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.130 4.130 3 C -0.175 4.175 4 C -0.092 4.092 5 C -0.078 4.078 6 H 0.076 0.924 7 C -0.103 4.103 8 C 0.150 3.850 9 N -0.622 5.622 10 C 0.180 3.820 11 C -0.260 4.260 12 H 0.069 0.931 13 C -0.055 4.055 14 N -0.941 5.941 15 Si 0.968 3.032 16 H -0.278 1.278 17 H -0.294 1.294 18 H -0.276 1.276 19 C -0.035 4.035 20 C -0.134 4.134 21 C -0.128 4.128 22 H 0.070 0.930 23 H 0.074 0.926 24 H 0.069 0.931 25 H 0.138 0.862 26 H 0.062 0.938 27 H 0.074 0.926 28 H 0.040 0.960 29 H 0.033 0.967 30 H 0.042 0.958 31 H 0.054 0.946 32 H 0.000 1.000 33 H 0.017 0.983 34 H 0.027 0.973 35 H 0.247 0.753 36 H 0.043 0.957 37 H 0.066 0.934 38 H 0.060 0.940 39 H 0.044 0.956 40 H 0.063 0.937 41 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.971 8.156 -5.188 17.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.130 4.130 3 C -0.193 4.193 4 C -0.129 4.129 5 C -0.097 4.097 6 H 0.095 0.905 7 C -0.143 4.143 8 C 0.024 3.976 9 N -0.346 5.346 10 C 0.035 3.965 11 C -0.391 4.391 12 H 0.086 0.914 13 C -0.249 4.249 14 N -0.589 5.589 15 Si 0.796 3.204 16 H -0.204 1.204 17 H -0.220 1.220 18 H -0.202 1.202 19 C -0.035 4.035 20 C -0.191 4.191 21 C -0.186 4.186 22 H 0.088 0.912 23 H 0.093 0.907 24 H 0.088 0.912 25 H 0.156 0.844 26 H 0.081 0.919 27 H 0.093 0.907 28 H 0.059 0.941 29 H 0.052 0.948 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.018 0.982 33 H 0.035 0.965 34 H 0.046 0.954 35 H 0.056 0.944 36 H 0.062 0.938 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.063 0.937 40 H 0.082 0.918 41 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -14.877 8.073 -5.066 17.669 hybrid contribution 0.845 -1.068 0.208 1.378 sum -14.032 7.005 -4.858 16.418 Atomic orbital electron populations 1.20574 0.89836 1.03113 1.02407 1.22086 0.96259 0.94248 1.00386 1.23217 0.94737 0.98737 1.02629 1.21354 0.95131 0.95329 1.01091 1.22060 0.93324 0.94903 0.99447 0.90530 1.21963 0.95262 0.98508 0.98598 1.21016 0.87039 0.94813 0.94723 1.44235 1.41578 1.20376 1.28378 1.20503 0.96170 0.91990 0.87865 1.19505 1.32956 0.93465 0.93143 0.91360 1.25778 1.02978 1.00786 0.95406 1.70237 1.48193 1.38603 1.01837 0.85333 0.78732 0.79450 0.76903 1.20379 1.22003 1.20186 1.20350 0.93437 0.94251 0.95472 1.21797 1.00848 0.97974 0.98460 1.21748 1.01245 0.99863 0.95711 0.91167 0.90694 0.91206 0.84439 0.91942 0.90722 0.94141 0.94793 0.93992 0.92799 0.98167 0.96466 0.95449 0.94402 0.93794 0.91455 0.92077 0.93725 0.91843 0.93924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.73 10.19 71.24 0.73 -1.01 16 2 C -0.13 -2.93 5.02 -15.88 -0.08 -3.01 16 3 C -0.18 -3.97 10.59 26.26 0.28 -3.69 16 4 C -0.09 -2.43 5.87 30.53 0.18 -2.25 16 5 C -0.08 -2.33 2.55 -9.68 -0.02 -2.35 16 6 H 0.08 2.24 7.91 -2.38 -0.02 2.22 16 7 C -0.10 -3.96 3.69 30.59 0.11 -3.85 16 8 C 0.15 6.28 5.61 86.38 0.48 6.76 16 9 N -0.62 -32.61 2.93 -726.93 -2.13 -34.74 16 10 C 0.18 9.34 9.01 127.77 1.15 10.49 16 11 C -0.26 -14.81 9.67 84.04 0.81 -13.99 16 12 H 0.07 3.77 7.84 -2.91 -0.02 3.75 16 13 C -0.05 -3.17 5.13 84.86 0.44 -2.74 16 14 N -0.94 -57.40 10.58 21.65 0.23 -57.17 16 15 Si 0.97 46.20 29.57 68.60 2.03 48.22 16 16 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 17 H -0.29 -14.06 7.11 99.48 0.71 -13.36 16 18 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 19 C -0.04 -0.93 0.80 -52.25 -0.04 -0.97 16 20 C -0.13 -3.21 8.00 71.98 0.58 -2.63 16 21 C -0.13 -3.71 7.39 71.98 0.53 -3.18 16 22 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 23 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 24 H 0.07 1.09 6.80 -2.39 -0.02 1.08 16 25 H 0.14 2.52 8.06 -2.91 -0.02 2.49 16 26 H 0.06 1.80 7.74 -2.39 -0.02 1.78 16 27 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.04 1.67 6.87 -2.39 -0.02 1.65 16 29 H 0.03 1.48 7.48 -2.38 -0.02 1.46 16 30 H 0.04 1.72 8.03 -2.39 -0.02 1.70 16 31 H 0.05 2.04 7.48 -2.39 -0.02 2.02 16 32 H 0.00 0.00 7.42 -2.39 -0.02 -0.02 16 33 H 0.02 0.94 7.19 -2.39 -0.02 0.92 16 34 H 0.03 1.21 7.84 -2.39 -0.02 1.19 16 35 H 0.25 14.64 8.31 -92.70 -0.77 13.87 16 36 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.07 1.38 7.29 -2.39 -0.02 1.36 16 38 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.04 1.34 7.78 -2.39 -0.02 1.32 16 40 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.04 1.42 6.64 -2.39 -0.02 1.41 16 Total: -1.00 -63.66 317.45 6.23 -57.43 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: 0.96 Total: 8.66 kcal Atomic # 6 Polarization: -27.55 SS G_CDS: 5.14 Total: -22.41 kcal Atomic # 7 Polarization: -90.01 SS G_CDS: -1.90 Total: -91.91 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.22 kcal Total: -63.66 6.23 -57.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207278990.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.701 kcal (2) G-P(sol) polarization free energy of solvation -63.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds