Wall clock time and date at job start Sun Mar 29 2020 21:51:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 119.99748 * 2 1 4 4 H 1.48505 * 109.47132 * 270.00174 * 3 2 1 5 5 H 1.48506 * 109.47113 * 29.99936 * 3 2 1 6 6 H 1.48500 * 109.47220 * 149.99875 * 3 2 1 7 7 C 1.37875 * 120.00665 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00224 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99832 * 359.97438 * 7 2 1 10 10 C 1.53929 * 113.73605 * 278.77126 * 9 7 2 11 11 N 1.48186 * 86.10050 * 221.95623 * 10 9 7 12 12 C 1.46905 * 111.07096 * 137.52182 * 11 10 9 13 13 C 1.52994 * 109.47140 * 70.56540 * 12 11 10 14 14 C 1.53008 * 109.46870 * 180.02562 * 13 12 11 15 15 C 1.53003 * 109.46765 * 179.97438 * 14 13 12 16 16 C 1.54258 * 110.03496 * 292.90778 * 15 14 13 17 17 C 1.54972 * 104.16020 * 217.13920 * 16 15 14 18 18 C 1.54890 * 102.77374 * 37.88724 * 17 16 15 19 19 C 1.53877 * 110.02991 * 175.68744 * 15 14 13 20 20 C 1.47957 * 90.80024 * 24.59999 * 11 10 9 21 21 H 0.96996 * 120.00369 * 0.02562 * 1 2 3 22 22 H 1.08998 * 112.93440 * 50.33708 * 9 7 2 23 23 H 1.09000 * 113.75938 * 336.23679 * 10 9 7 24 24 H 1.08998 * 113.76053 * 107.59970 * 10 9 7 25 25 H 1.08999 * 109.46982 * 190.56472 * 12 11 10 26 26 H 1.08996 * 109.46958 * 310.56009 * 12 11 10 27 27 H 1.08999 * 109.47128 * 299.99843 * 13 12 11 28 28 H 1.08996 * 109.47171 * 60.00155 * 13 12 11 29 29 H 1.08999 * 109.47053 * 299.99810 * 14 13 12 30 30 H 1.08996 * 109.47161 * 60.00070 * 14 13 12 31 31 H 1.09000 * 110.01716 * 54.29998 * 15 14 13 32 32 H 1.09004 * 110.48862 * 335.78412 * 16 15 14 33 33 H 1.08996 * 110.49323 * 98.42848 * 16 15 14 34 34 H 1.08989 * 110.71977 * 279.57362 * 17 16 15 35 35 H 1.08998 * 110.92130 * 156.29542 * 17 16 15 36 36 H 1.09006 * 110.48312 * 203.40147 * 18 17 16 37 37 H 1.09004 * 110.59963 * 80.81929 * 18 17 16 38 38 H 1.08999 * 110.03418 * 238.57486 * 19 15 14 39 39 H 1.09003 * 110.03239 * 359.95606 * 19 15 14 40 40 H 1.09006 * 113.75754 * 221.08861 * 20 11 10 41 41 H 1.08999 * 113.75952 * 89.71874 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4992 -0.0005 10 6 0.7559 -2.9287 1.3922 11 7 1.1895 -4.2942 1.0139 12 6 1.8779 -4.9578 2.1292 13 6 0.8650 -5.2959 3.2249 14 6 1.5822 -5.9864 4.3868 15 6 0.5693 -6.3240 5.4828 16 6 0.0276 -5.0275 6.1192 17 6 -0.1269 -5.3781 7.6208 18 6 1.1093 -6.2708 7.8930 19 6 1.2565 -7.1146 6.6100 20 6 2.1612 -3.7398 0.0456 21 1 -0.4850 0.8400 -0.0004 22 1 0.4837 -2.5465 -0.7730 23 1 1.3281 -2.4980 2.2139 24 1 -0.3214 -2.8297 1.5249 25 1 2.3471 -5.8747 1.7726 26 1 2.6411 -4.2923 2.5326 27 1 0.3958 -4.3790 3.5814 28 1 0.1020 -5.9614 2.8214 29 1 2.0517 -6.9033 4.0305 30 1 2.3450 -5.3205 4.7902 31 1 -0.2519 -6.9065 5.0653 32 1 0.7394 -4.2123 5.9893 33 1 -0.9378 -4.7646 5.6868 34 1 -1.0493 -5.9321 7.7946 35 1 -0.0968 -4.4786 8.2357 36 1 0.9326 -6.9144 8.7548 37 1 1.9972 -5.6585 8.0510 38 1 0.7681 -8.0803 6.7401 39 1 2.3113 -7.2584 6.3759 40 1 2.2046 -4.2879 -0.8957 41 1 3.1454 -3.5470 0.4726 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001208087917.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:32 Heat of formation + Delta-G solvation = -21.373809 kcal Electronic energy + Delta-G solvation = -16871.190099 eV Core-core repulsion = 14363.612487 eV Total energy + Delta-G solvation = -2507.577612 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.53389 -39.32690 -35.39471 -34.34197 -31.24381 -29.57808 -28.68781 -26.80660 -26.39334 -23.91814 -22.12418 -21.32487 -20.52966 -20.28477 -18.63511 -16.81620 -16.74724 -16.50490 -16.04227 -15.82148 -15.41632 -15.05014 -14.19168 -14.13137 -13.84982 -13.51893 -13.28934 -13.15335 -12.84978 -12.80456 -12.39690 -12.07821 -11.98106 -11.94565 -11.84776 -11.68802 -11.47077 -11.45819 -11.27762 -11.17164 -11.01774 -10.82058 -10.51591 -9.57735 -8.15788 -6.27765 1.41668 1.41866 1.52502 2.41499 3.13674 3.23683 3.68350 3.77705 3.80738 4.04512 4.17528 4.26199 4.44482 4.47599 4.51957 4.57411 4.60246 4.70289 4.72608 4.77822 4.80834 4.85654 4.90251 4.94421 5.00131 5.04240 5.08194 5.13861 5.22512 5.27196 5.31487 5.39205 5.42584 5.50537 5.58997 5.60793 5.62328 5.84394 6.28855 6.41662 6.80898 7.40779 8.93797 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.030217 B = 0.004569 C = 0.004219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.416748 B = 6127.156394 C = 6634.677953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.015 3.985 3 Si 0.958 3.042 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.266 1.266 7 C -0.536 4.536 8 H 0.058 0.942 9 C 0.018 3.982 10 C 0.030 3.970 11 N -0.493 5.493 12 C 0.023 3.977 13 C -0.105 4.105 14 C -0.101 4.101 15 C -0.090 4.090 16 C -0.126 4.126 17 C -0.125 4.125 18 C -0.124 4.124 19 C -0.119 4.119 20 C 0.011 3.989 21 H 0.263 0.737 22 H 0.025 0.975 23 H 0.045 0.955 24 H 0.048 0.952 25 H 0.080 0.920 26 H 0.027 0.973 27 H 0.045 0.955 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.062 0.938 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.079 0.921 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.642 -12.559 13.758 18.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.184 4.184 3 Si 0.783 3.217 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.190 1.190 7 C -0.574 4.574 8 H 0.076 0.924 9 C -0.001 4.001 10 C -0.099 4.099 11 N -0.215 5.215 12 C -0.105 4.105 13 C -0.143 4.143 14 C -0.139 4.139 15 C -0.109 4.109 16 C -0.163 4.163 17 C -0.162 4.162 18 C -0.161 4.161 19 C -0.157 4.157 20 C -0.118 4.118 21 H 0.072 0.928 22 H 0.043 0.957 23 H 0.063 0.937 24 H 0.067 0.933 25 H 0.099 0.901 26 H 0.046 0.954 27 H 0.064 0.936 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.097 0.903 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.018 -12.957 13.558 18.862 hybrid contribution 0.701 1.667 0.062 1.809 sum 2.720 -11.290 13.620 17.899 Atomic orbital electron populations 1.70091 1.07522 1.27596 1.50797 1.25823 0.95618 1.02672 0.94301 0.85567 0.78716 0.79033 0.78421 1.19871 1.20863 1.19048 1.21442 0.93008 0.91663 1.51255 0.92406 1.20318 0.94150 0.92350 0.93283 1.23696 0.98519 0.88340 0.99375 1.68455 1.26588 1.15621 1.10870 1.22652 0.96195 0.99097 0.92604 1.21452 0.97930 1.00205 0.94721 1.21620 0.97626 1.00268 0.94378 1.21771 0.97635 0.96188 0.95307 1.22487 1.00371 0.97373 0.96113 1.22517 0.98678 0.99707 0.95308 1.22361 0.97878 0.98143 0.97730 1.22214 1.00791 0.98609 0.94037 1.23929 0.94945 0.96103 0.96829 0.92825 0.95721 0.93676 0.93327 0.90148 0.95444 0.93603 0.91938 0.90996 0.92417 0.91234 0.92680 0.92629 0.91120 0.91561 0.90696 0.91932 0.91128 0.91435 0.90296 0.92145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.66 13.29 21.45 0.28 -54.38 16 2 C 0.02 0.85 5.46 84.65 0.46 1.32 16 3 Si 0.96 43.62 29.54 68.60 2.03 45.64 16 4 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 5 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 6 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 7 C -0.54 -29.93 8.77 25.60 0.22 -29.70 16 8 H 0.06 3.14 7.81 -2.91 -0.02 3.11 16 9 C 0.02 0.94 3.60 -10.89 -0.04 0.91 16 10 C 0.03 1.44 6.68 86.36 0.58 2.02 16 11 N -0.49 -20.45 6.26 -907.42 -5.68 -26.14 16 12 C 0.02 0.77 4.82 86.30 0.42 1.19 16 13 C -0.11 -3.09 5.13 30.59 0.16 -2.93 16 14 C -0.10 -2.31 4.34 30.60 0.13 -2.17 16 15 C -0.09 -1.85 2.93 -10.07 -0.03 -1.88 16 16 C -0.13 -2.77 5.50 31.70 0.17 -2.59 16 17 C -0.12 -2.22 6.91 31.91 0.22 -2.00 16 18 C -0.12 -1.98 6.83 31.67 0.22 -1.76 16 19 C -0.12 -1.99 6.46 31.32 0.20 -1.79 16 20 C 0.01 0.45 7.53 86.41 0.65 1.10 16 21 H 0.26 14.74 8.31 -92.71 -0.77 13.96 16 22 H 0.02 1.44 8.14 -2.39 -0.02 1.42 16 23 H 0.04 2.21 7.74 -2.39 -0.02 2.19 16 24 H 0.05 2.46 8.14 -2.39 -0.02 2.44 16 25 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 26 H 0.03 0.95 7.70 -2.39 -0.02 0.93 16 27 H 0.05 1.50 6.89 -2.39 -0.02 1.49 16 28 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.06 1.36 8.02 -2.39 -0.02 1.34 16 31 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.05 1.34 7.77 -2.38 -0.02 1.32 16 33 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 37 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 38 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.07 1.09 7.67 -2.39 -0.02 1.07 16 40 H 0.08 3.14 8.14 -2.38 -0.02 3.12 16 41 H 0.06 2.51 7.74 -2.39 -0.02 2.49 16 Total: -1.00 -59.92 320.86 0.94 -58.98 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: 0.95 Total: 14.20 kcal Atomic # 6 Polarization: -41.67 SS G_CDS: 3.36 Total: -38.31 kcal Atomic # 7 Polarization: -75.12 SS G_CDS: -5.40 Total: -80.51 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.64 kcal Total: -59.92 0.94 -58.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208087917.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.602 kcal (2) G-P(sol) polarization free energy of solvation -59.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds