Wall clock time and date at job start Sun Mar 29 2020 21:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46906 * 109.47207 * 2 1 4 4 C 1.46903 * 110.99814 * 288.00439 * 3 2 1 5 5 C 1.50701 * 109.47054 * 160.36124 * 4 3 2 6 6 H 1.07999 * 119.99828 * 4.65242 * 5 4 3 7 7 C 1.37878 * 119.99801 * 184.65650 * 5 4 3 8 8 N 1.31517 * 120.00144 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 119.99817 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47580 * 359.97438 * 9 7 5 11 11 H 1.48507 * 109.47330 * 120.00212 * 9 7 5 12 12 H 1.48504 * 109.47307 * 239.99967 * 9 7 5 13 13 C 1.46895 * 110.99961 * 164.05060 * 3 2 1 14 14 C 1.53005 * 109.46930 * 293.94938 * 13 3 2 15 15 C 1.53000 * 109.46797 * 180.02562 * 14 13 3 16 16 N 1.46503 * 109.47170 * 180.02562 * 15 14 13 17 17 C 1.34942 * 126.03527 * 124.99444 * 16 15 14 18 18 C 1.35315 * 107.74467 * 179.97438 * 17 16 15 19 19 C 1.39873 * 107.92168 * 0.02562 * 18 17 16 20 20 N 1.30838 * 108.20006 * 359.73867 * 19 18 17 21 21 H 1.09005 * 109.46548 * 299.46275 * 1 2 3 22 22 H 1.09000 * 109.47171 * 59.46483 * 1 2 3 23 23 H 1.09001 * 109.47265 * 179.46935 * 1 2 3 24 24 H 1.09002 * 109.47122 * 240.00208 * 2 1 3 25 25 H 1.09002 * 109.47500 * 120.00093 * 2 1 3 26 26 H 1.09005 * 109.46763 * 280.35950 * 4 3 2 27 27 H 1.08997 * 109.47191 * 40.35422 * 4 3 2 28 28 H 0.97000 * 119.99881 * 179.97438 * 8 7 5 29 29 H 1.09004 * 109.46668 * 173.95534 * 13 3 2 30 30 H 1.08995 * 109.47483 * 53.95389 * 13 3 2 31 31 H 1.08994 * 109.46615 * 60.00367 * 14 13 3 32 32 H 1.08995 * 109.47405 * 300.00498 * 14 13 3 33 33 H 1.08996 * 109.47022 * 60.00270 * 15 14 13 34 34 H 1.08995 * 109.47408 * 300.00322 * 15 14 13 35 35 H 1.08000 * 126.12870 * 0.02562 * 17 16 15 36 36 H 1.08003 * 126.04050 * 180.02562 * 18 17 16 37 37 H 1.08000 * 125.89713 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7955 2.0226 -1.3043 5 6 1.8469 3.5205 -1.1467 6 1 2.1021 3.9545 -0.1912 7 6 1.5680 4.3368 -2.2223 8 7 1.2576 3.8083 -3.3859 9 14 1.6309 6.1934 -2.0267 10 1 2.0013 6.5318 -0.6290 11 1 2.6428 6.7552 -2.9572 12 1 0.2982 6.7695 -2.3383 13 6 3.4383 1.4418 0.3768 14 6 3.5973 0.9996 1.8329 15 6 5.0748 1.0593 2.2256 16 7 5.2272 0.6353 3.6196 17 6 6.0334 -0.3504 4.0660 18 6 5.8858 -0.4277 5.4088 19 6 4.9572 0.5438 5.7964 20 7 4.5656 1.1852 4.7253 21 1 -0.3632 0.5055 0.8948 22 1 -0.3633 0.5221 -0.8851 23 1 -0.3634 -1.0276 -0.0095 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 2.5697 1.7040 -2.0023 27 1 0.8179 1.7309 -1.6881 28 1 1.0611 4.3827 -4.1425 29 1 3.8033 2.4629 0.2653 30 1 4.0128 0.7780 -0.2693 31 1 3.2323 -0.0214 1.9444 32 1 3.0228 1.6633 2.4790 33 1 5.4394 2.0805 2.1142 34 1 5.6496 0.3958 1.5795 35 1 6.6811 -0.9667 3.4601 36 1 6.3951 -1.1176 6.0655 37 1 4.6240 0.7344 6.8059 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208075915.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:16 Heat of formation + Delta-G solvation = 74.563879 kcal Electronic energy + Delta-G solvation = -16515.954216 eV Core-core repulsion = 13908.996431 eV Total energy + Delta-G solvation = -2606.957785 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.06571 -37.37952 -34.40481 -32.61019 -31.06499 -30.04454 -29.31526 -26.78135 -24.70266 -22.61963 -21.91065 -21.04952 -20.35874 -19.56532 -17.19301 -16.41982 -15.49096 -15.04516 -14.67780 -14.42285 -14.02299 -13.82388 -13.63034 -13.18334 -12.85665 -12.53081 -12.08365 -11.85939 -11.70974 -11.24944 -11.12829 -10.97126 -10.79151 -10.68444 -10.52040 -10.36189 -10.12808 -9.61613 -9.38961 -9.19548 -8.57807 -8.41208 -7.25466 -6.01710 -4.02557 1.94315 2.56994 2.86137 3.31529 3.39263 3.44842 4.41832 4.50541 4.78919 4.85963 5.06128 5.24754 5.33759 5.37818 5.51565 5.63071 5.72442 5.75341 5.78892 5.94670 5.98242 6.04293 6.20885 6.32880 6.50510 6.58662 6.65010 6.68255 6.83347 7.04881 7.24653 7.33545 7.75141 7.83637 8.13026 8.21963 8.55295 9.05699 9.61677 11.08945 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.026354 B = 0.005123 C = 0.004581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.211030 B = 5463.842728 C = 6110.783395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.049 3.951 3 N -0.534 5.534 4 C 0.190 3.810 5 C -0.503 4.503 6 H 0.063 0.937 7 C 0.054 3.946 8 N -0.900 5.900 9 Si 0.896 3.104 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.284 1.284 13 C 0.067 3.933 14 C -0.126 4.126 15 C 0.131 3.869 16 N -0.364 5.364 17 C 0.049 3.951 18 C -0.282 4.282 19 C 0.035 3.965 20 N -0.288 5.288 21 H 0.057 0.943 22 H 0.061 0.939 23 H 0.044 0.956 24 H 0.020 0.980 25 H 0.058 0.942 26 H -0.012 1.012 27 H 0.037 0.963 28 H 0.260 0.740 29 H 0.084 0.916 30 H 0.019 0.981 31 H 0.062 0.938 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.171 0.829 36 H 0.143 0.857 37 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.286 -9.486 12.133 17.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.080 4.080 3 N -0.259 5.259 4 C 0.065 3.935 5 C -0.541 4.541 6 H 0.081 0.919 7 C -0.147 4.147 8 N -0.540 5.540 9 Si 0.724 3.276 10 H -0.196 1.196 11 H -0.212 1.212 12 H -0.210 1.210 13 C -0.062 4.062 14 C -0.165 4.165 15 C 0.010 3.990 16 N -0.146 5.146 17 C -0.097 4.097 18 C -0.312 4.312 19 C -0.151 4.151 20 N -0.110 5.110 21 H 0.076 0.924 22 H 0.080 0.920 23 H 0.063 0.937 24 H 0.038 0.962 25 H 0.076 0.924 26 H 0.006 0.994 27 H 0.055 0.945 28 H 0.070 0.930 29 H 0.102 0.898 30 H 0.037 0.963 31 H 0.080 0.920 32 H 0.103 0.897 33 H 0.106 0.894 34 H 0.111 0.889 35 H 0.188 0.812 36 H 0.161 0.839 37 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 7.203 -8.193 11.668 15.973 hybrid contribution 1.036 -0.187 -0.364 1.114 sum 8.239 -8.379 11.304 16.306 Atomic orbital electron populations 1.21742 0.95539 0.99880 1.02945 1.22043 0.96078 0.91023 0.98847 1.62116 1.15245 1.14159 1.34397 1.19799 0.96480 0.94292 0.82883 1.21219 1.45925 0.90663 0.96339 0.91855 1.24985 0.95509 0.98949 0.95219 1.69968 1.47890 1.35120 1.01050 0.86471 0.77583 0.85406 0.78152 1.19631 1.21169 1.21031 1.21858 0.90527 1.01515 0.92286 1.21919 0.93312 1.02591 0.98629 1.21843 0.99702 1.01869 0.75582 1.48903 1.32106 1.26343 1.07234 1.22579 0.97166 0.93951 0.96054 1.21467 1.08198 1.07014 0.94539 1.23876 0.97445 0.95546 0.98198 1.77426 1.19165 1.21752 0.92645 0.92410 0.91993 0.93733 0.96173 0.92386 0.99442 0.94482 0.93033 0.89778 0.96267 0.91989 0.89716 0.89409 0.88882 0.81228 0.83899 0.80340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 9.99 37.16 0.37 -2.14 16 2 C 0.05 0.89 5.55 -3.82 -0.02 0.87 16 3 N -0.53 -11.43 4.38 -236.06 -1.03 -12.47 16 4 C 0.19 4.92 4.59 -4.97 -0.02 4.90 16 5 C -0.50 -14.11 8.61 -34.44 -0.30 -14.41 16 6 H 0.06 1.78 7.66 -52.49 -0.40 1.38 16 7 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 8 N -0.90 -26.73 13.29 55.43 0.74 -25.99 16 9 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 10 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 13 C 0.07 1.23 4.78 -3.82 -0.02 1.21 16 14 C -0.13 -1.93 5.37 -26.73 -0.14 -2.07 16 15 C 0.13 1.64 6.51 -4.04 -0.03 1.62 16 16 N -0.36 -4.87 3.68 -61.37 -0.23 -5.10 16 17 C 0.05 0.54 11.45 -17.23 -0.20 0.34 16 18 C -0.28 -3.02 10.80 -40.01 -0.43 -3.45 16 19 C 0.04 0.43 12.03 -17.36 -0.21 0.22 16 20 N -0.29 -4.36 12.42 30.63 0.38 -3.98 16 21 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 22 H 0.06 1.21 6.52 -51.93 -0.34 0.87 16 23 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 24 H 0.02 0.37 8.05 -51.93 -0.42 -0.05 16 25 H 0.06 0.95 5.94 -51.93 -0.31 0.64 16 26 H -0.01 -0.33 8.00 -51.93 -0.42 -0.75 16 27 H 0.04 1.03 6.24 -51.93 -0.32 0.70 16 28 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 29 H 0.08 1.66 7.32 -51.93 -0.38 1.28 16 30 H 0.02 0.33 8.12 -51.93 -0.42 -0.09 16 31 H 0.06 0.94 6.28 -51.93 -0.33 0.61 16 32 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 33 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 34 H 0.09 0.91 8.07 -51.93 -0.42 0.50 16 35 H 0.17 1.24 8.06 -52.49 -0.42 0.81 16 36 H 0.14 1.15 8.06 -52.48 -0.42 0.73 16 37 H 0.18 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 307.01 15.07 4.63 4.63 Total: -1.00 -31.86 307.01 -7.48 -39.34 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: -5.85 Total: -1.69 kcal Atomic # 6 Polarization: -10.38 SS G_CDS: -1.09 Total: -11.47 kcal Atomic # 7 Polarization: -47.39 SS G_CDS: -0.14 Total: -47.53 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -31.86 -7.48 -39.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208075915.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.905 kcal (2) G-P(sol) polarization free energy of solvation -31.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds