Wall clock time and date at job start Sun Mar 29 2020 21:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46906 * 109.47207 * 2 1 4 4 C 1.46903 * 110.99814 * 288.00439 * 3 2 1 5 5 C 1.50701 * 109.47054 * 160.36124 * 4 3 2 6 6 H 1.07999 * 119.99828 * 4.65242 * 5 4 3 7 7 C 1.37878 * 119.99801 * 184.65650 * 5 4 3 8 8 N 1.31517 * 120.00144 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 119.99817 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47580 * 359.97438 * 9 7 5 11 11 H 1.48507 * 109.47330 * 120.00212 * 9 7 5 12 12 H 1.48504 * 109.47307 * 239.99967 * 9 7 5 13 13 C 1.46895 * 110.99961 * 164.05060 * 3 2 1 14 14 C 1.53005 * 109.46930 * 293.94938 * 13 3 2 15 15 C 1.53000 * 109.46797 * 180.02562 * 14 13 3 16 16 N 1.46503 * 109.47170 * 180.02562 * 15 14 13 17 17 C 1.34942 * 126.03527 * 124.99444 * 16 15 14 18 18 C 1.35315 * 107.74467 * 179.97438 * 17 16 15 19 19 C 1.39873 * 107.92168 * 0.02562 * 18 17 16 20 20 N 1.30838 * 108.20006 * 359.73867 * 19 18 17 21 21 H 1.09005 * 109.46548 * 299.46275 * 1 2 3 22 22 H 1.09000 * 109.47171 * 59.46483 * 1 2 3 23 23 H 1.09001 * 109.47265 * 179.46935 * 1 2 3 24 24 H 1.09002 * 109.47122 * 240.00208 * 2 1 3 25 25 H 1.09002 * 109.47500 * 120.00093 * 2 1 3 26 26 H 1.09005 * 109.46763 * 280.35950 * 4 3 2 27 27 H 1.08997 * 109.47191 * 40.35422 * 4 3 2 28 28 H 0.97000 * 119.99881 * 179.97438 * 8 7 5 29 29 H 1.09004 * 109.46668 * 173.95534 * 13 3 2 30 30 H 1.08995 * 109.47483 * 53.95389 * 13 3 2 31 31 H 1.08994 * 109.46615 * 60.00367 * 14 13 3 32 32 H 1.08995 * 109.47405 * 300.00498 * 14 13 3 33 33 H 1.08996 * 109.47022 * 60.00270 * 15 14 13 34 34 H 1.08995 * 109.47408 * 300.00322 * 15 14 13 35 35 H 1.08000 * 126.12870 * 0.02562 * 17 16 15 36 36 H 1.08003 * 126.04050 * 180.02562 * 18 17 16 37 37 H 1.08000 * 125.89713 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7955 2.0226 -1.3043 5 6 1.8469 3.5205 -1.1467 6 1 2.1021 3.9545 -0.1912 7 6 1.5680 4.3368 -2.2223 8 7 1.2576 3.8083 -3.3859 9 14 1.6309 6.1934 -2.0267 10 1 2.0013 6.5318 -0.6290 11 1 2.6428 6.7552 -2.9572 12 1 0.2982 6.7695 -2.3383 13 6 3.4383 1.4418 0.3768 14 6 3.5973 0.9996 1.8329 15 6 5.0748 1.0593 2.2256 16 7 5.2272 0.6353 3.6196 17 6 6.0334 -0.3504 4.0660 18 6 5.8858 -0.4277 5.4088 19 6 4.9572 0.5438 5.7964 20 7 4.5656 1.1852 4.7253 21 1 -0.3632 0.5055 0.8948 22 1 -0.3633 0.5221 -0.8851 23 1 -0.3634 -1.0276 -0.0095 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 2.5697 1.7040 -2.0023 27 1 0.8179 1.7309 -1.6881 28 1 1.0611 4.3827 -4.1425 29 1 3.8033 2.4629 0.2653 30 1 4.0128 0.7780 -0.2693 31 1 3.2323 -0.0214 1.9444 32 1 3.0228 1.6633 2.4790 33 1 5.4394 2.0805 2.1142 34 1 5.6496 0.3958 1.5795 35 1 6.6811 -0.9667 3.4601 36 1 6.3951 -1.1176 6.0655 37 1 4.6240 0.7344 6.8059 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001208075915.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:16 Heat of formation + Delta-G solvation = 53.847154 kcal Electronic energy + Delta-G solvation = -16516.852561 eV Core-core repulsion = 13908.996431 eV Total energy + Delta-G solvation = -2607.856130 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.94764 -38.98575 -35.63601 -34.66961 -32.28761 -31.24384 -30.64162 -28.51710 -26.11481 -24.41322 -23.27047 -21.92114 -21.40347 -21.10957 -18.62009 -18.04025 -16.81361 -16.59832 -16.21931 -15.92342 -15.33407 -15.05173 -14.86190 -14.48309 -14.24024 -13.82565 -13.56317 -13.25341 -13.08997 -12.88145 -12.75229 -12.59595 -12.43440 -12.28746 -12.10893 -11.84621 -11.48276 -11.36122 -11.15950 -10.59783 -10.34526 -9.44989 -8.99595 -8.19762 -6.29155 1.07637 1.39140 1.40635 1.53893 1.68140 2.02936 2.40061 3.10523 3.23318 3.70295 3.91519 4.09936 4.13875 4.26195 4.30169 4.37288 4.45101 4.50970 4.63730 4.77278 4.79916 4.89865 4.95099 5.01970 5.11917 5.20416 5.21645 5.28211 5.34255 5.38245 5.67354 5.82691 6.09395 6.21663 6.42456 6.65385 6.86482 6.86813 7.40293 8.90802 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.026354 B = 0.005123 C = 0.004581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.211030 B = 5463.842728 C = 6110.783395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.048 3.952 3 N -0.548 5.548 4 C 0.206 3.794 5 C -0.519 4.519 6 H 0.057 0.943 7 C 0.003 3.997 8 N -0.934 5.934 9 Si 0.965 3.035 10 H -0.267 1.267 11 H -0.276 1.276 12 H -0.279 1.279 13 C 0.070 3.930 14 C -0.105 4.105 15 C 0.136 3.864 16 N -0.379 5.379 17 C 0.051 3.949 18 C -0.287 4.287 19 C 0.031 3.969 20 N -0.345 5.345 21 H 0.053 0.947 22 H 0.032 0.968 23 H 0.078 0.922 24 H 0.020 0.980 25 H 0.085 0.915 26 H -0.037 1.037 27 H 0.012 0.988 28 H 0.264 0.736 29 H 0.062 0.938 30 H 0.033 0.967 31 H 0.068 0.932 32 H 0.055 0.945 33 H 0.082 0.918 34 H 0.127 0.873 35 H 0.207 0.793 36 H 0.170 0.830 37 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.537 -10.373 13.370 19.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.080 4.080 3 N -0.273 5.273 4 C 0.080 3.920 5 C -0.557 4.557 6 H 0.075 0.925 7 C -0.194 4.194 8 N -0.575 5.575 9 Si 0.790 3.210 10 H -0.191 1.191 11 H -0.202 1.202 12 H -0.205 1.205 13 C -0.059 4.059 14 C -0.144 4.144 15 C 0.014 3.986 16 N -0.161 5.161 17 C -0.095 4.095 18 C -0.316 4.316 19 C -0.154 4.154 20 N -0.168 5.168 21 H 0.072 0.928 22 H 0.051 0.949 23 H 0.097 0.903 24 H 0.038 0.962 25 H 0.103 0.897 26 H -0.020 1.020 27 H 0.030 0.970 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.051 0.949 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.100 0.900 34 H 0.145 0.855 35 H 0.224 0.776 36 H 0.188 0.812 37 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 8.463 -9.096 12.929 17.931 hybrid contribution 0.666 0.003 -0.691 0.959 sum 9.129 -9.093 12.238 17.770 Atomic orbital electron populations 1.21713 0.95069 1.01605 1.01274 1.22152 0.96535 0.89327 1.00012 1.62039 1.17560 1.16194 1.31522 1.19425 0.94210 0.93794 0.84542 1.21490 1.45984 0.92054 0.96185 0.92458 1.25845 0.94935 1.03863 0.94798 1.70081 1.48594 1.36969 1.01848 0.85399 0.77837 0.79432 0.78339 1.19133 1.20195 1.20468 1.21836 0.88784 1.00753 0.94521 1.21639 0.95367 1.01786 0.95598 1.21783 0.97770 1.02733 0.76276 1.48930 1.33019 1.27298 1.06902 1.23273 0.96466 0.93029 0.96727 1.21875 1.07779 1.06953 0.95041 1.24422 0.97151 0.95246 0.98628 1.77375 1.21437 1.23946 0.94001 0.92755 0.94893 0.90301 0.96212 0.89701 1.01955 0.96955 0.92718 0.91968 0.94893 0.91393 0.92570 0.89982 0.85502 0.77589 0.81222 0.78168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.80 9.99 71.98 0.72 -4.09 16 2 C 0.05 1.70 5.55 86.30 0.48 2.18 16 3 N -0.55 -23.79 4.38 -900.77 -3.95 -27.73 16 4 C 0.21 11.05 4.59 85.56 0.39 11.44 16 5 C -0.52 -29.84 8.61 25.60 0.22 -29.62 16 6 H 0.06 3.29 7.66 -2.91 -0.02 3.27 16 7 C 0.00 0.20 5.46 84.65 0.46 0.66 16 8 N -0.93 -56.46 13.29 21.45 0.28 -56.18 16 9 Si 0.96 45.00 29.54 68.60 2.03 47.03 16 10 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 11 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 12 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 13 C 0.07 2.54 4.78 86.31 0.41 2.96 16 14 C -0.11 -3.14 5.37 30.60 0.16 -2.98 16 15 C 0.14 3.18 6.51 86.38 0.56 3.74 16 16 N -0.38 -9.49 3.68 -348.07 -1.28 -10.77 16 17 C 0.05 0.95 11.45 83.54 0.96 1.91 16 18 C -0.29 -5.32 10.80 21.99 0.24 -5.08 16 19 C 0.03 0.70 12.03 85.24 1.03 1.72 16 20 N -0.35 -10.22 12.42 -57.02 -0.71 -10.93 16 21 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 22 H 0.03 1.31 6.52 -2.39 -0.02 1.29 16 23 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 24 H 0.02 0.71 8.05 -2.39 -0.02 0.69 16 25 H 0.08 2.60 5.94 -2.39 -0.01 2.58 16 26 H -0.04 -2.13 8.00 -2.38 -0.02 -2.15 16 27 H 0.01 0.72 6.24 -2.39 -0.01 0.70 16 28 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 29 H 0.06 2.52 7.32 -2.38 -0.02 2.50 16 30 H 0.03 1.11 8.12 -2.39 -0.02 1.09 16 31 H 0.07 1.93 6.28 -2.39 -0.02 1.92 16 32 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.13 2.09 8.07 -2.39 -0.02 2.07 16 35 H 0.21 2.08 8.06 -2.91 -0.02 2.05 16 36 H 0.17 2.10 8.06 -2.91 -0.02 2.08 16 37 H 0.20 3.24 8.06 -2.91 -0.02 3.22 16 Total: -1.00 -70.45 307.01 3.03 -67.42 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: 1.03 Total: 8.31 kcal Atomic # 6 Polarization: -22.78 SS G_CDS: 5.63 Total: -17.14 kcal Atomic # 7 Polarization: -99.96 SS G_CDS: -5.65 Total: -105.61 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -70.45 3.03 -67.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208075915.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.264 kcal (2) G-P(sol) polarization free energy of solvation -70.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds