Wall clock time and date at job start Sun Mar 29 2020 21:51:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 119.99748 * 2 1 4 4 H 1.48505 * 109.47132 * 270.00174 * 3 2 1 5 5 H 1.48506 * 109.47113 * 29.99936 * 3 2 1 6 6 H 1.48500 * 109.47220 * 149.99875 * 3 2 1 7 7 C 1.37875 * 120.00665 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00224 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99832 * 359.97438 * 7 2 1 10 10 C 1.53929 * 113.73605 * 278.77126 * 9 7 2 11 11 N 1.48186 * 86.10050 * 221.95623 * 10 9 7 12 12 C 1.46905 * 111.07096 * 137.52182 * 11 10 9 13 13 C 1.52994 * 109.47140 * 70.56540 * 12 11 10 14 14 C 1.53008 * 109.46870 * 180.02562 * 13 12 11 15 15 C 1.53003 * 109.46765 * 179.97438 * 14 13 12 16 16 C 1.54258 * 110.03496 * 292.90778 * 15 14 13 17 17 C 1.54972 * 104.16020 * 217.13920 * 16 15 14 18 18 C 1.54890 * 102.77374 * 37.88724 * 17 16 15 19 19 C 1.53877 * 110.02991 * 175.68744 * 15 14 13 20 20 C 1.47957 * 90.80024 * 24.59999 * 11 10 9 21 21 H 0.96996 * 120.00369 * 0.02562 * 1 2 3 22 22 H 1.08998 * 112.93440 * 50.33708 * 9 7 2 23 23 H 1.09000 * 113.75938 * 336.23679 * 10 9 7 24 24 H 1.08998 * 113.76053 * 107.59970 * 10 9 7 25 25 H 1.08999 * 109.46982 * 190.56472 * 12 11 10 26 26 H 1.08996 * 109.46958 * 310.56009 * 12 11 10 27 27 H 1.08999 * 109.47128 * 299.99843 * 13 12 11 28 28 H 1.08996 * 109.47171 * 60.00155 * 13 12 11 29 29 H 1.08999 * 109.47053 * 299.99810 * 14 13 12 30 30 H 1.08996 * 109.47161 * 60.00070 * 14 13 12 31 31 H 1.09000 * 110.01716 * 54.29998 * 15 14 13 32 32 H 1.09004 * 110.48862 * 335.78412 * 16 15 14 33 33 H 1.08996 * 110.49323 * 98.42848 * 16 15 14 34 34 H 1.08989 * 110.71977 * 279.57362 * 17 16 15 35 35 H 1.08998 * 110.92130 * 156.29542 * 17 16 15 36 36 H 1.09006 * 110.48312 * 203.40147 * 18 17 16 37 37 H 1.09004 * 110.59963 * 80.81929 * 18 17 16 38 38 H 1.08999 * 110.03418 * 238.57486 * 19 15 14 39 39 H 1.09003 * 110.03239 * 359.95606 * 19 15 14 40 40 H 1.09006 * 113.75754 * 221.08861 * 20 11 10 41 41 H 1.08999 * 113.75952 * 89.71874 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4992 -0.0005 10 6 0.7559 -2.9287 1.3922 11 7 1.1895 -4.2942 1.0139 12 6 1.8779 -4.9578 2.1292 13 6 0.8650 -5.2959 3.2249 14 6 1.5822 -5.9864 4.3868 15 6 0.5693 -6.3240 5.4828 16 6 0.0276 -5.0275 6.1192 17 6 -0.1269 -5.3781 7.6208 18 6 1.1093 -6.2708 7.8930 19 6 1.2565 -7.1146 6.6100 20 6 2.1612 -3.7398 0.0456 21 1 -0.4850 0.8400 -0.0004 22 1 0.4837 -2.5465 -0.7730 23 1 1.3281 -2.4980 2.2139 24 1 -0.3214 -2.8297 1.5249 25 1 2.3471 -5.8747 1.7726 26 1 2.6411 -4.2923 2.5326 27 1 0.3958 -4.3790 3.5814 28 1 0.1020 -5.9614 2.8214 29 1 2.0517 -6.9033 4.0305 30 1 2.3450 -5.3205 4.7902 31 1 -0.2519 -6.9065 5.0653 32 1 0.7394 -4.2123 5.9893 33 1 -0.9378 -4.7646 5.6868 34 1 -1.0493 -5.9321 7.7946 35 1 -0.0968 -4.4786 8.2357 36 1 0.9326 -6.9144 8.7548 37 1 1.9972 -5.6585 8.0510 38 1 0.7681 -8.0803 6.7401 39 1 2.3113 -7.2584 6.3759 40 1 2.2046 -4.2879 -0.8957 41 1 3.1454 -3.5470 0.4726 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208087917.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:33 Heat of formation + Delta-G solvation = -5.925600 kcal Electronic energy + Delta-G solvation = -16870.520215 eV Core-core repulsion = 14363.612487 eV Total energy + Delta-G solvation = -2506.907727 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.92412 -38.29228 -34.02044 -32.44211 -29.87978 -28.75998 -27.12892 -24.95474 -24.78173 -22.48703 -20.94902 -20.29755 -19.53553 -18.49326 -16.58535 -15.87525 -15.30275 -14.90992 -14.71870 -14.28755 -13.79900 -13.61326 -13.39326 -12.87479 -12.22215 -12.09858 -11.84273 -11.44075 -11.20924 -11.16419 -11.02637 -10.99770 -10.85067 -10.72919 -10.65379 -10.54649 -10.38438 -10.26801 -10.05259 -9.61876 -9.07625 -8.94224 -8.41952 -7.79887 -6.02786 -4.07178 3.29737 3.36588 3.39382 4.41611 4.49856 4.58283 4.64112 4.92012 5.21809 5.23072 5.28106 5.37614 5.44936 5.56024 5.58593 5.59577 5.69759 5.77144 5.80605 5.88787 6.01397 6.03872 6.07246 6.11819 6.22014 6.24525 6.25899 6.41152 6.43327 6.52306 6.61433 6.64922 6.70367 6.90915 7.19570 7.30946 7.76039 7.94953 8.16844 8.40395 8.95184 9.57511 11.06719 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.030217 B = 0.004569 C = 0.004219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.416748 B = 6127.156394 C = 6634.677953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.066 3.934 3 Si 0.890 3.110 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.518 4.518 8 H 0.056 0.944 9 C 0.037 3.963 10 C 0.016 3.984 11 N -0.494 5.494 12 C 0.024 3.976 13 C -0.113 4.113 14 C -0.109 4.109 15 C -0.091 4.091 16 C -0.121 4.121 17 C -0.126 4.126 18 C -0.125 4.125 19 C -0.121 4.121 20 C -0.003 4.003 21 H 0.261 0.739 22 H 0.058 0.942 23 H 0.052 0.948 24 H 0.065 0.935 25 H 0.059 0.941 26 H 0.031 0.969 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.059 0.941 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.412 -11.670 12.689 17.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.136 4.136 3 Si 0.717 3.283 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.557 4.557 8 H 0.075 0.925 9 C 0.019 3.981 10 C -0.113 4.113 11 N -0.217 5.217 12 C -0.105 4.105 13 C -0.150 4.150 14 C -0.147 4.147 15 C -0.110 4.110 16 C -0.158 4.158 17 C -0.164 4.164 18 C -0.162 4.162 19 C -0.159 4.159 20 C -0.132 4.132 21 H 0.071 0.929 22 H 0.076 0.924 23 H 0.070 0.930 24 H 0.084 0.916 25 H 0.078 0.922 26 H 0.050 0.950 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.776 -12.052 12.489 17.373 hybrid contribution 1.109 1.427 0.424 1.856 sum 1.885 -10.625 12.913 16.829 Atomic orbital electron populations 1.69965 1.05961 1.26658 1.49851 1.25002 0.94808 0.99067 0.94737 0.86639 0.79893 0.83551 0.78179 1.20566 1.21197 1.19926 1.21111 0.92760 0.90475 1.51317 0.92541 1.20317 0.93731 0.91012 0.93089 1.24009 0.99774 0.86623 1.00866 1.68510 1.26169 1.17262 1.09727 1.22551 0.95912 0.98889 0.93183 1.21519 0.98371 1.00755 0.94400 1.21689 0.97669 1.00176 0.95215 1.21782 0.97852 0.96214 0.95137 1.22477 1.01251 0.97491 0.94610 1.22514 0.97913 0.99263 0.96693 1.22352 0.98358 0.98158 0.97376 1.22228 1.00657 0.98381 0.94644 1.24051 0.95299 0.98034 0.95792 0.92918 0.92431 0.92979 0.91629 0.92229 0.95036 0.91798 0.91792 0.92345 0.92201 0.91210 0.91333 0.91623 0.91802 0.91839 0.92160 0.91801 0.92205 0.91832 0.91815 0.92872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.81 13.29 55.43 0.74 -25.07 16 2 C 0.07 1.85 5.46 -17.82 -0.10 1.76 16 3 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.52 -14.36 8.77 -34.44 -0.30 -14.66 16 8 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 9 C 0.04 0.96 3.60 -90.84 -0.33 0.64 16 10 C 0.02 0.38 6.68 -2.64 -0.02 0.36 16 11 N -0.49 -10.37 6.26 -238.16 -1.49 -11.86 16 12 C 0.02 0.41 4.82 -3.82 -0.02 0.39 16 13 C -0.11 -1.70 5.13 -26.73 -0.14 -1.84 16 14 C -0.11 -1.34 4.34 -26.73 -0.12 -1.46 16 15 C -0.09 -1.01 2.93 -89.50 -0.26 -1.27 16 16 C -0.12 -1.36 5.50 -25.03 -0.14 -1.50 16 17 C -0.13 -1.22 6.91 -24.69 -0.17 -1.39 16 18 C -0.12 -1.14 6.83 -25.07 -0.17 -1.31 16 19 C -0.12 -1.16 6.46 -25.61 -0.17 -1.33 16 20 C 0.00 -0.07 7.53 -2.76 -0.02 -0.09 16 21 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 22 H 0.06 1.61 8.14 -51.93 -0.42 1.19 16 23 H 0.05 1.25 7.74 -51.93 -0.40 0.85 16 24 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16 25 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.03 0.57 7.70 -51.93 -0.40 0.17 16 27 H 0.06 1.04 6.89 -51.93 -0.36 0.68 16 28 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.75 8.02 -51.93 -0.42 0.33 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.07 0.83 7.77 -51.93 -0.40 0.43 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.58 8.14 -51.94 -0.42 0.16 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.60 7.67 -51.93 -0.40 0.20 16 40 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 41 H 0.05 1.14 7.74 -51.93 -0.40 0.74 16 LS Contribution 320.86 15.07 4.84 4.84 Total: -1.00 -28.16 320.86 -10.70 -38.86 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -7.82 Total: -1.30 kcal Atomic # 6 Polarization: -19.75 SS G_CDS: -1.94 Total: -21.69 kcal Atomic # 7 Polarization: -36.18 SS G_CDS: -0.75 Total: -36.93 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -28.16 -10.70 -38.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208087917.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.936 kcal (2) G-P(sol) polarization free energy of solvation -28.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds